View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_16 (Length: 326)
Name: NF1261_low_16
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 50 - 316
Target Start/End: Original strand, 9060412 - 9060678
Alignment:
| Q |
50 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaaactctaatatattatctaactatagagttagaatttgtgttagacttaagagac |
149 |
Q |
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| T |
9060412 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaaactctaatatattatctaactatagagttagaatttgtgttagacttaagagac |
9060511 |
T |
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| Q |
150 |
ataatcatataaaactgacttgtaaggtgaaaattgtctctacttgtaaacttatgttgtgatcttttccgatttaattaatatgtgactcttaatatta |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9060512 |
ataatcatataaaactgacttgtaaggtgaaaattgtctctacttgtaaacttatgttgtggccttttccgatttaattaatatgtgactcttaatatta |
9060611 |
T |
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| Q |
250 |
gcttgactagtatgaggtcaattttcttttcaatgttaaatattagcttgtctctattatgttcatc |
316 |
Q |
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| T |
9060612 |
gcttgactagtatgaggtcaattttcttttcaatgttaaatattagcttgtctctattatgttcatc |
9060678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 9063708 - 9063755
Alignment:
| Q |
50 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaaac |
97 |
Q |
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| T |
9063708 |
tgatgatgacgatgatggtggttatgactatgctcccgctgcttaaac |
9063755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 9072774 - 9072824
Alignment:
| Q |
50 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaaactct |
100 |
Q |
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| T |
9072774 |
tgatgatgacgatgatggtggctatgactatgctcctgctgcttaaactct |
9072824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 9077400 - 9077453
Alignment:
| Q |
50 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaaactctaat |
103 |
Q |
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|||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |
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| T |
9077400 |
tgatgatgacgacgatggtgattatgattatgctcccgccgcttaaactctaat |
9077453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 49011367 - 49011333
Alignment:
| Q |
6 |
agtagctagaatatgtcacattttatgtgggatat |
40 |
Q |
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| T |
49011367 |
agtagctagaatatgtcaaattttatgtgggatat |
49011333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 35346054 - 35346009
Alignment:
| Q |
51 |
gatgatgacgatgatggtggatatgattatgctcccgctgcttaaa |
96 |
Q |
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| T |
35346054 |
gatgatgacgatgatggtggttatgactatgctcccgctgcgtaaa |
35346009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 35351073 - 35351019
Alignment:
| Q |
50 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaa-actctaat |
103 |
Q |
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||||||||||||||||||||| ||||| || ||||||||||| ||| |||||||| |
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| T |
35351073 |
tgatgatgacgatgatggtggttatgactacgctcccgctgcataagactctaat |
35351019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 35374352 - 35374306
Alignment:
| Q |
50 |
tgatgatgacgatgatggtggatatgattatgctcccgctgcttaaa |
96 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||| |||| |
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| T |
35374352 |
tgatgatgacgatgacggtggttatgactatgctcccgctgcataaa |
35374306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 38184014 - 38183980
Alignment:
| Q |
6 |
agtagctagaatatgtcacattttatgtgggatat |
40 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
38184014 |
agtagctagaatgtgtcacattttatgtgggatat |
38183980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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