View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12619_low_4 (Length: 375)
Name: NF12619_low_4
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12619_low_4 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 7100620 - 7100996
Alignment:
| Q |
1 |
tccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatcac |
100 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
7100620 |
tccaaacaccacgacgaagaagcatagttttgagagaatatgaccaaagaaatcaacgatgtttcaatagtttcaagaagtgattgtgctatttcatcac |
7100719 |
T |
|
| Q |
101 |
cttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaaaaccttcacggatatctagacctctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7100720 |
cttttctaagcttattgtctacaaagaaaacaattttctttcgagataaagcttcaaccaaatggctaagaaaaccttcaaggatatctagacctctaaa |
7100819 |
T |
|
| Q |
201 |
gctaacaaaaacatcatgcttg--tcactttgaggaacagaacattgaaattccgatgtcaaactgataaacaagagataaacaaaaaatacaagattat |
298 |
Q |
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||||||||| ||||||| |||| |||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
7100820 |
gctaacaaagacatcatacttgtctcacgttgaggaacaaaacattgaaattccgatgtcaaacagatacacaagagataaacaaaaaatacaagattat |
7100919 |
T |
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| Q |
299 |
tattgtgcattgtggttcttcctttgtctctctactatacataagataggatgatataattaattcatgtcaaacag |
375 |
Q |
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| T |
7100920 |
tattgtgcattgtggttcttcctttgtctctctactctacataagataagatgatatagttaattcatgtcaaacag |
7100996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 7087008 - 7087263
Alignment:
| Q |
1 |
tccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatcac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
7087008 |
tccaaacaccattttgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaatagcttcaaaaagtgattgtgctatttcatcac |
7087107 |
T |
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| Q |
101 |
cttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaaaaccttcacggatatctagacctctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
7087108 |
cttttctaagcttattgtctacaaagaaaacaatttcctttcgagataaagcttcaaccaaatgactaagaaaaccttcacggatgtccagacctctaaa |
7087207 |
T |
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| Q |
201 |
gctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaattccgatg |
256 |
Q |
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| T |
7087208 |
gctaacaaagacatcatgcttgtcactttgaggaactgaacattgaaattccgatg |
7087263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7069942 - 7070189
Alignment:
| Q |
1 |
tccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||| ||||||| |||||| | || |||||||| | |
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| T |
7069942 |
tccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaattgcttcaaaaagtgactgtgatatttcatttc |
7070041 |
T |
|
| Q |
101 |
cttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaaaaccttcacggatatctagacctctaaa |
200 |
Q |
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||||| ||||||||| |||||||||| |||||||||||||| |||| | ||||| || |||||| ||||||| |||||||||||||| |||| | ||| |
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| T |
7070042 |
cttttgtaagcttatagtctacaaagtaaacaattttcttttgagaaaaagctttaatcaaatgaggaagaaaaacttcacggatatctggaccccgaaa |
7070141 |
T |
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| Q |
201 |
gctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaa |
248 |
Q |
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| T |
7070142 |
gctaacaaagacatcatacttgtgaatttgaggaacagaagattgaaa |
7070189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 7087320 - 7087389
Alignment:
| Q |
265 |
ataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctact |
334 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
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| T |
7087320 |
ataaacaagagacaaacaaaaaatacaagattaatattgtgcattgtggatcttcctttgtgtctctact |
7087389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 7070253 - 7070331
Alignment:
| Q |
264 |
gataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactatacataagat |
345 |
Q |
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| T |
7070253 |
gataaacaaaagacaaacaaaaaatgcacgattaat---gtgcattgtggattttcctttgtctctctactctacataagat |
7070331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7028762 - 7028695
Alignment:
| Q |
1 |
tccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat |
68 |
Q |
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|||||||||||| |||||| ||| ||||| |||| ||||||||||| |||||||| ||| ||||||| |
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| T |
7028762 |
tccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttttcaat |
7028695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 4220801 - 4220850
Alignment:
| Q |
4 |
aaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat |
53 |
Q |
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| T |
4220801 |
aaacaccaatgtgaagaagcatagttttcagagaatatgaccaatgaaat |
4220850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 4003299 - 4003369
Alignment:
| Q |
4 |
aaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttc |
74 |
Q |
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| T |
4003299 |
aaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgatccttcaattgcttc |
4003369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 3811990 - 3812039
Alignment:
| Q |
4 |
aaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat |
53 |
Q |
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| T |
3811990 |
aaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaat |
3812039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 3821563 - 3821612
Alignment:
| Q |
4 |
aaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat |
53 |
Q |
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| T |
3821563 |
aaacaccaatgtgaagaagcatagttttttgagaatatgaccaatgaaat |
3821612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 3825818 - 3825867
Alignment:
| Q |
4 |
aaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat |
53 |
Q |
| |
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||||||||| ||||||||||||||| ||| |||||||||| ||| ||||| |
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| T |
3825818 |
aaacaccaacatgaagaagcatagtcttgtgagaatatgatcaaggaaat |
3825867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 3953106 - 3953034
Alignment:
| Q |
4 |
aaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaa |
76 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||| ||| ||||| || ||| |||||| ||||||| |
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| T |
3953106 |
aaacaccaacgtgaagaagcatagttttctgagaatatgatcaatgaaatgaacgatccttcaattgcttcaa |
3953034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 12782174 - 12782211
Alignment:
| Q |
3 |
caaacaccaagatgaagaagcatagttttgagagaata |
40 |
Q |
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| T |
12782174 |
caaacaccaagttgaagaagcatagtttttagagaata |
12782211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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