View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_3 (Length: 520)
Name: NF1261_low_3
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 105 - 421
Target Start/End: Complemental strand, 47798957 - 47798637
Alignment:
| Q |
105 |
attattctcttgcaatgcatggttgtaatttaggaagnnnnnnnnngaattaagtttattttcttacata--atcttcatatat--gagtgactaccata |
200 |
Q |
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| T |
47798957 |
attattctctttcaatgcatggttgtaatttaggaagaaaaaaaaagaattaagtttatttttttacatagaatcttcatatatatgagtgactaccata |
47798858 |
T |
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| Q |
201 |
tacttttttatgtatgcattcacttcgtttgatttgtgtttgagccggataatgaaaaattctacgnnnnnnngagtggaagcatgtgcgcagccgtaga |
300 |
Q |
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| T |
47798857 |
tacttttttatgtatgcattcagttcgtttgatttatgtttgagccggataatgaaaaattctacgtttttttgagtggaagcatgtgcccagccgtaga |
47798758 |
T |
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| Q |
301 |
gaactgcagtgttgaagtgtaacgtagacatgacaatctttcaggagtaaagaaggtatggcatatggatgtgtttgagggatgacaaatgtgactttgt |
400 |
Q |
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| T |
47798757 |
gaactgtggtgttgaagtgtaacgtagacatgacaatctttcaggagcaaagaatgtatggtatatggatgtgtttgagggatgacaaatgtgactttgt |
47798658 |
T |
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| Q |
401 |
agcatcaagagacttggtata |
421 |
Q |
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| T |
47798657 |
agcatcaagagacttggtata |
47798637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 18338408 - 18338525
Alignment:
| Q |
151 |
gaattaagtttattttcttacata--atcttcatatatgagtgactaccatatac---ttttttatgtatgcattcacttcgtttgatttgtgtttgagc |
245 |
Q |
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| T |
18338408 |
gaatcaagtttattttcttacatagaatcttcatatatgagtgactaccatataaatattttctatgtatgcattcagttcgtttgattcgtgcttgagc |
18338507 |
T |
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| Q |
246 |
cggataatgaaaaattct |
263 |
Q |
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| T |
18338508 |
cggatgatgaaaaattct |
18338525 |
T |
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