View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12619_low_1 (Length: 465)

Name: NF12619_low_1
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12619_low_1
NF12619_low_1
[»] chr1 (3 HSPs)
chr1 (169-465)||(35246686-35246989)
chr1 (13-164)||(47805187-47805338)
chr1 (13-158)||(47800605-47800750)
[»] chr2 (2 HSPs)
chr2 (13-162)||(21260034-21260183)
chr2 (13-162)||(21264615-21264764)
[»] chr3 (2 HSPs)
chr3 (13-164)||(6847758-6847909)
chr3 (13-158)||(6843155-6843300)
[»] chr7 (1 HSPs)
chr7 (191-267)||(38632768-38632844)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 169 - 465
Target Start/End: Original strand, 35246686 - 35246989
Alignment:
Q  169 acatacatactcagctagagagttgatagtaatcagtaatggcttgattcaaccaattagaacaaatactat-ggggcttatagtcattctgttctcctc 267  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  35246686 acatacatactcagcttgagagttgatagtaatcagtaattgcttgattcaaccaattagaacaagtactatgggggcttataatcattctgttctcctc 35246785  T
Q  268 aaatagcctcgagtttggtgaaatattggctgctattatgaacttgnnnnnnnntccgaaagccgtttatggagaacaatgagtgagttgtgttcttcta 367  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||        ||  |  ||||||||| ||||||| |||||||||||||||||||||    
T  35246786 aaatagcctcgagtttggtgaaaatttggctgctagtatgaacttgaaaaaacatcatatggccgtttatagagaacagtgagtgagttgtgttcttcta 35246885  T
Q  368 tggacgaatgtgaatgattcaaggaaatggaacgaccaattcg------aaggagagtgaacaatgttgaaagaaacaagggagagaaactgaagaagca 461  Q
     ||||||| ||||||||||||||||||||||||||||||||||      ||||| |||||| |||||||||||||||||||||||||||||||||||||     
T  35246886 cggacgaacgtgaatgattcaaggaaatggaacgaccaattcgaagggaaaggaaagtgaaaaatgttgaaagaaacaagggagagaaactgaagaagcc 35246985  T
Q  462 aata 465  Q
    ||||    
T  35246986 aata 35246989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 47805187 - 47805338
Alignment:
Q  13 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47805187 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt 47805286  T
Q  113 aataaagatttggaaagaaataaaatgagacctactctatcagtttgacaaa 164  Q
    |||  ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  47805287 aatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaaa 47805338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 47800605 - 47800750
Alignment:
Q  13 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47800605 catagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt 47800704  T
Q  113 aataaagatttggaaagaaataaaatgagacctactctatcagttt 158  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||    
T  47800705 aatgtagatttggaaagaaataaaatgagacctactgtatcagttt 47800750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 21260034 - 21260183
Alignment:
Q  13 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21260034 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt 21260133  T
Q  113 aataaagatttggaaagaaataaaatgagacctactctatcagtttgaca 162  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  21260134 aatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca 21260183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 21264615 - 21264764
Alignment:
Q  13 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21264615 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt 21264714  T
Q  113 aataaagatttggaaagaaataaaatgagacctactctatcagtttgaca 162  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  21264715 aatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca 21264764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 6847758 - 6847909
Alignment:
Q  13 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6847758 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt 6847857  T
Q  113 aataaagatttggaaagaaataaaatgagacctactctatcagtttgacaaa 164  Q
    |||  ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  6847858 aatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaaa 6847909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 6843155 - 6843300
Alignment:
Q  13 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  6843155 catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactcttgt 6843254  T
Q  113 aataaagatttggaaagaaataaaatgagacctactctatcagttt 158  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||    
T  6843255 aatgtagatttggaaagaaataaaatgagacctactgtatcagttt 6843300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 38632768 - 38632844
Alignment:
Q  191 ttgatagtaatcagtaatggcttgattcaaccaattagaacaaatactatggggcttatagtcattctgttctcctc 267  Q
    |||| ||||||||||||||||||||||| |||||  ||||||| ||| |  ||  || |||||||||||||||||||    
T  38632768 ttgagagtaatcagtaatggcttgattcgaccaacaagaacaagtaccacaggttttttagtcattctgttctcctc 38632844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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