View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_20 (Length: 310)
Name: NF1261_low_20
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 38108567 - 38108722
Alignment:
| Q |
9 |
gaataatatataaacaaaaacgaaagcagcatgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaatt |
108 |
Q |
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| T |
38108567 |
gaataatatataaacaaaaacgaaagcagcatgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaatt |
38108666 |
T |
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| Q |
109 |
aaatccattattgttgaaacattctgatgtaatctatctatgatctaataaaagat |
164 |
Q |
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| T |
38108667 |
aaatccattattgttgaaacattctgatgtaatctatctatgatctaataaaagat |
38108722 |
T |
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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 38108740 - 38108831
Alignment:
| Q |
190 |
gggatccaaagaactccaccattttaaagaagaagagaagcaactcaagctcaaaagcaacttaagctcatcgtagaaggaaactccaaatg |
281 |
Q |
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| T |
38108740 |
gggatccaaagaactccacctttttaaagaagaagagaagcaactgaagctcaaaagcaacttaagctcatcgtagaaagaaactccaaatg |
38108831 |
T |
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