View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_2 (Length: 532)
Name: NF1261_low_2
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 177 - 523
Target Start/End: Complemental strand, 16784081 - 16783726
Alignment:
| Q |
177 |
aaatttctatctaatctcatgactaaattttgcaatcaaataatttatgagatatattatattttcaatcactaattttcgtccctaatttagtagtgag |
276 |
Q |
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| T |
16784081 |
aaatatctatctaattccattattaaattttgcaatcaaataatttgtgagatatattatattttcaatcactaattttcgttcctaatttagtagtgag |
16783982 |
T |
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| Q |
277 |
-agttatacttttaacggttcgcaagatgtcacatgtccaaatcttgttacaaaacactgtgtctacaaacaaaaatatattaaagcataaagaacaaga |
375 |
Q |
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| T |
16783981 |
gagttatacttttaacggtttgcaagatgtcacatgtccaaatcttgttacaaaacactgtgtctacaaacaaaaatatattaaagcataaagaataaga |
16783882 |
T |
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| Q |
376 |
agtaag-------aagttagtttagttctcgacaaaaagaaggga-aaaaagaatgtgattgattgacgtaaacaccatctttccccannnnnnnnctcc |
467 |
Q |
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| T |
16783881 |
agtaagaagtaagaagttagtttagttctcgacaaaaagaagagagaaaaagaacgtgattgattgacgtaaacaccatctttccccattttttttctcc |
16783782 |
T |
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| Q |
468 |
ctctcaactcccttatataataatttccaaagcactcttttctcttatattcatct |
523 |
Q |
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| T |
16783781 |
ctctcaactcccttatataataatttccaaagcactcttttctcttatattcatct |
16783726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 16784227 - 16784150
Alignment:
| Q |
30 |
tgtattgtatgtaactaacactaaaaaagaccattaaattgataaaaattgggaattttgaccacgaaactatttcaag |
108 |
Q |
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| T |
16784227 |
tgtattgtatgtaactaatactaaaaaa-accattaaattgataaaaattgggaattttgaccacgaaactatttcaag |
16784150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 36543798 - 36543867
Alignment:
| Q |
198 |
actaaattttgcaatcaaataatttatgagatatattatattttcaatcactaattttcgtccctaattt |
267 |
Q |
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| T |
36543798 |
actaaattttgcgaccaaagaatctgtgagagattttattttttccatcactaattttcctccctaattt |
36543867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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