View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12619_high_3 (Length: 277)
Name: NF12619_high_3
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12619_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 42009475 - 42009738
Alignment:
| Q |
1 |
tcagaaggaaattgaaaataaaaagatgccggaccttgaacaagtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcagaaagtatca |
100 |
Q |
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| T |
42009475 |
tcagaaggaaattgaaaataaaaagatgtcggaccttgaacaagtgaaaagtgtcgctttggagcttgatggtgctaaggaaacactgcagaaagtatca |
42009574 |
T |
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| Q |
101 |
gaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacagaatgcgaaa |
200 |
Q |
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| T |
42009575 |
gaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacagaatgcgaaa |
42009674 |
T |
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| Q |
201 |
ctgaatccattgttaagaatatgcatgccgagcttctgagatgtgagtcagagcttgatgtcca |
264 |
Q |
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| T |
42009675 |
ctgaatccattgttaagaatatgcatgccgagcttcagagatgtgagtcagagcttgatgtcca |
42009738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 1244813 - 1245074
Alignment:
| Q |
1 |
tcagaaggaaattgaaaataaaaagatgccggaccttgaacaagtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcagaaagtatca |
100 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1244813 |
tcagaagaaaattgaaaataaaaagatgtcggaccttgaacaagtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcagaaagtatca |
1244912 |
T |
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| Q |
101 |
gaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacagaatgcgaaa |
200 |
Q |
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| T |
1244913 |
gaagaagaaagctctcttagaagcttggtggaagctcttcggatggatttggagtatgtaaaaagagaccactcagaattgaaggaaacagaatgcgaaa |
1245012 |
T |
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| Q |
201 |
ctgaatccattgttaagaatatgcatgccgagcttctgagatgtgagtcagagcttgatgtc |
262 |
Q |
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| T |
1245013 |
ctgaatccattgttaagaatatgcatgccgagcttcagagatgtgagtcagagcttgatgtc |
1245074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 23787504 - 23787589
Alignment:
| Q |
44 |
gtgaaaagtgtcactttggagcttgatggtgctaaggaaacactgcagaaagtatcagaagaagaaagctctcttagaagcttggt |
129 |
Q |
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| T |
23787504 |
gtgaaaactgttacttcggagcttgatggtgcgaaagaatcactgcagaaagtagtagatgaagaaaacactcttcgaagcttggt |
23787589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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