View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_10 (Length: 397)
Name: NF1261_low_10
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 7471167 - 7470809
Alignment:
| Q |
10 |
aagaatataggaaaataaatgcttcatcttactcttttgttttggtttcttttcaaccaagtcatggaatggtgtttgtgttccactctgagattcagct |
109 |
Q |
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| T |
7471167 |
aagaaaataggaaaataaatgcttcatcttactcttttgttttggtttcttttcaaccaagtcatggaatggtgtttgtgttccactctgagattcagct |
7471068 |
T |
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| Q |
110 |
tgagatccagattgatctcgactttcatccaatgtgagactgttaacagcttctgctcctccatcgggtcctagagtctcattctcaacaggggacacta |
209 |
Q |
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| T |
7471067 |
tgagatccagattgatctcgactttcatccaatatgagactgttaacagcttctgctcctccatcgggtcctagagtctcattctcaacagtggacacta |
7470968 |
T |
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| Q |
210 |
agctagctgtcgtatgttgcacatttgaactttcttcttcaatttcgaaatcaacgcgatcagtacagattggttttatgcttgcaagtgcattaatctt |
309 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7470967 |
agctagctgtagtatgttgcacatttgaactttcttcttcaatttcgaaatcaacgcgatcagtacagattggttttatgcttgcaagtgcattaatctt |
7470868 |
T |
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| Q |
310 |
ggctgtgtaaagatcaaagagaatccttatcagtatttcagtgatttccttgaattctg |
368 |
Q |
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| T |
7470867 |
ggctgtgtaaagatcaaagagaatgcttatcagtatttcagtgatttccttgaattctg |
7470809 |
T |
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