View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261_low_19 (Length: 321)

Name: NF1261_low_19
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261_low_19
NF1261_low_19
[»] chr6 (11 HSPs)
chr6 (96-236)||(21150835-21150977)
chr6 (97-141)||(33726648-33726692)
chr6 (262-321)||(5462671-5462730)
chr6 (264-303)||(10031573-10031612)
chr6 (264-293)||(6751899-6751928)
chr6 (245-286)||(17302577-17302618)
chr6 (264-293)||(19369830-19369859)
chr6 (264-293)||(29959188-29959217)
chr6 (232-292)||(2140466-2140526)
chr6 (264-292)||(9024193-9024221)
chr6 (264-292)||(10157998-10158026)
[»] chr4 (11 HSPs)
chr4 (264-303)||(37496707-37496746)
chr4 (264-312)||(18513258-18513306)
chr4 (262-292)||(26276024-26276054)
chr4 (264-293)||(13307890-13307919)
chr4 (264-300)||(5176990-5177026)
chr4 (264-292)||(5654608-5654636)
chr4 (264-292)||(10546162-10546190)
chr4 (265-293)||(28663505-28663533)
chr4 (264-292)||(34589723-34589751)
chr4 (266-306)||(35480154-35480194)
chr4 (264-308)||(44362664-44362708)
[»] chr5 (7 HSPs)
chr5 (245-292)||(41558652-41558699)
chr5 (264-306)||(11596472-11596514)
chr5 (254-293)||(30080508-30080547)
chr5 (264-306)||(26205777-26205819)
chr5 (266-303)||(28296331-28296368)
chr5 (262-303)||(38749578-38749619)
chr5 (264-292)||(43208291-43208319)
[»] chr2 (5 HSPs)
chr2 (238-303)||(40681985-40682050)
chr2 (231-306)||(4882680-4882755)
chr2 (264-303)||(18570975-18571014)
chr2 (264-293)||(43586022-43586051)
chr2 (260-288)||(12933749-12933777)
[»] chr1 (8 HSPs)
chr1 (237-293)||(24462260-24462316)
chr1 (262-292)||(40747788-40747818)
chr1 (264-293)||(18946051-18946080)
chr1 (264-292)||(3921681-3921709)
chr1 (264-292)||(11571599-11571627)
chr1 (264-292)||(14332422-14332450)
chr1 (234-286)||(28170401-28170453)
chr1 (264-316)||(29230055-29230107)
[»] chr8 (9 HSPs)
chr8 (264-299)||(1639497-1639532)
chr8 (264-303)||(31548310-31548349)
chr8 (262-292)||(34201061-34201091)
chr8 (265-298)||(1591307-1591340)
chr8 (264-293)||(31119100-31119129)
chr8 (264-293)||(42874535-42874564)
chr8 (264-292)||(10441217-10441245)
chr8 (262-298)||(18964185-18964221)
chr8 (264-292)||(29198496-29198524)
[»] chr7 (8 HSPs)
chr7 (264-303)||(35238201-35238240)
chr7 (264-303)||(38134423-38134462)
chr7 (231-293)||(1885586-1885648)
chr7 (264-293)||(2143870-2143899)
chr7 (264-293)||(2144556-2144585)
chr7 (264-293)||(5937438-5937467)
chr7 (262-303)||(23165403-23165444)
chr7 (264-292)||(44172907-44172935)
[»] scaffold0008 (1 HSPs)
scaffold0008 (231-292)||(263356-263417)
[»] chr3 (2 HSPs)
chr3 (264-300)||(24399660-24399696)
chr3 (264-292)||(40017386-40017414)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 21150835 - 21150977
Alignment:
Q  96 gtacaggatcaacttgaagatgtaaaacttattatggataaatttactccata---acttaataatgacattgcaccatttatcattttttcagttcgag 192  Q
    ||||||||||||||| |||||||||||||||||||||| |||| || |||||    | |||||||||  ||||||||||||||||| |||||||||||||    
T  21150835 gtacaggatcaacttcaagatgtaaaacttattatggagaaatgta-tccattgttatttaataatgttattgcaccatttatcatattttcagttcgag 21150933  T
Q  193 atgatgtatgttgaaccaacacattgaaggcgtgttctgtgtct 236  Q
    ||||| ||||||| || |||||||||||||||||||| ||||||    
T  21150934 atgatatatgttgcactaacacattgaaggcgtgttccgtgtct 21150977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 33726648 - 33726692
Alignment:
Q  97 tacaggatcaacttgaagatgtaaaacttattatggataaattta 141  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||    
T  33726648 tacaggaacaacttgaagaggtaaaacttattatggagaaattta 33726692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 5462730 - 5462671
Alignment:
Q  262 taattacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgat 321  Q
    |||||||| |||||||||| |||||||||||  |||| |||| |||||||||||| ||||    
T  5462730 taattacaatgaattatgtgattttctcaaattattaacggtgtcagtgtcgtgtccgat 5462671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 10031612 - 10031573
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  10031612 attacattgaattatgtcattttctcaaaattttatcggt 10031573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 6751899 - 6751928
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  6751899 attacattgaattatgtcattttctcaaaa 6751928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 17302618 - 17302577
Alignment:
Q  245 cacgacaatgatacttttaattacattgaattatgtcatttt 286  Q
    ||||||||||| |||| ||||||||||||||||||| |||||    
T  17302618 cacgacaatgacacttgtaattacattgaattatgtgatttt 17302577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 19369859 - 19369830
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  19369859 attacattgaattatgtcattttctcaaaa 19369830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 29959217 - 29959188
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaa 29959188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 2140466 - 2140526
Alignment:
Q  232 tgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaa 292  Q
    |||| ||||||| ||||| | |||||  | || ||||||||||||||||||||||||||||    
T  2140466 tgtccgacaccaacacgatattgatatgtatagttacattgaattatgtcattttctcaaa 2140526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 9024193 - 9024221
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  9024193 attacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 10158026 - 10157998
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  10158026 attacattgaattatgtcattttctcaaa 10157998  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 37496746 - 37496707
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37496746 attacattgaattatgtcattttctcaaaaaattatcggt 37496707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 18513258 - 18513306
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtc 312  Q
    |||||||||||||||||||||||||||||  ||||||||| || |||||    
T  18513258 attacattgaattatgtcattttctcaaattattatcggtgtctgtgtc 18513306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 26276024 - 26276054
Alignment:
Q  262 taattacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||||    
T  26276024 taattacattgaattatgtcattttctcaaa 26276054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 13307919 - 13307890
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  13307919 attacattgaattatgtcattttctcaaaa 13307890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 5177026 - 5176990
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatc 300  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  5177026 attacattgaattatgttattttctcaaaatattatc 5176990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 5654608 - 5654636
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  5654608 attacattgaattatgtcattttctcaaa 5654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 10546190 - 10546162
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaa 10546162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 28663533 - 28663505
Alignment:
Q  265 ttacattgaattatgtcattttctcaaaa 293  Q
    |||||||||||||||||||||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaa 28663505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 34589723 - 34589751
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  34589723 attacattgaattatgtcattttctcaaa 34589751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 35480194 - 35480154
Alignment:
Q  266 tacattgaattatgtcattttctcaaaaaattatcggtatc 306  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  35480194 tacattgaattatgtcattttctaaaaaaataatcagtatc 35480154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 44362708 - 44362664
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggtatcag 308  Q
    |||||||| |||||||||||||||||||||  |||||||| ||||    
T  44362708 attacattaaattatgtcattttctcaaaattttatcggtgtcag 44362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 41558652 - 41558699
Alignment:
Q  245 cacgacaatgatacttttaattacattgaattatgtcattttctcaaa 292  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||||    
T  41558652 cacgacactgacacatttaattacattgaattatgtcattttctcaaa 41558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 11596472 - 11596514
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggtatc 306  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  11596472 attacattgaattatgtcattttctcaaattattatcggtatc 11596514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 30080508 - 30080547
Alignment:
Q  254 gatacttttaattacattgaattatgtcattttctcaaaa 293  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  30080508 gatacttgtgattacattgaattatgtcattttctcaaaa 30080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 26205777 - 26205819
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggtatc 306  Q
    |||||| |||||||||||||||||||||||  |||||||||||    
T  26205777 attacactgaattatgtcattttctcaaaattttatcggtatc 26205819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 28296368 - 28296331
Alignment:
Q  266 tacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    |||||||||||||||||||||||||||  |||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggt 28296331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 38749578 - 38749619
Alignment:
Q  262 taattacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    ||||||||||||||||||||||||| |||||  |||||||||    
T  38749578 taattacattgaattatgtcattttttcaaattattatcggt 38749619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 43208291 - 43208319
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  43208291 attacattgaattatgtcattttctcaaa 43208319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 40682050 - 40681985
Alignment:
Q  238 acaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    |||||| ||||||| ||| || |  ||||||||||||||||||||||||||||||  |||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcggt 40681985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 4882680 - 4882755
Alignment:
Q  231 gtgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaaaattatcggtatc 306  Q
    ||||||||||||  |||||||  || |||| |||||||| |||||||| ||||||| ||||| ||||| |||||||    
T  4882680 gtgtctgacaccgacacgacatcgacacttgtaattacactgaattatatcattttttcaaataattagcggtatc 4882755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 18571014 - 18570975
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  18571014 attacattgaattatgtcattttctcaaattattatcggt 18570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 43586022 - 43586051
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  43586022 attacattgaattatgtcattttctcaaaa 43586051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 12933749 - 12933777
Alignment:
Q  260 tttaattacattgaattatgtcattttct 288  Q
    |||||||||||||||||||||||||||||    
T  12933749 tttaattacattgaattatgtcattttct 12933777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 24462260 - 24462316
Alignment:
Q  237 gacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaa 293  Q
    ||||||| ||||||| ||| |||| | ||||||||||||||||||||||| ||||||    
T  24462260 gacaccaacacgacactgaaacttgtgattacattgaattatgtcattttttcaaaa 24462316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 40747788 - 40747818
Alignment:
Q  262 taattacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||||    
T  40747788 taattacattgaattatgtcattttctcaaa 40747818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 18946051 - 18946080
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  18946051 attacattgaattatgtcattttctcaaaa 18946080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 3921709 - 3921681
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  3921709 attacattgaattatgtcattttctcaaa 3921681  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 11571627 - 11571599
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaa 11571599  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 14332450 - 14332422
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  14332450 attacattgaattatgtcattttctcaaa 14332422  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 28170453 - 28170401
Alignment:
Q  234 tctgacaccatcacgacaatgatacttttaattacattgaattatgtcatttt 286  Q
    |||||||||| || |||| ||| |||| | |||||||||||||||||||||||    
T  28170453 tctgacaccaacatgacactgacacttgttattacattgaattatgtcatttt 28170401  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 29230107 - 29230055
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgt 316  Q
    |||||||| ||||||||||||||||||||  |||| |||| ||| ||||||||    
T  29230107 attacattcaattatgtcattttctcaaattattaccggtgtcaatgtcgtgt 29230055  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 1639532 - 1639497
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattat 299  Q
    |||||||||||||||||||||||||||||| |||||    
T  1639532 attacattgaattatgtcattttctcaaaatattat 1639497  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 31548310 - 31548349
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  31548310 attacattgaattatgtcattttatcaaataattatcggt 31548349  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 34201061 - 34201091
Alignment:
Q  262 taattacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||||    
T  34201061 taattacattgaattatgtcattttctcaaa 34201091  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 1591340 - 1591307
Alignment:
Q  265 ttacattgaattatgtcattttctcaaaaaatta 298  Q
    ||||||||||||||||||||||||||||| ||||    
T  1591340 ttacattgaattatgtcattttctcaaaatatta 1591307  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 31119129 - 31119100
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  31119129 attacattgaattatgtcattttctcaaaa 31119100  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 42874564 - 42874535
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  42874564 attacattgaattatgtcattttctcaaaa 42874535  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 10441245 - 10441217
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaa 10441217  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 18964221 - 18964185
Alignment:
Q  262 taattacattgaattatgtcattttctcaaaaaatta 298  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  18964221 taattacattgaattatgtgattttctaaaaaaatta 18964185  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 29198496 - 29198524
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  29198496 attacattgaattatgtcattttctcaaa 29198524  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 35238201 - 35238240
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  35238201 attatattgaattatgtcattttctcaaaatattatcggt 35238240  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 38134423 - 38134462
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  38134423 attacattgaattatgtcattttctcaaattattatcggt 38134462  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 1885648 - 1885586
Alignment:
Q  231 gtgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaa 293  Q
    ||||| ||||||| |||||||  || |||| | ||||||||||||||||||||||| ||||||    
T  1885648 gtgtccgacaccaacacgacaccgacacttgtgattacattgaattatgtcattttttcaaaa 1885586  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 2143870 - 2143899
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  2143870 attacattgaattatgtcattttctcaaaa 2143899  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 2144556 - 2144585
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  2144556 attacattgaattatgtcattttctcaaaa 2144585  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 5937438 - 5937467
Alignment:
Q  264 attacattgaattatgtcattttctcaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  5937438 attacattgaattatgtcattttctcaaaa 5937467  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 23165403 - 23165444
Alignment:
Q  262 taattacattgaattatgtcattttctcaaaaaattatcggt 303  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  23165403 taatcacattgaatcatgtcattttctcaaaatattatcggt 23165444  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 44172907 - 44172935
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  44172907 attacattgaattatgtcattttctcaaa 44172935  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 263356 - 263417
Alignment:
Q  231 gtgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaa 292  Q
    ||||||||||||  ||||||| ||| |||| |||||||| ||||||||||  ||||||||||    
T  263356 gtgtctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaa 263417  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 24399660 - 24399696
Alignment:
Q  264 attacattgaattatgtcattttctcaaaaaattatc 300  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  24399660 attacattgaattatgtcattgtctcaaaaatttatc 24399696  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 40017386 - 40017414
Alignment:
Q  264 attacattgaattatgtcattttctcaaa 292  Q
    |||||||||||||||||||||||||||||    
T  40017386 attacattgaattatgtcattttctcaaa 40017414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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