View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261_low_6 (Length: 444)

Name: NF1261_low_6
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261_low_6
NF1261_low_6
[»] chr1 (9 HSPs)
chr1 (28-431)||(15828442-15828834)
chr1 (30-136)||(15800486-15800592)
chr1 (28-136)||(15830068-15830176)
chr1 (28-136)||(15831796-15831904)
chr1 (28-136)||(15833523-15833631)
chr1 (136-177)||(15800638-15800679)
chr1 (266-314)||(15830305-15830353)
chr1 (266-314)||(15832033-15832081)
chr1 (266-314)||(15833760-15833808)
[»] scaffold0754 (2 HSPs)
scaffold0754 (28-136)||(3747-3855)
scaffold0754 (266-314)||(3569-3617)
[»] scaffold0563 (12 HSPs)
scaffold0563 (28-136)||(10279-10387)
scaffold0563 (31-136)||(1646-1751)
scaffold0563 (31-136)||(3415-3520)
scaffold0563 (28-136)||(597-705)
scaffold0563 (28-136)||(5240-5348)
scaffold0563 (28-136)||(7414-7522)
scaffold0563 (266-314)||(420-468)
scaffold0563 (266-314)||(1880-1928)
scaffold0563 (266-314)||(3649-3697)
scaffold0563 (266-314)||(7237-7285)
scaffold0563 (266-314)||(8999-9047)
scaffold0563 (266-314)||(10102-10150)
[»] scaffold0543 (2 HSPs)
scaffold0543 (28-136)||(96-204)
scaffold0543 (266-314)||(334-382)
[»] scaffold0492 (3 HSPs)
scaffold0492 (28-136)||(639-747)
scaffold0492 (28-136)||(1641-1750)
scaffold0492 (266-314)||(462-510)
[»] chr5 (7 HSPs)
chr5 (215-314)||(37328448-37328546)
chr5 (212-307)||(37224735-37224826)
chr5 (30-136)||(37328232-37328338)
chr5 (30-136)||(22654160-22654266)
chr5 (28-68)||(37225030-37225070)
chr5 (30-62)||(38848947-38848979)
chr5 (96-136)||(38867964-38868004)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 28 - 431
Target Start/End: Original strand, 15828442 - 15828834
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15828442 cacaactctcaacttggagcgggcagaccagcatattgaagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 15828541  T
Q  128 gtcacaagtatagacttggtttggttataatatatccgatgtgggacataatactttgacaagtgaagtaactgatccaaaatttgctgctagccaacat 227  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15828542 gtcacaagtatagacttgttttggttataatatatccgatgtgcgacataatactttgacaagtgaagtaactgatccaaaatttgctgctagccaacat 15828641  T
Q  228 tgttctagaccattaatgttatttggttccacacttactttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatctaataataaggtt 327  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||||||||||||    
T  15828642 tgttctagaccattaatgttatttggttccacactttctttgtaattaaaaacaaatcatgtatgcaaatttcaata-----------aataataaggtt 15828730  T
Q  328 tacaaccattgcagaatacaactatattatgtttcacatttgagtttcatttcaatttgagccatactccatgtatatgtttgaatcgtgttctaaacat 427  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||    
T  15828731 tacaaccatttcagaatacaactatattatgtttcacatttgagtttcatttcaatttaagccatacttcatgtatatgtttgaattgtgttttaaacat 15828830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 15800486 - 15800592
Alignment:
Q  30 caactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgggt 129  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||    
T  15800486 caactctcaacttggagcgggcaggccagcatattgcagccaacagaccagcccaacaagccgtagccatgttccatcactctaatgctcccactcgggt 15800585  T
Q  130 cacaagt 136  Q
    |||||||    
T  15800586 cacaagt 15800592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 15830068 - 15830176
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  15830068 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 15830167  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  15830168 gtcacaagt 15830176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 15831796 - 15831904
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  ||||||| |||||    
T  15831796 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccccttgg 15831895  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  15831896 gtcacaagt 15831904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 15833523 - 15833631
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  ||||||| |||||    
T  15833523 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccccttgg 15833622  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  15833623 gtcacaagt 15833631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 15800638 - 15800679
Alignment:
Q  136 tatagacttggtttggttataatatatccgatgtgggacata 177  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  15800638 tatagacttgattttgttataatatatccgatgtgggacata 15800679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 15830305 - 15830353
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  15830305 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 15830353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 15832033 - 15832081
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  15832033 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 15832081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 15833760 - 15833808
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  15833760 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 15833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 3855 - 3747
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  3855 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 3756  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  3755 gtcacaagt 3747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 3617 - 3569
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  3617 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 3569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 10387 - 10279
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  10387 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 10288  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  10287 gtcacaagt 10279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 1646 - 1751
Alignment:
Q  31 aactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgggtc 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  ||||||||||||||||    
T  1646 aactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagcggtagccacgttccatcactttggtgctcccacttgggtc 1745  T
Q  131 acaagt 136  Q
    ||||||    
T  1746 acaagt 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 3415 - 3520
Alignment:
Q  31 aactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgggtc 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  ||||||||||||||||    
T  3415 aactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagcggtagccacgttccatcactttggtgctcccacttgggtc 3514  T
Q  131 acaagt 136  Q
    ||||||    
T  3515 acaagt 3520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 705 - 597
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  ||||||| |||||    
T  705 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccccttgg 606  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  605 gtcacaagt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 5240 - 5348
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  5240 cacaactctcaacttggagcgggcaggccaacatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 5339  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  5340 gtcacaagt 5348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 7522 - 7414
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  7522 cacaactctcaacttggagcgggcaggccaacatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 7423  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  7422 gtcacaagt 7414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 468 - 420
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  468 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 1880 - 1928
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  1880 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 1928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 3649 - 3697
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  3649 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 7285 - 7237
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  7285 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 7237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 9047 - 8999
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  9047 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 10150 - 10102
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  10150 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 10102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 96 - 204
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  96 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 195  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  196 gtcacaagt 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 334 - 382
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  334 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 747 - 639
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  |||||||||||||    
T  747 cacaactctcaacttggagcgggcaggccagcatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttgg 648  T
Q  128 gtcacaagt 136  Q
    |||||||||    
T  647 gtcacaagt 639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 1641 - 1750
Alignment:
Q  28 cacaactctcaacttgg-agcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttg 126  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||  ||||||||||||    
T  1641 cacaactctcaacttgggagcgggcaggccaacatattgcagctaacagaccagccaaacaagccgtagccacgttccatcactttggtgctcccacttg 1740  T
Q  127 ggtcacaagt 136  Q
    ||||||||||    
T  1741 ggtcacaagt 1750  T

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Target: scaffold0492; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 510 - 462
Alignment:
Q  266 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  510 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 462  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 37328448 - 37328546
Alignment:
Q  215 tgctagccaacattgttctagaccattaatgttatttggttccacacttactttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 314  Q
    ||||||| ||| ||| | ||||||| | |||  ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  37328448 tgctagctaaccttggtatagaccaatcatgcaatttggttccaaactttctttgtaattaaaaa-aaatcatgtatgcaaatttcaacaaaccattatc 37328546  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 37224826 - 37224735
Alignment:
Q  212 tgctgctagccaacattgttctagaccattaatgttatttggttccacacttactttgtaattaaaaacaaatcatgtatgcaaatttcaataaac 307  Q
    |||| ||||| ||||||| | |||| || | |||||||||||||||||||||    |||||||||||||||||||||| | ||||  |||||||||    
T  37224826 tgctcctagctaacattggtatagatcagtcatgttatttggttccacactt----tgtaattaaaaacaaatcatgtttccaaacatcaataaac 37224735  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 37328232 - 37328338
Alignment:
Q  30 caactctcaacttggagcgggcagaccagcatattgcagctaactgaccagcccaacaagctgtagccatgttccatcacattaatgctcccacttgggt 129  Q
    ||||||||||||||||| |||||  ||| ||||||||||  | | | ||||||||||||||  ||||||||| |||  || ||| ||||||||| |||||    
T  37328232 caactctcaacttggagagggcaagccaacatattgcagaaaccagcccagcccaacaagccatagccatgtcccaatactttagtgctcccacatgggt 37328331  T
Q  130 cacaagt 136  Q
     ||||||    
T  37328332 gacaagt 37328338  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 22654266 - 22654160
Alignment:
Q  30 caactctcaacttggagcgggcagaccagcatattgcagctaactgacc-agcccaacaagctgtagccatgttccatcacattaatgctcccacttggg 128  Q
    ||||||||||||||||||||||| |||| ||||||||||  |||  ||| ||| ||||||||  ||| ||||| | || || ||| ||||||||||||||    
T  22654266 caactctcaacttggagcgggcaaaccaacatattgcag-aaaccaacctagctcaacaagccatagtcatgtcctataaccttagtgctcccacttggg 22654168  T
Q  129 tcacaagt 136  Q
    | ||||||    
T  22654167 tgacaagt 22654160  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 37225070 - 37225030
Alignment:
Q  28 cacaactctcaacttggagcgggcagaccagcatattgcag 68  Q
    |||||||||||||||||||||| ||  ||||||||||||||    
T  37225070 cacaactctcaacttggagcggacaagccagcatattgcag 37225030  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 38848947 - 38848979
Alignment:
Q  30 caactctcaacttggagcgggcagaccagcata 62  Q
    |||||||||||||||||||||||| ||||||||    
T  38848947 caactctcaacttggagcgggcaggccagcata 38848979  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 38867964 - 38868004
Alignment:
Q  96 ccatgttccatcacattaatgctcccacttgggtcacaagt 136  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  38867964 ccatgttccatcaccttaatgctcccacatgggttacaagt 38868004  T

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