View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261_low_8 (Length: 428)
Name: NF1261_low_8
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 29 - 422
Target Start/End: Complemental strand, 36547906 - 36547513
Alignment:
| Q |
29 |
aagtaaaacaaataaccagaagagttcaagctaaattttttagctattattgagcaattgaatagtgagaacatgtataccaccgagcaaatatccgcac |
128 |
Q |
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| T |
36547906 |
aagtaaaacaaataaccagaagagttcaagctaaattttttagctattattgagcaattgaatagtgagaacatgtataccaccgagcaaatatccgcac |
36547807 |
T |
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| Q |
129 |
aaaatactccctacaaatattaaaggacaagaattgctctttttcttaccatacaaatgagaagcaagactaccgttgctcatataaatgtaaagaagca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36547806 |
aaaatactccctacaaatattaaaggacaagaattgctctttttcttaccatacaaatgagaagcaagactaccgttgatcatataaatgtaaagaagca |
36547707 |
T |
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| Q |
229 |
tgtgtcgtcctctttctgctgcatatcccaccaaacccacaagattcttatgatgtaatcttccaagtaataggacctgctaacaggaaagtttgagaga |
328 |
Q |
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| T |
36547706 |
tgtgtcgtcctctttctgctgcatatcccaccaaacccacaagattcttatgatgtaatcttccaagtaataggacctgctaacaggaaagtttgagaga |
36547607 |
T |
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| Q |
329 |
atataaattgttttggtttccaatttcatcagactatctttaagtcccttcacnnnnnnngttgtaaagaacagttggagatcatattgttgga |
422 |
Q |
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| T |
36547606 |
atataaattgttttggtttccaatttcatcagactatctttaagtcccttcacaaaaaaagttgtagagaactgttggagatcatattgttgga |
36547513 |
T |
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