View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_4 (Length: 499)
Name: NF1261_low_4
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_4 |
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| [»] scaffold0813 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 6625263 - 6624775
Alignment:
| Q |
1 |
acttttctaatattcttgatgtgacaagttatttgtggaagcaatgactcgttaatttcaaccttctactcttttattcttcactgttccttcgtgtaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6625263 |
acttttctaatattcttgatgtgacaagttatttgtggaagcaatgactcgttaatttcaaccttctactcttttattcttcactgttccttcgtgtaag |
6625164 |
T |
|
| Q |
101 |
gatttgcagaccaaatgcgatgatgttgataggtattcttgaggtgggattttaactgaatcactcatgaaactaaacgatatggtgggttaacacaaca |
200 |
Q |
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| T |
6625163 |
gatttgcagaccaaatgcgatgatgttgataggtactctagaggtgggattttaactgaatcactcatgaaaataaacgatatggtgggttaacacaaca |
6625064 |
T |
|
| Q |
201 |
acaaatttgtacagaataaaagtatttgaggcttaatattattcctcttttacttcacaactagttatatcagaacatgcacgcaagtttgtatacttac |
300 |
Q |
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| T |
6625063 |
acaaatttgttcagaataaaagtatttgaggcttaatattattcctcttttacttcacaactagttatatcagaacatgcacccaagtttttatacttac |
6624964 |
T |
|
| Q |
301 |
cagttacgagtaactcttaaattactcgagtaatagtttctaataaataccaatagattaccatttcactaaagcgtgtcttttattacatttccattgc |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
6624963 |
cagttacgagtgactcttaaattactcgagtaatagtttctaataaatgccaatagattaccagttcactaaagcgtgtcttttattacattcccattgc |
6624864 |
T |
|
| Q |
401 |
aatgcannnnnnnncttttaaaaatgtgcaatgtatatgggcacacaattctcccttttctattgattgatgcatatattcgagaataat |
490 |
Q |
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| T |
6624863 |
aatgca-tttttttcttttaaaaatgtgcaatgtatatgggcacacaattctcccttttctattgattgatgcatatattcgagaataat |
6624775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 6717085 - 6717298
Alignment:
| Q |
1 |
acttttctaatattcttgatgtgacaagttatttgtggaagcaatgactcgttaatttcaaccttctactcttttattcttcactgttccttcgtgtaag |
100 |
Q |
| |
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|||||||||| ||| |||||||| | ||||||||||||||||||||||| || ||| | |||||||| ||||||| || || |||||| || |||| |
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| T |
6717085 |
acttttctaaaattgttgatgtgtccagttatttgtggaagcaatgacttgtggccttccaacttctacttttttattttttgcttttccttagtttaag |
6717184 |
T |
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| Q |
101 |
gatttgcagaccaaatgcgatgatgttgataggtattcttgaggtgggattttaactgaatcactcatgaaactaaacgatatggtgggttaacacaaca |
200 |
Q |
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| T |
6717185 |
g-tttacagactaaatgccataatgttggtag-tattctagaggtggaattttaattgaatcactcattaaactaaaggatatggtgggttaacacaaca |
6717282 |
T |
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| Q |
201 |
acaaatttgtacagaa |
216 |
Q |
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| T |
6717283 |
acaaaattgtgcagaa |
6717298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 6717574 - 6717512
Alignment:
| Q |
221 |
agtatttgaggcttaatattattcctcttttacttcacaactagttatatcagaacatgcacg |
283 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
6717574 |
agtattcgaggcttaatagtattcatcttttacttcacaactaattatatcagaacatacacg |
6717512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 6672128 - 6672180
Alignment:
| Q |
229 |
aggcttaatattattcctcttttacttcacaactagttatatcagaacatgca |
281 |
Q |
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| T |
6672128 |
aggcttaatgttattcctctattatttcacaactacctatatcagaacatgca |
6672180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 1591 - 1378
Alignment:
| Q |
1 |
acttttctaatattcttgatgtgacaagttatttgtggaagcaatgactcgttaatttcaaccttctactcttttattcttcactgttccttcgtgtaag |
100 |
Q |
| |
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|||||||||| ||| |||||||| | ||||||||||||||||||||||| || ||| | |||||||| ||||||| || || |||||| || |||| |
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| T |
1591 |
acttttctaaaattgttgatgtgtccagttatttgtggaagcaatgacttgtggccttccaacttctacttttttattttttgcttttccttagtttaag |
1492 |
T |
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| Q |
101 |
gatttgcagaccaaatgcgatgatgttgataggtattcttgaggtgggattttaactgaatcactcatgaaactaaacgatatggtgggttaacacaaca |
200 |
Q |
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| ||| ||||| |||||| || |||||| ||| |||||| ||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
1491 |
g-tttacagactaaatgccataatgttggtag-tattctagaggtggaattttaattgaatcactcattaaactaaaggatatggtgggttaacacaaca |
1394 |
T |
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| Q |
201 |
acaaatttgtacagaa |
216 |
Q |
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||||| |||| ||||| |
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| T |
1393 |
acaaaattgtgcagaa |
1378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 1102 - 1164
Alignment:
| Q |
221 |
agtatttgaggcttaatattattcctcttttacttcacaactagttatatcagaacatgcacg |
283 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
1102 |
agtattcgaggcttaatagtattcatcttttacttcacaactaattatatcagaacatacacg |
1164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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