View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_12 (Length: 355)
Name: NF1261_low_12
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 107 - 339
Target Start/End: Original strand, 24208201 - 24208432
Alignment:
| Q |
107 |
aataatattcaagagtctagaacttgtaacttctttggcacaaaatcatcttcagccaacttctgctacgatattcaccctattcaggtgcagatttaaa |
206 |
Q |
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| T |
24208201 |
aataatattcaagagtctagaacttgtaacttctttggcacaaaatcatcttcagccaacttctgctacgatat-caccctattcaggtgcagatttaaa |
24208299 |
T |
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| Q |
207 |
ctatactggtgcaacacaaggagatgtgagttccattctgtgtaatgtagagggtcctggcttaaatttcagatctcttgaagctaataacggttttgag |
306 |
Q |
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| T |
24208300 |
ctatactggtgcaacacaaggagatgtgagttccattctgtgtaatgtagagggtcctggcttaaatttcagatctcttgaagctaataacggttttgag |
24208399 |
T |
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| Q |
307 |
tcaataatataaatcacttctcatcaacttctc |
339 |
Q |
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| T |
24208400 |
tcaataatataaatcacttctcatcgacttctc |
24208432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 24208159 - 24208188
Alignment:
| Q |
64 |
ttttccatttttgtcatgacattgttagta |
93 |
Q |
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| T |
24208159 |
ttttccatttttgtcatgacattgttagta |
24208188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 10338673 - 10338609
Alignment:
| Q |
27 |
tcagttacatgcttaaagtttggagcaatccctacaattttccatttttgtcatgacattgttag |
91 |
Q |
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| T |
10338673 |
tcagttacatgcttagagtctggtgcaatacctgcaattttccatttttgtcatgacattgttag |
10338609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 29877309 - 29877210
Alignment:
| Q |
189 |
ttcaggtgcagattt-aaactatactggtgcaacacaaggagatgtgagttccattctgtgtaatgtagagggtcctggcttaaatttcagatctcttga |
287 |
Q |
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| T |
29877309 |
ttcagatgcagattttaaactattattgtgcaacacaaggagatgtgagttccattctttataacgcagatggtattgacctaaatttcagatctgttga |
29877210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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