View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_high_23 (Length: 205)
Name: NF1261_high_23
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 45970324 - 45970470
Alignment:
| Q |
52 |
atagcaggaacaatattcactgtgaacctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttcc |
151 |
Q |
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| T |
45970324 |
atagcaggaacaatattcactgtgaacctaaatagcatgccgcgtaacataattttaatgtagcactattgataagagtttggttacagttatttcttcc |
45970423 |
T |
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| Q |
152 |
ttaataa-gttcacggtattaacatcctgaccaatggtacctatgct |
197 |
Q |
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| T |
45970424 |
ttaataaggttcacggtattaacatcctgaccaatggtacctatgct |
45970470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 45974861 - 45975006
Alignment:
| Q |
53 |
tagcaggaacaatattcactgtgaacctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttcct |
152 |
Q |
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| T |
45974861 |
tagcaggaaaaaggttcaatgtgaacctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctccct |
45974960 |
T |
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| Q |
153 |
taataa-gttcacggtattaacatcctgaccaatggtacctatgct |
197 |
Q |
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| T |
45974961 |
taataaggttcacggtattaacatcctgacctatggcacctatgct |
45975006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 6625630 - 6625577
Alignment:
| Q |
6 |
atccacaaagagtaattggtaaagagaactgttcgatattggtagcatagcagg |
59 |
Q |
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| T |
6625630 |
atccacaaagagtaattggaaaagagcactcttcgatattggtagcatagcagg |
6625577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 6591999 - 6591946
Alignment:
| Q |
6 |
atccacaaagagtaattggtaaagagaactgttcgatattggtagcatagcagg |
59 |
Q |
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| T |
6591999 |
atccacaaagagtaattggaaaagagaactctttgatattggtggaatagcagg |
6591946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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