View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262-Insertion-2 (Length: 803)
Name: NF1262-Insertion-2
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 803
Target Start/End: Original strand, 6932926 - 6933734
Alignment:
| Q |
8 |
atatgtcgagccgctatttgcctaccaaaggtccttggattgtcgatcgaatgggaagtcgtgcttatgtttcgcagttttcagatgatggttctctttt |
107 |
Q |
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| T |
6932926 |
atatgtcgagccgctatttgcctaccaaaggtccttggattgtcgatcggatgggaagtcgtgcttatgtttcgcagttttcagatgatggttctctttt |
6933025 |
T |
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| Q |
108 |
cattgctggatttcaggttatctctaccaccattctgattgtagttacttatgtataattatgtctgaagtgaagctgaaatatgaagcactgacataga |
207 |
Q |
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| T |
6933026 |
tatagctggatttcaggttatttccgccaccattctgatcgtaattatttatgtataattatgtctgaattgaagctgaaacatgaaccaccgacatata |
6933125 |
T |
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| Q |
208 |
cacttggcacaacactgacacgtcgacactgatagtattttgaaaaatggaagaaattggaagtaactacatgtgttggtgttgtgttggaca------- |
300 |
Q |
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| T |
6933126 |
cactggtcacaacactgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaactatatgtgttggtattgtgttggacaccagaca |
6933225 |
T |
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| Q |
301 |
--------tcggaagtgtcggtgtttcatatgaagatgattttgttaaaagaaacagtcttgtatttctgaaactataattatgggacaaaagggtcttt |
392 |
Q |
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| T |
6933226 |
caccttaatcggaagtgtcggtgttgcatatgaagatgattttgttaaaagaaacagtcttgtatttctgaaactataattatgggacgaaagggtcttt |
6933325 |
T |
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| Q |
393 |
aaatccttacttgtggttttttcttttgacaaaaaatccttacttgtggttgtttgtgctttgttatgaaacagggaagccacatcagaatctatgatgt |
492 |
Q |
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| T |
6933326 |
aaatccttgcttgtggttttttcttttgacaaaaaatccttacttgtggttgtttgtgctttgttatgaaacagggaagccacatcagaatctatgatgt |
6933425 |
T |
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| Q |
493 |
tgacaaggactggaaagttaagaaagacatctctgctagaaacttacggtggacgattactgatacatctctctcacctgatcgacaatatcttgtaagt |
592 |
Q |
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| T |
6933426 |
tgacaaggactggaaagttaagaaagacatctctgctagaaacttacggtggacaattactgatacatctctctcacctgatcgacaatatcttgtaagt |
6933525 |
T |
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| Q |
593 |
tcaacttgttttccatatgaggtggcattttccggctttctaggatggtggatttccttctataaacagccaattctgaccatggcttgtgaattcatct |
692 |
Q |
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| T |
6933526 |
tcaacttattttccatatgaggtggcatttgccggctttctaggatggcggatttcctgctataaacagccaattctgaccatggcttgtgaattcatct |
6933625 |
T |
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| Q |
693 |
aagttcgcgctatcacttaccagtttgtctcttttaacttcttgaattttgacaaattgttaattcatcattgcaggtttatgctaacatgtcaccaatt |
792 |
Q |
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| T |
6933626 |
aagtttgcgcttatatttaccagtttgtctcttttaac--attgcattttgacaaattggtaattcatcattgcaggtttatgctagcatgtcaccaatt |
6933723 |
T |
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| Q |
793 |
atccatattgt |
803 |
Q |
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| T |
6933724 |
atccatattgt |
6933734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 37603902 - 37603963
Alignment:
| Q |
219 |
acactgacacgtcgacactgatagtattttgaaaaatggaagaaattggaagtaactacatg |
280 |
Q |
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| T |
37603902 |
acactaacacgtcgacaccgataacaatttgaaaaatggaagaaattgaatgtaaatacatg |
37603963 |
T |
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