View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_24 (Length: 282)
Name: NF1261_low_24
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 3855233 - 3854996
Alignment:
| Q |
11 |
caaaggagattatagagcaacttttttagaaaaag-ttacaagaaaatgttcaacttttgagaaattcatttttgaagaatatttcttttgttataactt |
109 |
Q |
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| T |
3855233 |
caaaggagattatagtgaaacttttttagaaaaagattacaagaaaatgttcaacttttgagaaattcattttggaagaatatttcttttgttataactt |
3855134 |
T |
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| Q |
110 |
ataagtattggaaaccctagaatttaatttctatatttaaatggagtatttggaaattttttgaag----nnnnnnnncaacttcataagttgacttctt |
205 |
Q |
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| T |
3855133 |
ataagtattggaaaccctagaatttaatttctatatttaaatggagtatttggaacatttttgaaggaaaaaaaaaaacaatttcataagttgacttctt |
3855034 |
T |
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| Q |
206 |
ttgaaaaataatttgagaattcaagatttttacctaag |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3855033 |
ttgaaaaataatttgagaattcaagatttttacctaag |
3854996 |
T |
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