View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12619_high_1 (Length: 383)

Name: NF12619_high_1
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12619_high_1
NF12619_high_1
[»] chr3 (8 HSPs)
chr3 (93-365)||(3744996-3745268)
chr3 (93-193)||(4142889-4142989)
chr3 (93-193)||(3753784-3753884)
chr3 (93-193)||(4158699-4158799)
chr3 (96-193)||(967869-967966)
chr3 (94-129)||(803977-804012)
chr3 (96-195)||(1937720-1937819)
chr3 (99-195)||(2679196-2679292)
[»] chr1 (2 HSPs)
chr1 (1-148)||(23896812-23896959)
chr1 (61-158)||(25611722-25611819)
[»] chr5 (1 HSPs)
chr5 (93-268)||(11081304-11081479)
[»] chr8 (1 HSPs)
chr8 (96-193)||(19727117-19727214)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 93 - 365
Target Start/End: Complemental strand, 3745268 - 3744996
Alignment:
Q  93 gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagag 192  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3745268 gatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaatgacgtcggaaggaagag 3745169  T
Q  193 tggtggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttcctctgtcgtagaggaataaacggcaccgttttgatc 292  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3745168 tggtggacacacgaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttcctctgtcgtagaggaataaacagcaccgttttgatc 3745069  T
Q  293 acgcctcttgctacccgaagaagccatatacggttgtgactctaaaccctaaaaccttaaacctaatgaatgc 365  Q
    |||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||    
T  3745068 acgcctcttgctaccccaagaagccatattcagttgtgactctaaaccctaaaaccttaaacctaacgaatgc 3744996  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 4142889 - 4142989
Alignment:
Q  93 gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagag 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||    
T  4142889 gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagag 4142988  T
Q  193 t 193  Q
    |    
T  4142989 t 4142989  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 3753884 - 3753784
Alignment:
Q  93 gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagag 192  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||| |||||||||    
T  3753884 gatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagag 3753785  T
Q  193 t 193  Q
    |    
T  3753784 t 3753784  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 4158699 - 4158799
Alignment:
Q  93 gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagag 192  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||    
T  4158699 gatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagag 4158798  T
Q  193 t 193  Q
    |    
T  4158799 t 4158799  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 967966 - 967869
Alignment:
Q  96 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt 193  Q
    |||||||||||||| |||||||| |||||||||||| | | || || ||| |||| ||||||| |||  |||||||||||||  ||| ||||||||||    
T  967966 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagt 967869  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 803977 - 804012
Alignment:
Q  94 atattagagaattccatgacttgcaaacacatcgga 129  Q
    |||||||||||||||||||||||||||| |||||||    
T  803977 atattagagaattccatgacttgcaaacgcatcgga 804012  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 1937720 - 1937819
Alignment:
Q  96 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtgg 195  Q
    |||||||||||| ||||||||||||| || |||||||  |||| ||  || |||| ||||||| | | ||||||||||||||  ||  ||||||||||||    
T  1937720 attagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagagtgg 1937819  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 2679196 - 2679292
Alignment:
Q  99 agagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtgg 195  Q
    ||||| |||||||||||||| |||||||||| | |||||| ||| || ||| ||| |||| | |  || ||||| |||| |||| ||||||||||||    
T  2679196 agagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgaggtcgaaaggaagagtgg 2679292  T

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Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 23896812 - 23896959
Alignment:
Q  1 actcttttcttgacgagtgcaatgagcttgtgacgaggtgtttgcgtttggttgataagagaaggtgtttcttgaagaatttctgatccttcgatattag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23896812 actcttttcttgacgagtgcaatgagcttgtgacgaggtgtttgcgtttggttgataagagaaggtgtttcttgaagaatttctgatccttcgagattag 23896911  T
Q  101 agaattccatgacttgcaaacacatcggaatcgaaggatgaacttgac 148  Q
    |||||||||||||||||| || || |||||| | |||| |||||||||    
T  23896912 agaattccatgacttgcagacgcagcggaattgtaggaggaacttgac 23896959  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 25611722 - 25611819
Alignment:
Q  61 gaaggtgtttcttgaagaatttctgatccttcgatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 158  Q
    |||||||||||||||  || ||  |||| ||||||||||||||||||||||||||||| || || | |||| |||||| |||||||||||| ||||||    
T  25611722 gaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagccta 25611819  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 11081479 - 11081304
Alignment:
Q  93 gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagag 192  Q
    ||||||| |||||| || ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||| ||||||| ||||||  |||||||||||||    
T  11081479 gatattaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagag 11081380  T
Q  193 tggtggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttcctctgtcgtaga 268  Q
    |||| ||||||| ||||||||| | || ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  11081379 tggtagacacacgaaggtgctttcctgatacaatcgagaggtgattgttgatggaagttgtttcctctatcgtaga 11081304  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 19727214 - 19727117
Alignment:
Q  96 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt 193  Q
    |||||||||||| | ||||||||||||||||||||  | | || ||| || || |||||||||  ||  |||||||||||||  ||| ||||||||||    
T  19727214 attagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgagatcgaaaggaagagt 19727117  T

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