View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12619_high_2 (Length: 381)

Name: NF12619_high_2
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12619_high_2
NF12619_high_2
[»] chr4 (28 HSPs)
chr4 (77-365)||(29473658-29473947)
chr4 (1-35)||(11209965-11209999)
chr4 (1-35)||(18936075-18936109)
chr4 (3-35)||(29473994-29474026)
chr4 (1-32)||(4634697-4634728)
chr4 (1-32)||(9662267-9662298)
chr4 (1-32)||(14542181-14542212)
chr4 (1-32)||(41486988-41487019)
chr4 (1-35)||(393926-393960)
chr4 (1-35)||(7084377-7084411)
chr4 (1-35)||(8517111-8517145)
chr4 (1-35)||(13965978-13966012)
chr4 (1-35)||(14346845-14346879)
chr4 (1-35)||(24100568-24100602)
chr4 (1-35)||(24826074-24826108)
chr4 (1-35)||(29576787-29576821)
chr4 (1-35)||(38435012-38435046)
chr4 (1-35)||(42197988-42198022)
chr4 (1-35)||(43244033-43244067)
chr4 (1-35)||(44374941-44374975)
chr4 (1-35)||(45350722-45350756)
chr4 (1-35)||(45360201-45360235)
chr4 (1-35)||(46716560-46716594)
chr4 (2-32)||(53903994-53904024)
chr4 (2-32)||(54420409-54420439)
chr4 (1-35)||(55600198-55600232)
chr4 (1-35)||(56236483-56236517)
chr4 (1-33)||(7060749-7060781)
[»] chr8 (20 HSPs)
chr8 (3-35)||(16937005-16937037)
chr8 (1-32)||(9993080-9993111)
chr8 (1-32)||(31874478-31874509)
chr8 (1-32)||(44295730-44295761)
chr8 (1-35)||(2234130-2234164)
chr8 (1-35)||(5457485-5457519)
chr8 (1-35)||(6314928-6314962)
chr8 (1-35)||(8054474-8054508)
chr8 (2-32)||(16996558-16996588)
chr8 (1-35)||(24790830-24790864)
chr8 (1-35)||(31202883-31202917)
chr8 (1-35)||(31712740-31712774)
chr8 (1-35)||(37613071-37613105)
chr8 (1-33)||(2968950-2968982)
chr8 (1-33)||(9799679-9799711)
chr8 (3-35)||(12248377-12248409)
chr8 (1-33)||(19720448-19720480)
chr8 (3-35)||(37659276-37659308)
chr8 (1-33)||(38545478-38545510)
chr8 (1-33)||(41362168-41362200)
[»] chr7 (36 HSPs)
chr7 (3-35)||(16273797-16273829)
chr7 (1-32)||(134814-134845)
chr7 (1-32)||(7986306-7986337)
chr7 (1-35)||(2623027-2623061)
chr7 (1-35)||(4621032-4621066)
chr7 (1-35)||(6667830-6667864)
chr7 (2-32)||(8611292-8611322)
chr7 (1-35)||(9137827-9137861)
chr7 (1-35)||(9785752-9785786)
chr7 (2-32)||(18754110-18754140)
chr7 (1-35)||(21991097-21991131)
chr7 (1-35)||(26017324-26017358)
chr7 (3-33)||(28015773-28015803)
chr7 (1-35)||(34893521-34893555)
chr7 (1-35)||(35133222-35133256)
chr7 (1-35)||(37593518-37593552)
chr7 (1-35)||(38277232-38277266)
chr7 (1-35)||(39090502-39090536)
chr7 (1-35)||(39707703-39707737)
chr7 (2-32)||(40477122-40477152)
chr7 (1-35)||(43847408-43847442)
chr7 (1-35)||(44482530-44482564)
chr7 (1-35)||(46025707-46025741)
chr7 (1-35)||(48304044-48304078)
chr7 (1-35)||(48643478-48643512)
chr7 (2-32)||(49167340-49167370)
chr7 (2-35)||(23808762-23808795)
chr7 (1-34)||(37375709-37375742)
chr7 (1-33)||(11833453-11833485)
chr7 (1-33)||(14657575-14657607)
chr7 (1-33)||(15123671-15123703)
chr7 (1-33)||(15670464-15670496)
chr7 (1-33)||(30992492-30992524)
chr7 (1-33)||(31254785-31254817)
chr7 (1-33)||(32312935-32312967)
chr7 (4-32)||(47156802-47156830)
[»] chr2 (30 HSPs)
chr2 (1-33)||(3390837-3390869)
chr2 (4-35)||(15673630-15673661)
chr2 (1-32)||(25771859-25771890)
chr2 (1-35)||(3527421-3527455)
chr2 (1-35)||(4878400-4878434)
chr2 (1-35)||(11550332-11550366)
chr2 (1-35)||(11931286-11931320)
chr2 (1-35)||(13878661-13878695)
chr2 (1-35)||(14018786-14018820)
chr2 (1-35)||(15920288-15920322)
chr2 (1-35)||(16136513-16136547)
chr2 (1-35)||(18089064-18089098)
chr2 (1-35)||(18141147-18141181)
chr2 (1-35)||(20560785-20560819)
chr2 (1-35)||(25068276-25068310)
chr2 (2-32)||(25516939-25516969)
chr2 (1-35)||(27096124-27096158)
chr2 (1-35)||(29543228-29543262)
chr2 (1-35)||(32314860-32314894)
chr2 (1-35)||(33012483-33012517)
chr2 (1-35)||(35333940-35333974)
chr2 (1-35)||(36868443-36868477)
chr2 (1-35)||(38384118-38384152)
chr2 (1-35)||(40125799-40125833)
chr2 (2-32)||(41177273-41177303)
chr2 (2-32)||(43567287-43567317)
chr2 (1-35)||(43696303-43696337)
chr2 (1-33)||(12705121-12705153)
chr2 (1-33)||(34962649-34962681)
chr2 (4-32)||(38822487-38822515)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-32)||(36938-36969)
[»] chr6 (13 HSPs)
chr6 (1-32)||(20845427-20845458)
chr6 (1-35)||(4660863-4660897)
chr6 (1-35)||(5146361-5146395)
chr6 (1-35)||(5545094-5545128)
chr6 (1-35)||(12481031-12481065)
chr6 (1-35)||(12653970-12654004)
chr6 (1-35)||(15589777-15589811)
chr6 (1-35)||(19402504-19402538)
chr6 (1-35)||(20496607-20496641)
chr6 (1-35)||(23654684-23654718)
chr6 (1-35)||(30813492-30813526)
chr6 (2-30)||(12576152-12576180)
chr6 (3-35)||(35219565-35219597)
[»] chr5 (28 HSPs)
chr5 (1-32)||(10923803-10923834)
chr5 (1-32)||(31646243-31646274)
chr5 (1-32)||(35906683-35906714)
chr5 (1-35)||(2979088-2979122)
chr5 (2-32)||(4070965-4070995)
chr5 (1-35)||(4726669-4726703)
chr5 (1-35)||(5378716-5378750)
chr5 (1-35)||(6647575-6647609)
chr5 (1-35)||(9196683-9196717)
chr5 (1-35)||(11734497-11734531)
chr5 (1-35)||(14211499-14211533)
chr5 (1-35)||(17331763-17331797)
chr5 (1-35)||(23881768-23881802)
chr5 (2-32)||(28619017-28619047)
chr5 (1-35)||(34431499-34431533)
chr5 (1-35)||(34866846-34866880)
chr5 (1-35)||(39179497-39179531)
chr5 (1-35)||(39531060-39531094)
chr5 (1-35)||(40775175-40775209)
chr5 (1-35)||(42505065-42505099)
chr5 (1-34)||(15710958-15710991)
chr5 (1-34)||(28423703-28423736)
chr5 (2-35)||(33164121-33164154)
chr5 (3-35)||(14910342-14910374)
chr5 (1-33)||(17218137-17218169)
chr5 (1-33)||(33486237-33486269)
chr5 (3-35)||(41554903-41554935)
chr5 (1-33)||(42396164-42396196)
[»] chr3 (27 HSPs)
chr3 (1-32)||(10977657-10977688)
chr3 (1-32)||(20200727-20200758)
chr3 (1-32)||(20202909-20202940)
chr3 (1-32)||(43030097-43030128)
chr3 (1-35)||(4020012-4020046)
chr3 (1-35)||(11819519-11819553)
chr3 (1-35)||(13701662-13701696)
chr3 (1-35)||(14585897-14585931)
chr3 (1-35)||(19645625-19645659)
chr3 (1-35)||(21289596-21289630)
chr3 (1-35)||(24483356-24483390)
chr3 (1-35)||(33637829-33637863)
chr3 (1-35)||(36623923-36623957)
chr3 (1-35)||(45047932-45047966)
chr3 (1-35)||(48652109-48652143)
chr3 (1-35)||(49627764-49627798)
chr3 (2-32)||(50520198-50520228)
chr3 (1-35)||(55090359-55090393)
chr3 (1-35)||(55455297-55455331)
chr3 (1-33)||(2192513-2192545)
chr3 (1-33)||(34960591-34960623)
chr3 (1-33)||(48401527-48401559)
chr3 (1-33)||(50981128-50981160)
chr3 (1-33)||(51084262-51084294)
chr3 (1-33)||(51487359-51487391)
chr3 (3-35)||(53126260-53126292)
chr3 (1-33)||(54706394-54706426)
[»] chr1 (27 HSPs)
chr1 (1-32)||(15276115-15276146)
chr1 (1-32)||(22344581-22344612)
chr1 (1-35)||(630450-630484)
chr1 (1-35)||(4882029-4882063)
chr1 (1-35)||(10304998-10305032)
chr1 (1-35)||(11121390-11121424)
chr1 (1-35)||(12872041-12872075)
chr1 (1-35)||(12967399-12967433)
chr1 (1-35)||(13152862-13152896)
chr1 (1-35)||(13969306-13969340)
chr1 (2-32)||(15698613-15698643)
chr1 (1-35)||(15790928-15790962)
chr1 (1-35)||(26199994-26200028)
chr1 (1-35)||(29205703-29205737)
chr1 (1-35)||(34659307-34659341)
chr1 (1-35)||(36775492-36775526)
chr1 (1-35)||(44517583-44517617)
chr1 (1-35)||(46589562-46589596)
chr1 (2-35)||(10627441-10627474)
chr1 (2-35)||(34334762-34334795)
chr1 (1-33)||(3233206-3233238)
chr1 (1-33)||(8893706-8893738)
chr1 (1-33)||(12971783-12971815)
chr1 (1-33)||(25032757-25032789)
chr1 (1-33)||(26771520-26771552)
chr1 (3-35)||(44513668-44513700)
chr1 (1-33)||(49652249-49652281)
[»] scaffold0536 (1 HSPs)
scaffold0536 (1-35)||(3330-3364)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-35)||(35510-35544)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-33)||(2102-2134)
[»] scaffold0011 (1 HSPs)
scaffold0011 (4-32)||(11436-11464)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 29473947 - 29473658
Alignment:
Q  77 agacatttcaaagaatt-gattatacaaatttcaaaaattattatatttacttcctcaacaaggttagtattttccaataattaacccacttgaaaattt 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29473947 agacatttcaaagaatttgattatacaaatttcaaaaattattatatttacttcctcaacaaggttagtaatttccaataattaacccacttgaaaattt 29473848  T
Q  176 gaaatgaatcttatttttcttggattaattgattttttatttatttataatcaagacaagataagatatagcattaatttatccattattaagttcatta 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29473847 gaaatgaatcttatttttcttggattaattgattttttatttatttataatcaagacaagataagatctagcattaatttatccattattaagttcatta 29473748  T
Q  276 tgtgtattaatgttctttccgttgagtggattaatgatgaagagggtgtgataactattctcacctaacaaacaaaccttctaacgatag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29473747 tgtgtattaatgttctttccgttgagtggattaatgatgaagagggtgtgataactattctcacctaacaaacaaaccttctaacgatag 29473658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11209999 - 11209965
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11209999 atcaatttgaatgaatgaatatcttttatttttgt 11209965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18936075 - 18936109
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18936075 atcaatttgaatgaatgaatatcttttatttttgt 18936109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 29474026 - 29473994
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||||||||||||    
T  29474026 caatttgaatgaatgaatatcttttatttttgt 29473994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4634697 - 4634728
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  4634697 atcaatttgaatgaatgaatatcttttatttt 4634728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9662267 - 9662298
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  9662267 atcaatttgaatgaatgaatatcttttatttt 9662298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14542212 - 14542181
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  14542212 atcaatttgaatgaatgaatatcttttatttt 14542181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41486988 - 41487019
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  41486988 atcaatttgaatgaatgaatatcttttatttt 41487019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 393960 - 393926
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  393960 atcaatttgaatgaatgaatatcgtttatttttgt 393926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7084377 - 7084411
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  7084377 atcaatttgaatgaatgaatatcgtttatttttgt 7084411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8517145 - 8517111
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  8517145 atcaatttgaatgaatgaatatcgtttatttttgt 8517111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13965978 - 13966012
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13965978 atcaatttgaatgaatgaatatcgtttatttttgt 13966012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14346845 - 14346879
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  14346845 atcaatttgaatgaatgaatatcgtttatttttgt 14346879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24100568 - 24100602
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24100568 atcaatttgaatgaatgaatatcatttatttttgt 24100602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24826074 - 24826108
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24826074 atcaatttgaatgaatgaatatcgtttatttttgt 24826108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29576821 - 29576787
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  29576821 atcaatttgaatgaatgaatatcatttatttttgt 29576787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38435012 - 38435046
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38435012 atcaatttgaatgaatgaatatcgtttatttttgt 38435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42197988 - 42198022
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  42197988 atcaatttgaatgaatgaatatcgtttatttttgt 42198022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43244067 - 43244033
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  43244067 atcaatttgaatgaatgaatatcgtttatttttgt 43244033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44374975 - 44374941
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44374975 atcaatttgaatgaatgaatatcatttatttttgt 44374941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45350756 - 45350722
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  45350756 atcaatttgaatgaatgaatatcgtttatttttgt 45350722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45360235 - 45360201
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  45360235 atcaatttgaatgaatgaatatcgtttatttttgt 45360201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46716594 - 46716560
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  46716594 atcaatttgaatgaatgaatatcatttatttttgt 46716560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 53903994 - 53904024
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  53903994 tcaatttgaatgaatgaatatcttttatttt 53904024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 54420439 - 54420409
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  54420439 tcaatttgaatgaatgaatatcttttatttt 54420409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55600232 - 55600198
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  55600232 atcaatttgaatgaatgaatatcgtttatttttgt 55600198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 56236517 - 56236483
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  56236517 atcaatttgaatgaatgaatatcatttatttttgt 56236483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7060749 - 7060781
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  7060749 atcaatttgaatgaatgaatatcgtttattttt 7060781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 16937037 - 16937005
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||||||||||||    
T  16937037 caatttgaatgaatgaatatcttttatttttgt 16937005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9993080 - 9993111
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  9993080 atcaatttgaatgaatgaatatcttttatttt 9993111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31874478 - 31874509
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  31874478 atcaatttgaatgaatgaatatcttttatttt 31874509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 44295730 - 44295761
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  44295730 atcaatttgaatgaatgaatatcttttatttt 44295761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2234164 - 2234130
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  2234164 atcaatttgaatgaatgaatatcgtttatttttgt 2234130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5457485 - 5457519
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  5457485 atcaatttgaatgaatgaatatcatttatttttgt 5457519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6314928 - 6314962
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  6314928 atcaatttgaatgaatgaatatcatttatttttgt 6314962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8054508 - 8054474
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  8054508 atcaatttgaatgaatgaatatcatttatttttgt 8054474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 16996588 - 16996558
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  16996588 tcaatttgaatgaatgaatatcttttatttt 16996558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24790864 - 24790830
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24790864 atcaatttgaatgaatgaatatcgtttatttttgt 24790830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31202883 - 31202917
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31202883 atcaatttgaatgaatgaatatcgtttatttttgt 31202917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31712774 - 31712740
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31712774 atcaatttgaatgaatgaatatcatttatttttgt 31712740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37613071 - 37613105
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  37613071 atcaatttgaatgaatgaatatcgtttatttttgt 37613105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2968950 - 2968982
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  2968950 atcaatttgaatgaatgaatatcgtttattttt 2968982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9799711 - 9799679
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  9799711 atcaatttgaatgaatgaatatcatttattttt 9799679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 12248409 - 12248377
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||| |||||||||||    
T  12248409 caatttgaatgaatgaatatcatttatttttgt 12248377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19720448 - 19720480
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  19720448 atcaatttgaatgaatgaatatcgtttattttt 19720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 37659276 - 37659308
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||| |||||||||||    
T  37659276 caatttgaatgaatgaatatcatttatttttgt 37659308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38545510 - 38545478
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  38545510 atcaatttgaatgaatgaatatcgtttattttt 38545478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41362168 - 41362200
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  41362168 atcaatttgaatgaatgaatatcgtttattttt 41362200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 16273797 - 16273829
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||||||||||||    
T  16273797 caatttgaatgaatgaatatcttttatttttgt 16273829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 134845 - 134814
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  134845 atcaatttgaatgaatgaatatcttttatttt 134814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 7986306 - 7986337
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  7986306 atcaatttgaatgaatgaatatcttttatttt 7986337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2623027 - 2623061
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  2623027 atcaatttgaatgaatgaatatcgtttatttttgt 2623061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4621066 - 4621032
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4621066 atcaatttgaatgaatgaatatcgtttatttttgt 4621032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6667830 - 6667864
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  6667830 atcaatttgaatgaatgaatatcgtttatttttgt 6667864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 8611322 - 8611292
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  8611322 tcaatttgaatgaatgaatatcttttatttt 8611292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9137827 - 9137861
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  9137827 atcaatttgaatgaataaatatcttttatttttgt 9137861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9785752 - 9785786
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  9785752 atcaatttgaatgaatgaatatcgtttatttttgt 9785786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 18754110 - 18754140
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  18754110 tcaatttgaatgaatgaatatcttttatttt 18754140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21991097 - 21991131
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  21991097 atcaatttgaatgaatgaatatcgtttatttttgt 21991131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26017358 - 26017324
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  26017358 atcaatttgaatgaatgaatatcatttatttttgt 26017324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 28015773 - 28015803
Alignment:
Q  3 caatttgaatgaatgaatatcttttattttt 33  Q
    |||||||||||||||||||||||||||||||    
T  28015773 caatttgaatgaatgaatatcttttattttt 28015803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34893521 - 34893555
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34893521 atcaatttgaatgaatgaatatcatttatttttgt 34893555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35133222 - 35133256
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  35133222 atcaatttgaatgaatgaatatcctttatttttgt 35133256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37593518 - 37593552
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  37593518 atcaatttgaatgaatgaatatcgtttatttttgt 37593552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38277232 - 38277266
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38277232 atcaatttgaatgaatgaatatcgtttatttttgt 38277266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39090502 - 39090536
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  39090502 atcaatttgaatgaatgaatatcatttatttttgt 39090536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39707703 - 39707737
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  39707703 atcaatttgaatgaatgaatatcgtttatttttgt 39707737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 40477122 - 40477152
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  40477122 tcaatttgaatgaatgaatatcttttatttt 40477152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43847408 - 43847442
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  43847408 atcaatttgaatgaatgaatatcatttatttttgt 43847442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44482564 - 44482530
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44482564 atcaatttgaatgaatgaatatcgtttatttttgt 44482530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46025741 - 46025707
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  46025741 atcaatttgaatgaatgaatatcgtttatttttgt 46025707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48304078 - 48304044
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  48304078 atcaatttgaatgaatgaatatcgtttatttttgt 48304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48643512 - 48643478
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  48643512 atcaatttgaatgaatgaatatcgtttatttttgt 48643478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 49167340 - 49167370
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  49167340 tcaatttgaatgaatgaatatcttttatttt 49167370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 23808762 - 23808795
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||| |||||||||||    
T  23808762 tcaatttgaatgaatgaatatcgtttatttttgt 23808795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37375742 - 37375709
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  37375742 atcaatttgaatgaatgaatatcgtttatttttg 37375709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11833453 - 11833485
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  11833453 atcaatttgaatgaatgaatatcgtttattttt 11833485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14657607 - 14657575
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    |||||||||||| ||||||||||||||||||||    
T  14657607 atcaatttgaattaatgaatatcttttattttt 14657575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15123703 - 15123671
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  15123703 atcaatttgaatgaatgaatatcatttattttt 15123671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15670496 - 15670464
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  15670496 atcaatttgaatgaatgaatatcgtttattttt 15670464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30992524 - 30992492
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  30992524 atcaatttgaatgaatgaatatcatttattttt 30992492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31254817 - 31254785
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  31254817 atcaatttgaatgaatgaatatcctttattttt 31254785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32312935 - 32312967
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  32312935 atcaatttgaatgaatgaatatcatttattttt 32312967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 47156802 - 47156830
Alignment:
Q  4 aatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||    
T  47156802 aatttgaatgaatgaatatcttttatttt 47156830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3390837 - 3390869
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  3390837 atcaatttgaatgaatgaatatcttttattttt 3390869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 15673661 - 15673630
Alignment:
Q  4 aatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||||||||||||    
T  15673661 aatttgaatgaatgaatatcttttatttttgt 15673630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25771859 - 25771890
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  25771859 atcaatttgaatgaatgaatatcttttatttt 25771890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3527421 - 3527455
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  3527421 atcaatttgaatgaatgaatatcgtttatttttgt 3527455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4878434 - 4878400
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4878434 atcaatttgaatgaatgaatatcatttatttttgt 4878400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11550366 - 11550332
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11550366 atcaatttgaatgaatgaatatcatttatttttgt 11550332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11931286 - 11931320
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11931286 atcaatttgaatgaatgaatatcatttatttttgt 11931320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13878695 - 13878661
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13878695 atcaatttgaatgaatgaatatcgtttatttttgt 13878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14018820 - 14018786
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  14018820 atcaatttgaatgaatgaatatcgtttatttttgt 14018786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15920288 - 15920322
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  15920288 atcaatttgaatgaatgaatatcatttatttttgt 15920322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16136513 - 16136547
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  16136513 atcaatttgaatgaatgaatatcgtttatttttgt 16136547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18089098 - 18089064
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  18089098 atcaatttgaatgaatgaatatcgtttatttttgt 18089064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18141181 - 18141147
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  18141181 atcaatttgaatgaatgaatatcatttatttttgt 18141147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20560819 - 20560785
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  20560819 atcaatttgaatgaatgaatatcgtttatttttgt 20560785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25068276 - 25068310
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  25068276 atcaatttgaatgaatgaatatcgtttatttttgt 25068310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 25516939 - 25516969
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  25516939 tcaatttgaatgaatgaatatcttttatttt 25516969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27096124 - 27096158
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  27096124 atcaatttgaatgaatgaatatcgtttatttttgt 27096158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29543228 - 29543262
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  29543228 atcaatttgaatgaatgaatatcgtttatttttgt 29543262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32314860 - 32314894
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  32314860 atcaatttgaatgaatgaatatctattatttttgt 32314894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33012483 - 33012517
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  33012483 atcaatttgaatgaatgaatatcgtttatttttgt 33012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35333940 - 35333974
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  35333940 atcaatttgaatgaatgaatatcgtttatttttgt 35333974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36868443 - 36868477
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36868443 atcaatttgaatgaatgaatatcgtttatttttgt 36868477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38384152 - 38384118
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38384152 atcaatttgaatgaatgaatatcgtttatttttgt 38384118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40125799 - 40125833
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  40125799 atcaatttgaatgaatgaatatcatttatttttgt 40125833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 41177273 - 41177303
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  41177273 tcaatttgaatgaatgaatatcttttatttt 41177303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 43567287 - 43567317
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  43567287 tcaatttgaatgaatgaatatcttttatttt 43567317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43696303 - 43696337
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  43696303 atcaatttgaatgaatgaatatcgtttatttttgt 43696337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12705121 - 12705153
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  12705121 atcaatttgaatgaatgaatatcctttattttt 12705153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34962681 - 34962649
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  34962681 atcaatttgaatgaatgaatatcatttattttt 34962649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 38822487 - 38822515
Alignment:
Q  4 aatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||    
T  38822487 aatttgaatgaatgaatatcttttatttt 38822515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 36938 - 36969
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  36938 atcaatttgaatgaatgaatatcttttatttt 36969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 20845427 - 20845458
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  20845427 atcaatttgaatgaatgaatatcttttatttt 20845458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4660863 - 4660897
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4660863 atcaatttgaatgaatgaatatcgtttatttttgt 4660897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5146361 - 5146395
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  5146361 atcaatttgaatgaatgaatatcgtttatttttgt 5146395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5545094 - 5545128
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  5545094 atcaatttgaatgaatgaatatcatttatttttgt 5545128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12481065 - 12481031
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  12481065 atcaatttgaatgaatgaatatcgtttatttttgt 12481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12654004 - 12653970
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  12654004 atcaatttgaatgaatgaatatcgtttatttttgt 12653970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15589811 - 15589777
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  15589811 atcaatttgaatgaatgaatatcgtttatttttgt 15589777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19402538 - 19402504
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  19402538 atcaatttgaatgaatgaatatcgtttatttttgt 19402504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20496607 - 20496641
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  20496607 atcaatttgaatgaatgaatatcatttatttttgt 20496641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23654684 - 23654718
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  23654684 atcaatttgaatgaatgaatatcgtttatttttgt 23654718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30813492 - 30813526
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  30813492 atcaatttgaatgaatgaatatcgtttatttttgt 30813526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 12576180 - 12576152
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatt 30  Q
    |||||||||||||||||||||||||||||    
T  12576180 tcaatttgaatgaatgaatatcttttatt 12576152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 35219597 - 35219565
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||| |||||||||||    
T  35219597 caatttgaatgaatgaatatcgtttatttttgt 35219565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10923834 - 10923803
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  10923834 atcaatttgaatgaatgaatatcttttatttt 10923803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31646243 - 31646274
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  31646243 atcaatttgaatgaatgaatatcttttatttt 31646274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 35906683 - 35906714
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  35906683 atcaatttgaatgaatgaatatcttttatttt 35906714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2979122 - 2979088
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  2979122 atcaatttgaataaatgaatatcttttatttttgt 2979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 4070965 - 4070995
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  4070965 tcaatttgaatgaatgaatatcttttatttt 4070995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4726703 - 4726669
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4726703 atcaatttgaatgaatgaatatcatttatttttgt 4726669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5378716 - 5378750
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  5378716 atcaatttgaatgaatgaatatcatttatttttgt 5378750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6647609 - 6647575
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  6647609 atcaatttgaatgaatgaatatcatttatttttgt 6647575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9196717 - 9196683
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  9196717 atcaatttgaatgaatgaatatcgtttatttttgt 9196683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11734531 - 11734497
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11734531 atcaatttgaatgaatgaatatcgtttatttttgt 11734497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14211499 - 14211533
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  14211499 atcaatttgaatgaatgaatatcctttatttttgt 14211533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17331763 - 17331797
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  17331763 atcaatttgaatgaatgaatatcgtttatttttgt 17331797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23881802 - 23881768
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  23881802 atcaatttgaatgaatgaatatcgtttatttttgt 23881768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 28619017 - 28619047
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  28619017 tcaatttgaatgaatgaatatcttttatttt 28619047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34431499 - 34431533
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34431499 atcaatttgaatgaatgaatatcgtttatttttgt 34431533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34866846 - 34866880
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34866846 atcaatttgaatgaatgaatatcatttatttttgt 34866880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39179531 - 39179497
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  39179531 atcaatttgaatgaatgaatatcgtttatttttgt 39179497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39531094 - 39531060
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  39531094 atcaatttgaatgaatgaatatcgtttatttttgt 39531060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40775175 - 40775209
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  40775175 atcaatttgaatgaatgaatatcatttatttttgt 40775209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42505099 - 42505065
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  42505099 atcaatttgaatgaatgaatatcgtttatttttgt 42505065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15710958 - 15710991
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  15710958 atcaatttgaatgaatgaatatcatttatttttg 15710991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28423736 - 28423703
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  28423736 atcaatttgaatgaatgaatatcatttatttttg 28423703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 33164154 - 33164121
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||| |||||||||||    
T  33164154 tcaatttgaatgaatgaatatcgtttatttttgt 33164121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 14910374 - 14910342
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||| |||||||||||    
T  14910374 caatttgaatgaatgaatatcgtttatttttgt 14910342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17218137 - 17218169
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  17218137 atcaatttgaatgaatgaatatcatttattttt 17218169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33486269 - 33486237
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  33486269 atcaatttgaatgaatgaatatcttttaatttt 33486237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 41554903 - 41554935
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||| |||||||||||||||||    
T  41554903 caatttgaatgaatggatatcttttatttttgt 41554935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42396196 - 42396164
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  42396196 atcaatttgaatgaatgaatatcgtttattttt 42396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 10977657 - 10977688
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  10977657 atcaatttgaatgaatgaatatcttttatttt 10977688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 20200758 - 20200727
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  20200758 atcaatttgaatgaatgaatatcttttatttt 20200727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 20202940 - 20202909
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  20202940 atcaatttgaatgaatgaatatcttttatttt 20202909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 43030097 - 43030128
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  43030097 atcaatttgaatgaatgaatatcttttatttt 43030128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4020012 - 4020046
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4020012 atcaatttgaatgaatgaatatcatttatttttgt 4020046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11819519 - 11819553
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11819519 atcaatttgaatgaatgaatatcgtttatttttgt 11819553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13701696 - 13701662
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13701696 atcaatttgaatgaatgaatatcgtttatttttgt 13701662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14585897 - 14585931
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  14585897 atcaatttgaatgaatgaatatcgtttatttttgt 14585931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19645625 - 19645659
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  19645625 atcaatttgaatgaatgaatatcgtttatttttgt 19645659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21289630 - 21289596
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  21289630 atcaatttgaatgaatgaatatcctttatttttgt 21289596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24483390 - 24483356
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24483390 atcaatttgaatgaatgaatatcgtttatttttgt 24483356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33637829 - 33637863
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  33637829 atcaatttgaatgaatgaatatcgtttatttttgt 33637863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36623957 - 36623923
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36623957 atcaatttgaatgaatgaatatcatttatttttgt 36623923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45047932 - 45047966
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  45047932 atcaatttgaatgaatgaatatcatttatttttgt 45047966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48652143 - 48652109
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  48652143 atcaatttgaatgaatgaatatcatttatttttgt 48652109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49627798 - 49627764
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  49627798 atcaatttgaatgaatgaatatcgtttatttttgt 49627764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 50520198 - 50520228
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  50520198 tcaatttgaatgaatgaatatcttttatttt 50520228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55090393 - 55090359
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  55090393 atcaatttgaatgaatgaatatcgtttatttttgt 55090359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 55455297 - 55455331
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  55455297 atcaatttgaatgaatgaatatcgtttatttttgt 55455331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2192513 - 2192545
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  2192513 atcaatttgaatgaatgaatatcgtttattttt 2192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34960623 - 34960591
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  34960623 atcaatttgaatgaatgaatatcgtttattttt 34960591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48401527 - 48401559
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  48401527 atcaatttgaatgaatgaatatcgtttattttt 48401559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50981160 - 50981128
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  50981160 atcaatttgaatgaatgaatatcgtttattttt 50981128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 51084294 - 51084262
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  51084294 atcaatttgaatgaatgaatatcgtttattttt 51084262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51487359 - 51487391
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  51487359 atcaatttgaatgaatgaatatcctttattttt 51487391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 53126260 - 53126292
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||| |||||||||||    
T  53126260 caatttgaatgaatgaatatcgtttatttttgt 53126292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 54706426 - 54706394
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  54706426 atcaatttgaatgaatgaatatcgtttattttt 54706394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 15276146 - 15276115
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  15276146 atcaatttgaatgaatgaatatcttttatttt 15276115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 22344612 - 22344581
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  22344612 atcaatttgaatgaatgaatatcttttatttt 22344581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 630484 - 630450
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  630484 atcaatttgaatgaatgaatatcttttacttttgt 630450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4882063 - 4882029
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  4882063 atcaatttgaatgaatgaatatcgtttatttttgt 4882029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10304998 - 10305032
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  10304998 atcaatttgaatgaatgaatatcctttatttttgt 10305032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11121390 - 11121424
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11121390 atcaatttgaatgaatgaatatcatttatttttgt 11121424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12872041 - 12872075
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  12872041 atcaatttgaatgaatgaatatcgtttatttttgt 12872075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12967433 - 12967399
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  12967433 atcaatttgaatgaatgaatatcatttatttttgt 12967399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13152862 - 13152896
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13152862 atcaatttgaatgaatgaatatcgtttatttttgt 13152896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13969340 - 13969306
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13969340 atcaatttgaatgaatgaatatcatttatttttgt 13969306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 15698613 - 15698643
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||||    
T  15698613 tcaatttgaatgaatgaatatcttttatttt 15698643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15790962 - 15790928
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  15790962 atcaatttgaataaatgaatatcttttatttttgt 15790928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26199994 - 26200028
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  26199994 atcaatttgaatgaatgaatatcgtttatttttgt 26200028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29205703 - 29205737
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  29205703 atcaatttgaatgaatgaatatcgtttatttttgt 29205737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34659341 - 34659307
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34659341 atcaatttgaatgaatgaatatcatttatttttgt 34659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36775526 - 36775492
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36775526 atcaatttgaatgaatgaatatcctttatttttgt 36775492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44517583 - 44517617
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44517583 atcaatttgaatgaatgaatatcgtttatttttgt 44517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46589562 - 46589596
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  46589562 atcaatttgaatgaatgaatatcatttatttttgt 46589596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 10627441 - 10627474
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||| |||||||||||    
T  10627441 tcaatttgaatgaatgaatatcgtttatttttgt 10627474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 34334795 - 34334762
Alignment:
Q  2 tcaatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||||||||||||||||||| |||||||||||    
T  34334795 tcaatttgaatgaatgaatatcgtttatttttgt 34334762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3233206 - 3233238
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  3233206 atcaatttgaatgaatgaatatcgtttattttt 3233238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8893706 - 8893738
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  8893706 atcaatttgaatgaatgaatatcatttattttt 8893738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12971783 - 12971815
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  12971783 atcaatttgaatgaatgaatatcatttattttt 12971815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25032789 - 25032757
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  25032789 atcaatttgaatgaatgaatatcgtttattttt 25032757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26771520 - 26771552
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  26771520 atcaatttgaatgaatgaatatcatttattttt 26771552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 44513700 - 44513668
Alignment:
Q  3 caatttgaatgaatgaatatcttttatttttgt 35  Q
    |||||| ||||||||||||||||||||||||||    
T  44513700 caatttaaatgaatgaatatcttttatttttgt 44513668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49652249 - 49652281
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  49652249 atcaatttgaatgaatgaatatcatttattttt 49652281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3330 - 3364
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  3330 atcaatttgaatgaatgaatatcgtttatttttgt 3364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35510 - 35544
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttatttttgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  35510 atcaatttgaatgaatgaatatcgtttatttttgt 35544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2134 - 2102
Alignment:
Q  1 atcaatttgaatgaatgaatatcttttattttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  2134 atcaatttgaatgaatgaatatcgtttattttt 2102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 11436 - 11464
Alignment:
Q  4 aatttgaatgaatgaatatcttttatttt 32  Q
    |||||||||||||||||||||||||||||    
T  11436 aatttgaatgaatgaatatcttttatttt 11464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University