View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_7 (Length: 437)
Name: NF1261_low_7
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 38 - 408
Target Start/End: Complemental strand, 7471179 - 7470809
Alignment:
| Q |
38 |
ggcaatgcaaccaagaaaataggaaaataaatgcttcatcttactcttttgttttggtttcttttcaaccaagtcatggaatggtgtttgtgttccactc |
137 |
Q |
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| T |
7471179 |
ggcaatgcaaccaagaaaataggaaaataaatgcttcatcttactcttttgttttggtttcttttcaaccaagtcatggaatggtgtttgtgttccactc |
7471080 |
T |
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| Q |
138 |
tgagattcagcttgagatccagattgatctcgactttcatccaatgtgagactgttaacagcttctgctcctccatcgggtcctagagtctcattctcaa |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471079 |
tgagattcagcttgagatccagattgatctcgactttcatccaatatgagactgttaacagcttctgctcctccatcgggtcctagagtctcattctcaa |
7470980 |
T |
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| Q |
238 |
caggggacactaagctagctgtcgtatgttgcacatttgaactttcttcttcaatttcgaaatcaacgcgatcagtacagattggttttatgcttgcaag |
337 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7470979 |
cagtggacactaagctagctgtagtatgttgcacatttgaactttcttcttcaatttcgaaatcaacgcgatcagtacagattggttttatgcttgcaag |
7470880 |
T |
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| Q |
338 |
tgcattaatcttggctgtgtaaagatcaaagagaatccttatcagtatttcagtgatttccttgaattctg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7470879 |
tgcattaatcttggctgtgtaaagatcaaagagaatgcttatcagtatttcagtgatttccttgaattctg |
7470809 |
T |
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