View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_25 (Length: 279)
Name: NF1261_low_25
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34627481 - 34627260
Alignment:
| Q |
1 |
gcatgacctaaacaaataccaaaccctggttgtcgatattgtactcaccgcaagtataagaatgaagccaaaaattaggattggaataaaggaaacatat |
100 |
Q |
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| T |
34627481 |
gcatgacctaaacaaataccaaaccctggttgtcgatattgtactcaccacaagtacaagaatgaagccaaaaattaggattggaataaaggaaacatat |
34627382 |
T |
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| Q |
101 |
gaagatatattaaatcaaaatagtggtaatcattatatatgaagttgaaacaaagaacagataacttactaagtgcacaaaatctctcgctgcaattgca |
200 |
Q |
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| T |
34627381 |
gaagatatattaaatcaaaatagtggtaatcattatatatgaagttgaaacaaagaacaggtaacttactaagtgcacaaaatctcttgctgcaattgca |
34627282 |
T |
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| Q |
201 |
agaatatctgcacaggacacca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34627281 |
agaatatctgcacaggacacca |
34627260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43933701 - 43933755
Alignment:
| Q |
1 |
gcatgacctaaacaaataccaaaccctggttgtcgatattgtactcaccgcaagta |
56 |
Q |
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| T |
43933701 |
gcatgacctaaacagatac-aaaccctagttatcgatattgtactcactgcaagta |
43933755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47834486 - 47834534
Alignment:
| Q |
1 |
gcatgacctaaacaaataccaaaccctggttgtcgatattgtactcacc |
49 |
Q |
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| T |
47834486 |
gcatgacctaaacaaatattaaaccctagttttagatattgtactcacc |
47834534 |
T |
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