View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_high_13 (Length: 296)
Name: NF1261_high_13
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 10866476 - 10866222
Alignment:
| Q |
13 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866476 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10866377 |
T |
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| Q |
113 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866376 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10866277 |
T |
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| Q |
213 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866276 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
10866222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 10873829 - 10874083
Alignment:
| Q |
13 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873829 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10873928 |
T |
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| Q |
113 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
212 |
Q |
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| T |
10873929 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10874028 |
T |
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| Q |
213 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874029 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
10874083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 10878900 - 10879154
Alignment:
| Q |
13 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878900 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10878999 |
T |
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| Q |
113 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879000 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10879099 |
T |
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| Q |
213 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879100 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
10879154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 10883971 - 10884225
Alignment:
| Q |
13 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883971 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10884070 |
T |
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| Q |
113 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884071 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10884170 |
T |
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| Q |
213 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884171 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgtta |
10884225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 10887948 - 10888152
Alignment:
| Q |
63 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
162 |
Q |
| |
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||||| || ||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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| T |
10887948 |
tcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
10888047 |
T |
|
| Q |
163 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
262 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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| T |
10888048 |
ctgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
10888147 |
T |
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| Q |
263 |
tgtta |
267 |
Q |
| |
|
||||| |
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| T |
10888148 |
tgtta |
10888152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 39675999 - 39675807
Alignment:
| Q |
63 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
162 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||| |
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| T |
39675999 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
39675900 |
T |
|
| Q |
163 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaa |
255 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
39675899 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaa |
39675807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 10045975 - 10045800
Alignment:
| Q |
80 |
atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga |
179 |
Q |
| |
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|||||| |||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || ||| |
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| T |
10045975 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
10045876 |
T |
|
| Q |
180 |
ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaa |
255 |
Q |
| |
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||||| |||||||||||||| ||||||||||||| |||||||| || |||||||||||||| ||||| ||||||| |
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| T |
10045875 |
ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaa |
10045800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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