View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262-Insertion-5 (Length: 158)
Name: NF1262-Insertion-5
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 30920033 - 30920112
Alignment:
| Q |
79 |
gaagatttaaagtttatcttagcatacttgaattgtcttaacagcaggcttattgatttgttgaagacgactcgttatca |
158 |
Q |
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| T |
30920033 |
gaagatttaaagtttatcttaacatacttgaattgtcttaacagcaggcttattgatttgttgaagacgactcgttatca |
30920112 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 30910626 - 30910693
Alignment:
| Q |
91 |
tttatcttagcatacttgaattgtcttaacagcaggcttattgatttgttgaagacgactcgttatca |
158 |
Q |
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| T |
30910626 |
tttattttaacatacttgaattgtcttaacagcaggcttgttgatctgttgaagacgactcgttatca |
30910693 |
T |
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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 30932001 - 30932058
Alignment:
| Q |
101 |
catacttgaattgtcttaacagcaggcttattgatttgttgaagacgactcgttatca |
158 |
Q |
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| T |
30932001 |
catacttgaattgtcttcacagcaggcttgttaatttgcttaagacgacttgttatca |
30932058 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 29363173 - 29363110
Alignment:
| Q |
84 |
tttaaagtttatcttagcatacttgaattgtcttaacagcaggcttattgatttgttgaagacg |
147 |
Q |
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| T |
29363173 |
tttaaaatttattttcacatacttgaattgtcttaacagcaggtttattgatttgctgaagacg |
29363110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 29356750 - 29356710
Alignment:
| Q |
107 |
tgaattgtcttaacagcaggcttattgatttgttgaagacg |
147 |
Q |
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| T |
29356750 |
tgaattgtcttaacagcaggcttattgagctgttgaagacg |
29356710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 14498029 - 14498076
Alignment:
| Q |
101 |
catacttgaattgtcttaacagcaggcttattgatttgttgaagacga |
148 |
Q |
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| T |
14498029 |
catacctgaattgtcttaatagaaggtttattgatctgttgaagacga |
14498076 |
T |
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