View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1261_low_14 (Length: 350)
Name: NF1261_low_14
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 84 - 331
Target Start/End: Complemental strand, 3228545 - 3228297
Alignment:
| Q |
84 |
ggtgctgcattgcaatgtgctattcttagcccaacgtttaaagtgcgagagtttcaggtaacatttcttcggcatttggttt-gtgagtttacttggtta |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3228545 |
ggtgctgcattgcaatgtgctattcttagcccaacgtttaaagtgcgagaatttcaggtaacatttcttcggcatttggttttgtgagtttacttggtta |
3228446 |
T |
|
| Q |
183 |
ttgttttccattcctatttcttctactcataataaaagtgtgctcttttcggaataatgaatttttacattttcaaagctattttaattgcttatctttg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3228445 |
ttgttttccattcctatttcttctactcataataaaagtgtgttcctttcggaataatgaatttttacattttcaaagctattttaattgcttatctttg |
3228346 |
T |
|
| Q |
283 |
gtatatacctctgttaaggccttaatgaattttcacgcgggtttctttt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3228345 |
gtatatacctctgttaaggccttaatgaattttcacgcgggtttctttt |
3228297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 49011367 - 49011307
Alignment:
| Q |
27 |
agtagctagaatatgtcacattttatgtgggatatatggcttcg-ttcttttgtctgtggt |
86 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
49011367 |
agtagctagaatatgtcaaattttatgtgggatatatggcttcgtttcttctgtctgtggt |
49011307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 38184014 - 38183955
Alignment:
| Q |
27 |
agtagctagaatatgtcacattttatgtgggatatatggcttcgttcttttgtctgtggt |
86 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
38184014 |
agtagctagaatgtgtcacattttatgtgggatatattgtttctttcttctgtctgtggt |
38183955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 43971284 - 43971344
Alignment:
| Q |
84 |
ggtgctgcattgcaatgtgctattcttagcccaacgtttaaagtgcgagagtttcaggtaa |
144 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
43971284 |
ggtgctgcattgcagtgtgcaattcttagtccaacttttaaagtacgagagttccaggtaa |
43971344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University