View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262-Insertion-3 (Length: 166)

Name: NF1262-Insertion-3
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262-Insertion-3
NF1262-Insertion-3
[»] chr6 (7 HSPs)
chr6 (6-166)||(7200104-7200264)
chr6 (14-134)||(8374837-8374957)
chr6 (14-134)||(34304945-34305065)
chr6 (45-134)||(26225242-26225331)
chr6 (14-67)||(29337625-29337678)
chr6 (45-148)||(45239-45342)
chr6 (45-160)||(4206166-4206281)
[»] chr7 (3 HSPs)
chr7 (14-163)||(5827673-5827822)
chr7 (16-159)||(24528013-24528156)
chr7 (14-71)||(47679632-47679689)
[»] chr8 (5 HSPs)
chr8 (14-163)||(39435086-39435235)
chr8 (14-163)||(24125447-24125595)
chr8 (14-141)||(42921669-42921796)
chr8 (14-147)||(37517524-37517657)
chr8 (14-71)||(4006979-4007036)
[»] chr2 (9 HSPs)
chr2 (6-166)||(28225416-28225575)
chr2 (14-160)||(17345060-17345206)
chr2 (14-163)||(4412605-4412754)
chr2 (14-163)||(9684954-9685103)
chr2 (14-163)||(20142279-20142428)
chr2 (14-163)||(41867447-41867596)
chr2 (14-72)||(44686927-44686985)
chr2 (16-71)||(19161367-19161422)
chr2 (16-72)||(18744559-18744615)
[»] chr1 (6 HSPs)
chr1 (6-150)||(28040658-28040802)
chr1 (14-163)||(7794454-7794603)
chr1 (14-116)||(19035893-19035995)
chr1 (31-163)||(34644985-34645117)
chr1 (14-119)||(37917633-37917738)
chr1 (14-82)||(15585360-15585428)
[»] chr5 (4 HSPs)
chr5 (17-163)||(25662859-25663005)
chr5 (14-163)||(27337112-27337261)
chr5 (14-163)||(433711-433860)
chr5 (14-163)||(15291562-15291711)
[»] scaffold0186 (1 HSPs)
scaffold0186 (15-71)||(20232-20288)
[»] chr4 (5 HSPs)
chr4 (14-160)||(53170920-53171066)
chr4 (14-90)||(25706994-25707071)
chr4 (16-104)||(32335330-32335417)
chr4 (22-69)||(48505745-48505792)
chr4 (14-94)||(24222379-24222459)
[»] chr3 (4 HSPs)
chr3 (14-134)||(29862245-29862366)
chr3 (14-116)||(49018418-49018520)
chr3 (14-72)||(53786218-53786276)
chr3 (15-72)||(52411442-52411499)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 2e-81; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 7200104 - 7200264
Alignment:
Q  6 caagaagaacatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7200104 caagaagaacatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgct 7200203  T
Q  106 taatgattccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtctaga 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  7200204 taatgattccattactttttattgatgagatgtgccctgtttgccataaggcgtgtctaga 7200264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 8374837 - 8374957
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||||  |||||||||||||||||   ||||||||||||   |||||||||||||   ||||||| |  ||||| ||   ||||||| | ||||||    
T  8374837 acatgctcaatattttcttctagctatccttattgatgggttaagccaacatatgtcaccaatagagtatcgtactatcctcatatatcgcattatgatt 8374936  T
Q  114 ccattactttttattgatgag 134  Q
    |||||||||| ||||||||||    
T  8374937 ccattactttctattgatgag 8374957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 34305065 - 34304945
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| |||||| |||||| |||| ||||||||||||||  ||| ||||||||||  || |||||||  ||||| ||||||||  |  | ||||||    
T  34305065 acatgctcaagattttattctaggtatcccaattgatgggttatgtcagcatatgtcaccagtggagtaccgtactatccttcgatactgtcttatgatt 34304966  T
Q  114 ccattactttttattgatgag 134  Q
    |||||| ||  ||||||||||    
T  34304965 ccattatttcatattgatgag 34304945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 26225242 - 26225331
Alignment:
Q  45 attgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgattccattactttttattgatgag 134  Q
    ||||||| ||||| ||||||||||||||| ||||||||||  ||||| ||| |||||| |   |||||||||||| || ||||| |||||    
T  26225242 attgatgagttaggtcaacatatgtcacaagtagagtaccgtactatccttagatatcaccccatgattccattatttcttattaatgag 26225331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 29337625 - 29337678
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatat 67  Q
    ||||||||||||||||||||||||||||   ||||||||||||| ||| |||||    
T  29337625 acatgctcaggattttcttctagctatcctgattgatgggttaggtcagcatat 29337678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 45239 - 45342
Alignment:
Q  45 attgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgattccattactttttattgatgagatgcgccctg 144  Q
    ||||||||||||| ||| |||||||||   || ||||| || ||||| ||| |||||| | | ||||||||| || ||  |||||||||| || ||||||    
T  45239 attgatgggttaggtcagcatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctg 45338  T
Q  145 tttg 148  Q
    ||||    
T  45339 tttg 45342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 4206166 - 4206281
Alignment:
Q  45 attgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgattccattactttttattgatgagatgcgccctg 144  Q
    ||||||||||||| ||| ||||||||||  || |||||||  ||||| ||| ||| |||| | | ||||||| || ||  ||||||||||  | ||||||    
T  4206166 attgatgggttaggtcagcatatgtcaccagtggagtaccgtactatccttagatctcgccttacgattccactatttcctattgatgaggcgtgccctg 4206265  T
Q  145 tttgccttaaggcgtg 160  Q
    |||| | |||||||||    
T  4206266 tttgtcgtaaggcgtg 4206281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 5827822 - 5827673
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||||  ||||||||||||||||| ||||||||||||||| ||| ||||||||||  || |||||||  ||||| |||||||||||  | ||||||    
T  5827822 acatgctcaaaattttcttctagctatcccaattgatgggttaggtcagcatatgtcaccagtggagtaccgtactatccttcgatatcgtcttatgatt 5827723  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || || ||||||||||| || |||||||||| | ||||||||||||    
T  5827722 ccactatttcttattgatgaggtgtgccctgtttgtcgtaaggcgtgtct 5827673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 24528156 - 24528013
Alignment:
Q  16 atgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgattcc 115  Q
    ||||||||||||||||||||||||||   |||||||||||||  |||||||||||||  || ||||| || |||||  || |||||||| | ||||||||    
T  24528156 atgctcaggattttcttctagctatcatgattgatgggttaggacaacatatgtcaccagtggagtatcatactatcattagatatcgccttatgattcc 24528057  T
Q  116 attactttttattgatgagatgcgccctgtttgccttaaggcgt 159  Q
    | || || |||||| ||||  | |||||||||| | ||||||||    
T  24528056 actatttcttattgttgaggggtgccctgtttgtcgtaaggcgt 24528013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 47679689 - 47679632
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtca 71  Q
    ||||||||||||||||||||||||||||   ||||||| ||||  |||||||||||||    
T  47679689 acatgctcaggattttcttctagctatcctgattgatgagttatgtcaacatatgtca 47679632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 4e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 39435235 - 39435086
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||  || |||||||  ||||| |||||||||||  | ||||||    
T  39435235 acatgctcaagattttcttctagctatcccaattgatgggttaggtcagcatatgtcactagttgagtaccgtactatccttcgatatcgtcttatgatt 39435136  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| |  ||  |||||||||| || |||||||||| | ||||||||||||    
T  39435135 ccactttttcctattgatgaggtgtgccctgtttgtcgtaaggcgtgtct 39435086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 24125595 - 24125447
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||||||||||||||||||||||| | ||||||||||||| |||  |||||||||| || |||||||  ||||| |||  ||||||| | ||||||    
T  24125595 acatgctcaggattttcttctagctatcccgattgatgggttaggtcaggatatgtcaca-gtggagtaccgtactatccttaaatatcgcattatgatt 24125497  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || ||  |||||||||| || |||||||||| | ||||||||||||    
T  24125496 ccactatttcctattgatgaggtgtgccctgtttgtcgtaaggcgtgtct 24125447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 42921669 - 42921796
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||| |||||||||||||||||||||| | || |||||||| ||| ||||| ||| | || ||||| || |||||| ||||||||||  | ||||||    
T  42921669 acatgcttaggattttcttctagctatctcgaatggtgggttaggtcagcatatatcataagtggagtatcatactattattcgatatcgtcttatgatt 42921768  T
Q  114 ccattactttttattgatgagatgcgcc 141  Q
    |||||| || ||||||||||| ||||||    
T  42921769 ccattatttcttattgatgaggtgcgcc 42921796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 37517657 - 37517524
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| ||||||||||||  |||| | ||||||||||||| ||||||||||||||  || ||||| || | ||| ||| |||||||| | ||||||    
T  37517657 acatgctcatgattttcttctaagtatcccgattgatgggttaggtcaacatatgtcaccagtggagtatcataatatccttagatatcgccttatgatt 37517558  T
Q  114 ccattactttttattgatgagatgcgccctgttt 147  Q
    ||| || ||  |||||||||| || |||||||||    
T  37517557 ccactatttcctattgatgaggtgtgccctgttt 37517524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 4006979 - 4007036
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtca 71  Q
    ||||||||| ||||||||||||||||||   ||||||||||||  ||| |||||||||    
T  4006979 acatgctcatgattttcttctagctatcctgattgatgggttaagtcagcatatgtca 4007036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 4e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 28225575 - 28225416
Alignment:
Q  6 caagaagaacatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgct 105  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||  |  |||||||  ||||| | ||||||||       
T  28225575 caagaagcacatgctcaagattttcttctagctatc-caattgatgggttagatcagcatatgtcaccagcggagtaccgtactatccgtcgatatcatc 28225477  T
Q  106 taatgattccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtctaga 166  Q
    | |||||||||||| |||  ||||||||| || ||| |||||| | |||| ||||||||||    
T  28225476 ttatgattccattattttccattgatgaggtgtgccatgtttgtcgtaagacgtgtctaga 28225416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 17345206 - 17345060
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| ||  ||||||||||  || ||||| |  ||||| ||| |||||||| | |||| |    
T  17345206 acatgctcaagattttcttctagctatcccaattgatgggttaggtcggcatatgtcactagtggagtatcgtactatccttagatatcgccttatgaat 17345107  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtg 160  Q
    ||| || ||  |||||||||| || |||||||||| | |||||||||    
T  17345106 ccactatttcctattgatgaggtgtgccctgtttgtcgtaaggcgtg 17345060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 4412605 - 4412754
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||||||||||||||||||||||| | ||||||| ||||| ||| ||||||||||  || ||||| |  ||||| ||| |||||||  | ||||||    
T  4412605 acatgctcaggattttcttctagctatcccgattgatgagttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcttatgatt 4412704  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || ||  |||||||||| || ||| |||| | | ||||||||||||    
T  4412705 ccactatttcctattgatgaggtgtgccttgttggtcgtaaggcgtgtct 4412754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 9684954 - 9685103
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||| |||| |||||||||||||||||| | ||||||||||||| ||| ||||||||||  || ||||| |  ||||| ||| |||||||| | | ||||    
T  9684954 acatactcaagattttcttctagctatccctattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgccttacgatt 9685053  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || ||  ||||||||||  | |||||||||| | ||||||||||||    
T  9685054 ccactatttcctattgatgaggcgtgccctgtttgtcgtaaggcgtgtct 9685103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 20142279 - 20142428
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||||||||||||||||||||||| | ||||||||||||  ||| |||||||||   || |||||    ||||| ||| |||||||| | ||||||    
T  20142279 acatgctcaggattttcttctagctatcccgattgatgggttaagtcagcatatgtcaacagtggagtattgtactatccttagatatcgccttatgatt 20142378  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || ||  || ||||||| || |||||||||| | ||||||||||||    
T  20142379 ccactatttcctaatgatgaggtgtgccctgtttgtcgtaaggcgtgtct 20142428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 41867447 - 41867596
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||||| ||||||||||||||||| | ||||||||||||| ||| ||||||||||  || ||||| |  ||||| ||| |||||||  | ||||||    
T  41867447 acatgctcagaattttcttctagctatcccgattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcttatgatt 41867546  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || ||  |||||||||| || || ||||||| | |||| |||||||    
T  41867547 ccactatttcctattgatgaggtgtgctctgtttgtcgtaagtcgtgtct 41867596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 44686985 - 44686927
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcac 72  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||  |||||||||    
T  44686985 acatgcttaagattttcttctagctatctcaattgatgggttaggtcagtatatgtcac 44686927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 19161367 - 19161422
Alignment:
Q  16 atgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtca 71  Q
    ||||||||||||||||||||||||||   |||||| |||||| ||| |||||||||    
T  19161367 atgctcaggattttcttctagctatcctgattgataggttaggtcagcatatgtca 19161422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 18744559 - 18744615
Alignment:
Q  16 atgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcac 72  Q
    ||||||| || ||||||||||||||| | ||||||||||||| | | ||||||||||    
T  18744559 atgctcaagaatttcttctagctatcccgattgatgggttaggttagcatatgtcac 18744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 4e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 28040658 - 28040802
Alignment:
Q  6 caagaagaacatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgct 105  Q
    |||| |||||||||||| |||||||||||||||||| | |||||| |||||| ||||||||||||||  || ||||| || ||||| ||| ||||||||     
T  28040658 caagcagaacatgctcaagattttcttctagctatcccgattgattggttaggtcaacatatgtcaccagtggagtatcatactatccttagatatcgcc 28040757  T
Q  106 taatgattccattactttttattgatgagatgcgccctgtttgcc 150  Q
    | |||||||||||| ||  || ||||| | || ||||||||||||    
T  28040758 ttatgattccattatttcctaatgatgtggtgtgccctgtttgcc 28040802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 7794454 - 7794603
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| ||||||||| ||||||||   ||||||||||||| ||||||||| ||||  || ||||||||  |||| ||| |||||||| | ||||||    
T  7794454 acatgctcatgattttcttatagctatccttattgatgggttaggtcaacatatatcaccagtggagtaccatgctatcctttgatatcgccttatgatt 7794553  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    |||||| ||  ||||||| || ||| || |||||| | ||||||||||||    
T  7794554 ccattatttcatattgataaggtgcaccttgtttgtcgtaaggcgtgtct 7794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 19035995 - 19035893
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||||||||  || ||||| || ||||| ||| |||||||| | ||||||    
T  19035995 acatgctcgggattttcttctagctatcccgattgatgagttaggtcaacatatgtcaccagtggagtatcatactatccttagatatcgccttatgatt 19035896  T
Q  114 cca 116  Q
    |||    
T  19035895 cca 19035893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 34645117 - 34644985
Alignment:
Q  31 ttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgattccattactttttattga 130  Q
    |||||||||||  ||||||||||| |||||| ||||||||||  ||  ||||||  | ||| |||||||||||  | ||||||||| || ||| || |||    
T  34645117 ttctagctatcctaattgatgggtaagatcagcatatgtcactagtgaagtaccgtattatccttcgatatcgtcttatgattccactattttctagtga 34645018  T
Q  131 tgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||||  | |||||||||| | ||||||||||||    
T  34645017 tgaggagtgccctgtttgtcataaggcgtgtct 34644985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 37917633 - 37917738
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||| ||||||||||||| | |||| | |||||||||||||  ||  |||||||||  ||||||||||  ||||||||  |||||||| | | ||||    
T  37917633 acatgcttaggattttcttcttgttatccctattgatgggttaggccagaatatgtcactagtagagtaccgtactattctcagatatcgcctcaagatt 37917732  T
Q  114 ccatta 119  Q
    ||||||    
T  37917733 ccatta 37917738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 15585428 - 15585360
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagta 82  Q
    ||||||||| ||||| ||| |||||||| | |||||||||||||  ||| |||||||||  ||||||||    
T  15585428 acatgctcaagatttacttttagctatccctattgatgggttaggccaaaatatgtcaccagtagagta 15585360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 25662859 - 25663005
Alignment:
Q  17 tgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgattcca 116  Q
    |||||| |||||||||||||||||| ||||||||||||| | ||| ||||||||||  || || ||||  ||||| |||||||||||  | |||||||||    
T  25662859 tgctcaagattttcttctagctatcccaattgatgggttgggtcagcatatgtcaccagtggaataccgtactatccttcgatatcgtcttatgattcca 25662958  T
Q  117 ttactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
     || ||  |||||||||| || ||| |||||| | ||||||||||||    
T  25662959 ctatttcctattgatgaggtgtgccttgtttgtcgtaaggcgtgtct 25663005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 27337261 - 27337112
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||| | | ||||||||||  || |||||||  ||||| |||||||||||  | ||||||    
T  27337261 acatgctcaagattttcttttagctatcccaattgatgggttaggttagcatatgtcaccagttgagtaccgtactatccttcgatatcgtcttatgatt 27337162  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| |  ||  |||||||||| || |||||||||| | |||||| |||||    
T  27337161 ccactttttcctattgatgaggtgtgccctgtttgtcgtaaggcatgtct 27337112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 433860 - 433711
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| |||||||||||||||||| |||||||||||||||  || ||||||||||   | ||||| |  ||||| |||||||||||  | ||||||    
T  433860 acatgctcaagattttcttctagctatcccaattgatgggttaggccagcatatgtcaccaattgagtatcggactatccttcgatatcgtcttatgatt 433761  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| |  ||  |||||||||| || || ||||||| | ||||||||||||    
T  433760 ccactttttcctattgatgaggtgtgcactgtttgtcgtaaggcgtgtct 433711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 15291562 - 15291711
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    |||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||  || ||||| |  ||||| ||| |||||||    ||||||    
T  15291562 acatgctcgggattttcttctagctatcccaattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcgtatgatt 15291661  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtgtct 163  Q
    ||| || ||| |||||||||| || | | |||||  | ||||||||||||    
T  15291662 ccactattttctattgatgaggtgtgtcatgtttatcgtaaggcgtgtct 15291711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20288 - 20232
Alignment:
Q  15 catgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtca 71  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  20288 catgctcaggattttcttgtagctatcccaattgatgggttaggtcaacatatgtca 20232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 9e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 53171066 - 53170920
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||   || ||||| |  |||||  || |||||| | | | ||||    
T  53171066 acatgctcaggattttcttctagctatcctaattgatgggttagttcagcatatatcatcagtggagtatcgtactatctttagatatcaccttacgatt 53170967  T
Q  114 ccattactttttattgatgagatgcgccctgtttgccttaaggcgtg 160  Q
    ||| || ||| |||||||||| || |||||||||| | |||||||||    
T  53170966 ccactattttctattgatgaggtgtgccctgtttgtcgtaaggcgtg 53170920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 25707071 - 25706994
Alignment:
Q  14 acatgctcaggattttcttctagctat-ctcaattgatgggttagatcaacatatgtcacacgtagagtaccacacta 90  Q
    ||||||| ||||||||||||||||||  | | ||||||||||||| ||| ||||||||||  ||||||||||| ||||    
T  25707071 acatgctgaggattttcttctagctacacccgattgatgggttaggtcagcatatgtcacttgtagagtaccaaacta 25706994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 32335417 - 32335330
Alignment:
Q  16 atgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgc 104  Q
    ||||||| |||||||||||||||||| | |||||||| |||| ||| |||||||||   || |||||||| |||| |||| ||||||||    
T  32335417 atgctcatgattttcttctagctatccctattgatggattaggtcatcatatgtcattagtggagtaccatacta-tcttagatatcgc 32335330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 48505745 - 48505792
Alignment:
Q  22 aggattttcttctagctatctcaattgatgggttagatcaacatatgt 69  Q
    |||||||| |||||||||||   |||||||||||||||||||||||||    
T  48505745 aggatttttttctagctatccatattgatgggttagatcaacatatgt 48505792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 24222459 - 24222379
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattct 94  Q
    |||||||||  |||||||| || ||||||| |||||||||||||    ||| ||||||| |||||||||||  ||||||||    
T  24222459 acatgctcaaaattttcttttaactatctctattgatgggttaggctgacacatgtcacccgtagagtaccgtactattct 24222379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 29862366 - 29862245
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttaga-tcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgat 112  Q
    ||||||||| |||||||||||||||||||| |||||||||||| | ||| ||||||||||  ||  |||| |  ||||| ||| |||||||| | |||||    
T  29862366 acatgctcatgattttcttctagctatctcgattgatgggttaaagtcagcatatgtcaccagtgaagtagcgtactatccttagatatcgccttatgat 29862267  T
Q  113 tccattactttttattgatgag 134  Q
    ||||||| ||  ||||||||||    
T  29862266 tccattatttcctattgatgag 29862245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 49018520 - 49018418
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcacacgtagagtaccacactattcttcgatatcgcttaatgatt 113  Q
    ||||||||| ||||||||||||||||||   ||||||||||||| ||| |  |||||||| || ||||| |  |||||  || |||||||| | ||||||    
T  49018520 acatgctcatgattttcttctagctatcctgattgatgggttaggtcagcgcatgtcacaagtggagtatcgaactatcattagatatcgccttatgatt 49018421  T
Q  114 cca 116  Q
    |||    
T  49018420 cca 49018418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 53786276 - 53786218
Alignment:
Q  14 acatgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcac 72  Q
    ||||||||| |||||||||||||||||    ||||||||||||| ||| ||||||||||    
T  53786276 acatgctcaagattttcttctagctattctgattgatgggttaggtcagcatatgtcac 53786218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 52411442 - 52411499
Alignment:
Q  15 catgctcaggattttcttctagctatctcaattgatgggttagatcaacatatgtcac 72  Q
    |||||||| |||||||||||||||||| | ||||||| ||||  ||| ||||||||||    
T  52411442 catgctcatgattttcttctagctatcccgattgatgagttaagtcagcatatgtcac 52411499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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