View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12619_low_5 (Length: 357)
Name: NF12619_low_5
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12619_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 41306741 - 41307068
Alignment:
| Q |
20 |
ttcattggtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataatcaattcatcatctaccactcttaat |
119 |
Q |
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| T |
41306741 |
ttcattggtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataattaattcatcatctaccactcttaat |
41306840 |
T |
|
| Q |
120 |
tggagaaaatgaagtattgaagtctttcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41306841 |
tggagaaaatgaagtattgaagtctttcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcaccgaggaattttcatgcattcc |
41306940 |
T |
|
| Q |
220 |
ttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcacagttaatgga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
41306941 |
ttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatgga |
41307040 |
T |
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| Q |
320 |
gttggaattgctcttgagttatcctatg |
347 |
Q |
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| T |
41307041 |
gttggaattgctcttgagttatcctatg |
41307068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 347
Target Start/End: Original strand, 41296882 - 41297206
Alignment:
| Q |
27 |
gtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataatcaattcatcatctaccactcttaattggagaa |
126 |
Q |
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| T |
41296882 |
gtgttcttacaggcaatgctgcctcagtctcactttatgctgcgccaatgtgagtaacatatcataatcaattcattag-taccactcattatctaccaa |
41296980 |
T |
|
| Q |
127 |
aatgaagtattgaagtctt-----tcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattcctt |
221 |
Q |
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|||||||| ||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41296981 |
aatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattcctt |
41297080 |
T |
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| Q |
222 |
acataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcacagttaatggagt |
321 |
Q |
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| T |
41297081 |
acataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcacagttaatggagt |
41297180 |
T |
|
| Q |
322 |
tggaattgctcttgagttatcctatg |
347 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
41297181 |
tggaattgctcttgagttatcttatg |
41297206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 164 - 329
Target Start/End: Complemental strand, 9612269 - 9612104
Alignment:
| Q |
164 |
gttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatg |
263 |
Q |
| |
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||||| || ||||| || |||||||| |||||||| |||||||||||||| |||||||||| || ||| | ||||| ||||| |||||||| ||||||| |
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| T |
9612269 |
gttactttcaaaagggtgataaggaaaaaaagcactgaggaattttcatgtattccttacactataggactattgaactgtctccttttcacttggtatg |
9612170 |
T |
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| Q |
264 |
ggttacctattgtaagctacaaatgggaaaattttcctcttgtcacagttaatggagttggaattg |
329 |
Q |
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| || ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9612169 |
gattgcctattgtaagtaacaagtgggaaaattttcctcttgtcactgttaatggagttggaattg |
9612104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 9612413 - 9612352
Alignment:
| Q |
30 |
ttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacat |
91 |
Q |
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|||||||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||||||| |
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| T |
9612413 |
ttcttgcaggaaatgttgcatcagtgtcactttatgctgcaccaatgtatgttacataacat |
9612352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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