View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261_high_7 (Length: 423)

Name: NF1261_high_7
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261_high_7
NF1261_high_7
[»] chr4 (13 HSPs)
chr4 (13-395)||(6625250-6625630)
chr4 (314-395)||(6591918-6591999)
chr4 (314-395)||(6536756-6536837)
chr4 (314-395)||(6793681-6793762)
chr4 (313-395)||(6648385-6648467)
chr4 (314-395)||(6813055-6813133)
chr4 (317-395)||(6833632-6833710)
chr4 (316-395)||(6770756-6770835)
chr4 (313-391)||(6750189-6750267)
chr4 (314-391)||(6549081-6549158)
chr4 (314-395)||(6712978-6713059)
chr4 (17-49)||(6717062-6717094)
chr4 (314-388)||(6501043-6501117)
[»] scaffold0373 (1 HSPs)
scaffold0373 (314-395)||(12542-12623)
[»] scaffold0552 (1 HSPs)
scaffold0552 (314-395)||(527-605)
[»] scaffold0813 (1 HSPs)
scaffold0813 (17-49)||(1582-1614)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 6625250 - 6625630
Alignment:
Q  13 aatattagaaaagttgaatggaggattaaagaacacatatgtatattagattcataaaagaattttatagtatataacagttgatacttctatagagacc 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6625250 aatattagaaaagttgaatggaggattaaagaacacatacgtatattagattcataaaagaattttatagtatataacagttgatacttctatagagacc 6625349  T
Q  113 gatgtttatttagacaatattgtgtttatttcgatttcaaagttatccaaaatggcttttcattgcaaccacttttagactttgtaattattattttaaa 212  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6625350 gatgtttatacagacaatattgtgtttatttcgatttcaaagttatccaaaatggcttttcattgcaaccacttttagactttgtaattattattttaaa 6625449  T
Q  213 agagagtgattttaaaatgcactctcttatattatttcacagctaagtcggaagaatttcaaagcatcacaaacaatattctannnnnnnnnnnnnnnnn 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                     
T  6625450 agagagtgattttaaaatgcactctcttatattatttcacagctaagtcggaagaatttcaaaggatcacaaacaatattcta--agagagagagagaga 6625547  T
Q  313 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6625548 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagtgctcttttccaattactctttgtggat 6625630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 6591918 - 6591999
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||    
T  6591918 aaataacctggaatctatgaggacaaaccctgctattccaccaatatcaaagagttctcttttccaattactctttgtggat 6591999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 6536756 - 6536837
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||| | ||| |||||| ||||||||||||||||||||    
T  6536756 aaataacctggaatctttgagtacaaaccctgctatgccaccaatatcaatgaggtctcttctccaattactctttgtggat 6536837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 6793762 - 6793681
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||| |||||||||||| |||||||||||    
T  6793762 aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggat 6793681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 6648467 - 6648385
Alignment:
Q  313 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    ||||| ||||||||||| |||||||||| ||||||||||  |||||||| | ||| |||||||||||||||||||||||||||    
T  6648467 aaaatgacctggaatctttgagtacaaagcctgctatgccgccaatatcaatgaggtctcttttccaattactctttgtggat 6648385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 6813133 - 6813055
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||||| ||   |||||||||||||||||||||||||||||    
T  6813133 aaataaactggaatctaggagtacaaaccctgctatgccaccaatattga---gttctcttttccaattactctttgtggat 6813055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 6833710 - 6833632
Alignment:
Q  317 taacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||||||| ||| ||||||||| || ||||||| ||||||||| ||||| |||||| |||||||||||||| |||||    
T  6833710 taacctggaacctaagagtacaaacccagctatgccaccaatatcaaagagatctcttctccaattactctttttggat 6833632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 6770835 - 6770756
Alignment:
Q  316 ataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||||||||||||||||   |||||||| ||||| || ||||||||||| ||| ||| |||| |||||||||||||||    
T  6770835 ataacctggaatctatgagggtaaaacctgatatgccacaaatatcgaagatttcccttctccagttactctttgtggat 6770756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 6750267 - 6750189
Alignment:
Q  313 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgt 391  Q
    |||| ||||||||||||||||| ||||| || ||| ||| ||||||||| | ||| |||||| ||||||||||||||||    
T  6750267 aaaaaaacctggaatctatgaggacaaacccagctgtgccaccaatatcaatgaggtctcttctccaattactctttgt 6750189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 6549081 - 6549158
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgt 391  Q
    ||||||||| |||| |||||| ||||| |||| ||||| || |||||| ||||| |||||| ||||||||||||||||    
T  6549081 aaataaccttgaatttatgaggacaaaccctgatatgccacaaatatcaaagagctctcttctccaattactctttgt 6549158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 6713059 - 6712978
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||||||||||||| ||| || ||| ||  || ||| ||||||||| | ||| |||||| ||||||||||||||||||||    
T  6713059 aaataacctggaatctgtgactataaacccatctttgccaccaatatcaatgaggtctcttctccaattactctttgtggat 6712978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6717094 - 6717062
Alignment:
Q  17 ttagaaaagttgaatggaggattaaagaacaca 49  Q
    |||||||||||||||||||||||||||||||||    
T  6717094 ttagaaaagttgaatggaggattaaagaacaca 6717062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 6501043 - 6501117
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctt 388  Q
    ||||||||||||||| ||||||||||  ||||||||||  ||||||||   ||| |||||| |||||| ||||||    
T  6501043 aaataacctggaatcaatgagtacaatgcctgctatgcccccaatatcactgaggtctcttctccaatcactctt 6501117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 12542 - 12623
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||| |||||||||||| |||||| ||||    
T  12542 aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttggggat 12623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 605 - 527
Alignment:
Q  314 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 395  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||||| ||   |||||||||||||||||||||||||||||    
T  605 aaataaactggaatctaggagtacaaaccctgctatgccaccaatattga---gttctcttttccaattactctttgtggat 527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 1582 - 1614
Alignment:
Q  17 ttagaaaagttgaatggaggattaaagaacaca 49  Q
    |||||||||||||||||||||||||||||||||    
T  1582 ttagaaaagttgaatggaggattaaagaacaca 1614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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