View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12619_low_6 (Length: 306)
Name: NF12619_low_6
Description: NF12619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12619_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 7100253 - 7100526
Alignment:
| Q |
17 |
atacacacttgaaagatttgtttcacatagatggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatata |
116 |
Q |
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| T |
7100253 |
atacacacttgaaagatttgtttcacatagatggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatataca |
7100352 |
T |
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| Q |
117 |
tgtagagcaatccaaagacaatgataaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcag |
216 |
Q |
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| T |
7100353 |
tgtagagcaatccagagacaatgataaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcag |
7100452 |
T |
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| Q |
217 |
atctccactgtttcaccctaattgaattgtactttttgtcatgttcgacaaattcatctgcataagttcccttc |
290 |
Q |
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| T |
7100453 |
atctccactgtttcaccctacttgaattgtactttttgtcatgttcaacaaattcatttgcataagttcccttc |
7100526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 156 - 290
Target Start/End: Original strand, 7086780 - 7086914
Alignment:
| Q |
156 |
aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt |
255 |
Q |
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| T |
7086780 |
aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt |
7086879 |
T |
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| Q |
256 |
catgttcgacaaattcatctgcataagttcccttc |
290 |
Q |
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| T |
7086880 |
catgttctgcaaatgcatttgcataagtccccttc |
7086914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
| Q |
149 |
gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac |
224 |
Q |
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| T |
7078231 |
gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac |
7078306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 7069799 - 7069844
Alignment:
| Q |
241 |
aattgtactttttgtcatgttcgacaaattcatctgcataagttcc |
286 |
Q |
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| T |
7069799 |
aattgtacttttgttcatgttcaacaaatgcatctgcataagttcc |
7069844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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