View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261_low_39 (Length: 207)

Name: NF1261_low_39
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261_low_39
NF1261_low_39
[»] chr4 (12 HSPs)
chr4 (108-190)||(6625548-6625630)
chr4 (109-190)||(6591918-6591999)
chr4 (109-190)||(6536756-6536837)
chr4 (109-190)||(6793681-6793762)
chr4 (108-190)||(6648385-6648467)
chr4 (109-190)||(6813055-6813133)
chr4 (112-190)||(6833632-6833710)
chr4 (111-190)||(6770756-6770835)
chr4 (108-186)||(6750189-6750267)
chr4 (109-186)||(6549081-6549158)
chr4 (109-190)||(6712978-6713059)
chr4 (109-183)||(6501043-6501117)
[»] scaffold0373 (1 HSPs)
scaffold0373 (109-190)||(12542-12623)
[»] scaffold0552 (1 HSPs)
scaffold0552 (109-190)||(527-605)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 6625548 - 6625630
Alignment:
Q  108 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6625548 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagtgctcttttccaattactctttgtggat 6625630  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 6591918 - 6591999
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||    
T  6591918 aaataacctggaatctatgaggacaaaccctgctattccaccaatatcaaagagttctcttttccaattactctttgtggat 6591999  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 6536756 - 6536837
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||| | ||| |||||| ||||||||||||||||||||    
T  6536756 aaataacctggaatctttgagtacaaaccctgctatgccaccaatatcaatgaggtctcttctccaattactctttgtggat 6536837  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 6793762 - 6793681
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||| |||||||||||| |||||||||||    
T  6793762 aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggat 6793681  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 6648467 - 6648385
Alignment:
Q  108 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    ||||| ||||||||||| |||||||||| ||||||||||  |||||||| | ||| |||||||||||||||||||||||||||    
T  6648467 aaaatgacctggaatctttgagtacaaagcctgctatgccgccaatatcaatgaggtctcttttccaattactctttgtggat 6648385  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 6813133 - 6813055
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||||| ||   |||||||||||||||||||||||||||||    
T  6813133 aaataaactggaatctaggagtacaaaccctgctatgccaccaatattga---gttctcttttccaattactctttgtggat 6813055  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 6833710 - 6833632
Alignment:
Q  112 taacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||||||| ||| ||||||||| || ||||||| ||||||||| ||||| |||||| |||||||||||||| |||||    
T  6833710 taacctggaacctaagagtacaaacccagctatgccaccaatatcaaagagatctcttctccaattactctttttggat 6833632  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 6770835 - 6770756
Alignment:
Q  111 ataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||||||||||||||||   |||||||| ||||| || ||||||||||| ||| ||| |||| |||||||||||||||    
T  6770835 ataacctggaatctatgagggtaaaacctgatatgccacaaatatcgaagatttcccttctccagttactctttgtggat 6770756  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 6750267 - 6750189
Alignment:
Q  108 aaaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgt 186  Q
    |||| ||||||||||||||||| ||||| || ||| ||| ||||||||| | ||| |||||| ||||||||||||||||    
T  6750267 aaaaaaacctggaatctatgaggacaaacccagctgtgccaccaatatcaatgaggtctcttctccaattactctttgt 6750189  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 6549081 - 6549158
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgt 186  Q
    ||||||||| |||| |||||| ||||| |||| ||||| || |||||| ||||| |||||| ||||||||||||||||    
T  6549081 aaataaccttgaatttatgaggacaaaccctgatatgccacaaatatcaaagagctctcttctccaattactctttgt 6549158  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 6713059 - 6712978
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||||||||||||| ||| || ||| ||  || ||| ||||||||| | ||| |||||| ||||||||||||||||||||    
T  6713059 aaataacctggaatctgtgactataaacccatctttgccaccaatatcaatgaggtctcttctccaattactctttgtggat 6712978  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 6501043 - 6501117
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctt 183  Q
    ||||||||||||||| ||||||||||  ||||||||||  ||||||||   ||| |||||| |||||| ||||||    
T  6501043 aaataacctggaatcaatgagtacaatgcctgctatgcccccaatatcactgaggtctcttctccaatcactctt 6501117  T

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Target: scaffold0373 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 12542 - 12623
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||| |||||||||||| |||||| ||||    
T  12542 aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttggggat 12623  T

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Target: scaffold0552 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 605 - 527
Alignment:
Q  109 aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagttctcttttccaattactctttgtggat 190  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||||| ||   |||||||||||||||||||||||||||||    
T  605 aaataaactggaatctaggagtacaaaccctgctatgccaccaatattga---gttctcttttccaattactctttgtggat 527  T

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