View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_28 (Length: 258)
Name: NF1261_low_28
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 31771172 - 31770953
Alignment:
| Q |
28 |
caaatatggatataaatcagtgtgagttcattcaacgcttactagatgtcacaaatttcgccgcttattctcttccagagaagttatcacctgaagataa |
127 |
Q |
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| T |
31771172 |
caaatatggatataaatcagtgtgagttcattcaacgcttactagatgtcacaaatttcgccgcttattctcttccagagaagttatcacctgaagataa |
31771073 |
T |
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| Q |
128 |
ctaccagattgtagaatacagtaacaacagtcattctgatgccaatggcagcaaaggtcattcttctaatgaaaaacaccatnnnnnnngtgatattctt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31771072 |
ctaccagattgtagaatacagtaacaacagtcattctgatgccaatggcagcaaaggtcattcttctaatgaaaaacaccataaaaaaagtgatattctt |
31770973 |
T |
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| Q |
228 |
tcatcatcaaggtagttcat |
247 |
Q |
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|||||||||||||||||||| |
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| T |
31770972 |
tcatcatcaaggtagttcat |
31770953 |
T |
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