View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262-Insertion-6 (Length: 277)
Name: NF1262-Insertion-6
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262-Insertion-6 |
 | |
|
| [»] chr6 (31 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 4461497 - 4461762
Alignment:
| Q |
12 |
ctattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggttt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4461497 |
ctattaggcctctatctgaaatttcattcacaaactcagatgacaaaataaacgagccgccaatgacaagatcaggcctaatgatccataaaaagggttt |
4461596 |
T |
|
| Q |
112 |
cttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattctttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4461597 |
cttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgtgatgctgccaaaatttacatagacaacagatcctggttctttt |
4461696 |
T |
|
| Q |
212 |
gattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgctaggtga |
277 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4461697 |
gattcaagccattcaagacatttagtatcttctttccaaagattggaatttaaagatgccaggtga |
4461762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 4470179 - 4470438
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| ||| ||||| |||| | |||||||||||||||||| || ||||||||||||||||||||||||| || |
|
|
| T |
4470179 |
attaggcctctatctgaaattccatttacaatctctgatgagaaaactaccgagccgccaatgacaagatcgggcctaatgatccacaaaaagggttgct |
4470278 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || |||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4470279 |
tgctatttgccaaaccccaagcaaactctaacagtttctctggagacataactgtgacgctgccgaaatttacatagacaacagatcctggttcttttga |
4470378 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgctag |
273 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4470379 |
ttcaagccactcaagacatttagtatcttctttccaaagattgaaatttaaagatgctag |
4470438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 4299576 - 4299323
Alignment:
| Q |
15 |
ttagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttctt |
114 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
4299576 |
ttaggcctctatttgaaatttcattctcaaactcagatgacaaaataaacaagccgccaatgacaaggtctggcctaatgatccacaaaaatggtttcct |
4299477 |
T |
|
| Q |
115 |
gctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgat |
214 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||| ||||| ||||| ||||| | || || ||| |
|
|
| T |
4299476 |
gcaattggccaaaccccaagcaatctctaacagttgctctggagtcataactgtaacgctgccaaaattcacataaacaaccgatcccggctccttggat |
4299377 |
T |
|
| Q |
215 |
tcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4299376 |
tcaagccattcaagacatttggtatcttctttccaaagattggaacctaaagat |
4299323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 3172110 - 3172373
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| ||||||| |||||||||| || |||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
3172110 |
acttgctattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaataatccacaaaaag |
3172209 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| | || || ||| ||||||| || |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
3172210 |
ggtttcttgctgttggctaaaccccaagcaaactctaataatttctcttgagacataactatgatgctgccaaaatttacataaacaacagattttgatt |
3172309 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3172310 |
cttttgtttcaagccattcaagacatttagtatcttctttccaaagattagaatctaaagatgc |
3172373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4514884 - 4514623
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| |||||||||| ||||||| | ||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4514884 |
acttgctattaggcctctatctgcaatttcattcacaaactcagacgacaaaaccactgagccaccaatgacaagatcaggcctaatgatccataaaaag |
4514785 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||| || || |||| ||||| | || ||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
4514784 |
gttttcttgctattggccaaaccccaagcaaactctaacaatttctccggagacataatcgtgatgctaccaaaattaacataaacaacagatcctgatt |
4514685 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4514684 |
cttttgattcaagccattcaagacatttagtatcttctttccaaagattggaacctaaagat |
4514623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 4622518 - 4622761
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4622518 |
attaggcctctacctgaaatttcattctcaaactcagatgacaaaataaacgagccgcccatgacaaggtcaggcctaatgatccacaaaaagggtttct |
4622617 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||| |||| | |||||||||||| || || ||| ||| | | ||| || || |
|
|
| T |
4622618 |
tgctatcagccaaaccccaagcaaactctaatagttgatctcgagtcatcactgtaatgctgccaaaattcacgtaaaca--agagtcaggttccttgga |
4622715 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaa |
259 |
Q |
| |
|
||||||||| || ||||| || ||||||||||||||||||||||| |
|
|
| T |
4622716 |
ttcaagccactcaagacacttgatatcttctttccaaagattggaa |
4622761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 4626327 - 4626581
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4626327 |
attaggcctctatctgaaatttcattctcaaactcggatgacgaaataaatgagccaccaatcacaagatcaggcctaatgatccacaaaaagggtttct |
4626426 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| || ||||| |||||||| || ||| || | |
|
|
| T |
4626427 |
tgctatcagccaaaccccaagcaaactctaacagtttctgtggagtcataactataacgctgccaaagttcacataaacaacagactttggttccttgaa |
4626526 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||||||||||||| ||||||| |
|
|
| T |
4626527 |
ttcaagccattcaagacaattggtgtcttctttccaaagattggaacctaaagat |
4626581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 4259910 - 4259647
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
4259910 |
attaggcctctatccgaaatttcactctcaaactcagatgacaaaataaaggagccaccaataatgaggtcaggcctaatgatccacaaaaagggtttct |
4259811 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| | |||||| ||||||||||||| | |||||||||||| || || |||||||| | | ||| || | |
|
|
| T |
4259810 |
tgctattggccaatccccaagcaaactctaaaaattgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttaaa |
4259711 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgctaggtga |
277 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
4259710 |
ttcaagccattcaagacatttggtatcttctttccaaagattggaacctaacgatgccaggtga |
4259647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 4266929 - 4266666
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| || ||| ||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4266929 |
acttgctattagtcctctatctgaaatttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaa |
4266830 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||| || | || | | |||||||| || ||| |||||||||||||| |||||||||| || || |
|
|
| T |
4266829 |
gggttcttgctgttggccaaaccccaagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagatcttggtt |
4266730 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266729 |
cttttgattcaagccactcaagacatttagtatcttctttccaaagattggaatttaaagatgc |
4266666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 4574677 - 4574939
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| ||| |||||||| |||| | |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4574677 |
acttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccacaaaaag |
4574776 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||||| ||||| | |||||||||||||||||||||| || | || ||| |||||| | || |||||||||||||||||| |||||||||| || || |
|
|
| T |
4574777 |
ggttttttgctgttggccaaaccccaagcaaactctacgagcttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggtt |
4574876 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatg |
269 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
4574877 |
cttttgattcaatccattcaagacatttagtatcttctttccaaagattagagtctaaagatg |
4574939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4490118 - 4489857
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| ||| ||||||||||| | ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
4490118 |
acttgctattagtcctctatctgaaatttctttcaaaaaatcagatgacaacacctgtgagccaccaataacaagatcaggcctaatgatccacaaaaag |
4490019 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||| || | || ||| |||||| | || |||||||||||||||||| ||||||||||||| || |
|
|
| T |
4490018 |
ggtttcttgctgttggccaaaccccatgcaaactctaatagcttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcctggtt |
4489919 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
4489918 |
cttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagat |
4489857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 4256351 - 4256135
Alignment:
| Q |
43 |
aaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactct |
142 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4256351 |
aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatacacaaaaatggtttcttgctattggccaatccccaagcaaactct |
4256252 |
T |
|
| Q |
143 |
aacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaagccattcgagacatttagtatctt |
242 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||| || || |||||||| | | ||| || |||||||||||||| ||||| || ||||||| |
|
|
| T |
4256251 |
aacagttgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatctt |
4256152 |
T |
|
| Q |
243 |
ctttccaaagattggaa |
259 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4256151 |
ctttccaaagattggaa |
4256135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 4516703 - 4516938
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctat |
119 |
Q |
| |
|
|||||||| ||| |||||||| |||| || ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
4516703 |
cctctatccgaagtttcattcacaaaatcggatgacaaaataaccgagccaccaatgacaaggtcaggcctaataatccacaaaaaaggtttcttgctgt |
4516802 |
T |
|
| Q |
120 |
cagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaag |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| || | || ||| |||||||| ||||| || ||||| ||| ||| || |||||||| |
|
|
| T |
4516803 |
tggccaaaccccaagcgaactctaacagttgatctggagtcatgaccgtgatgcttccaaaattcacataaactacagaaccttgttccttagattcaag |
4516902 |
T |
|
| Q |
220 |
ccattcgagacatttagtatcttctttccaaagatt |
255 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4516903 |
ccattcaagacatttcatatcttctttccaaagatt |
4516938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 4506241 - 4506485
Alignment:
| Q |
22 |
tctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctatca |
121 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4506241 |
tctatctgaaatttcatttgcaaactctgaagacaaaaccactgagccaccaattacaagatcaggcctaatgatccacaaaaagggtttcttgctattg |
4506340 |
T |
|
| Q |
122 |
gccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaagcc |
221 |
Q |
| |
|
||||||||||||||||||||||| | || || |||| ||||| || || ||| |||||||| ||||| |||||||| | | |||||||||||| |||| |
|
|
| T |
4506341 |
gccaaaccccaagcaaactctaaaaatttctccggagacataattgtgatgcttccaaaattcacataaacaacagaagccggttcttttgattccagcc |
4506440 |
T |
|
| Q |
222 |
attcgagacatttagtatcttctttccaaagattggaatttaaag |
266 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
4506441 |
attcgagacatttagtatcctctttccaaagatttgaatctaaag |
4506485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 4560875 - 4561121
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| ||| |||||||| |||| | |||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4560875 |
acttgctattagtcctctatctgaaatttctttcaaaaa-tcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccataaaaat |
4560973 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| || || ||| | |||| | || |||||||||||||||||| ||||||||||||| || |
|
|
| T |
4560974 |
ggtttcttgctgttggccaaaccccaagcaaactctaaggcttc-tcttgagacttaacagtgatgctgccaaaatttacataaacaacagatcctggtt |
4561072 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagatt |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4561073 |
cttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
4561121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 4564093 - 4564332
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctat |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
4564093 |
cctctatctgaaatttcattcacaaactcagatgacaaaacgactgagccaccaatgacaaggtcaggcctaatgatccacaaaaagggtttattgcaat |
4564192 |
T |
|
| Q |
120 |
cagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaag |
219 |
Q |
| |
|
||||| ||||||||||| || |||||||| | || |||||||||| | ||| |||||||| ||||| ||||| ||||| | || || |||||||| |
|
|
| T |
4564193 |
tggccaacccccaagcaaattccaacagttgttttggtgtcataactgtaatgcttccaaaattcacataaacaacggatcccggctccttggattcaag |
4564292 |
T |
|
| Q |
220 |
ccattcgagacatttagtatcttctttccaaagattggaa |
259 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
4564293 |
ccattcaagacacttagtatcttctttccaaaggttggaa |
4564332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 4598553 - 4598803
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctat |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598553 |
cctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggtttcttgctat |
4598652 |
T |
|
| Q |
120 |
cagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaag |
219 |
Q |
| |
|
||||||||||||||||| ||||||| | || | |||||| || | | ||| |||||||| ||||| |||||||| | || ||| || |||||||| |
|
|
| T |
4598653 |
tggccaaaccccaagcaaagtctaacaacttttctgcagtcatcaccgttatgctcccaaaattcacataaacaacagaccttggttcattggattcaag |
4598752 |
T |
|
| Q |
220 |
ccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
||| || ||||| || |||||||||||||||||||||| | ||||||||| |
|
|
| T |
4598753 |
ccagtcaagacacttggtatcttctttccaaagattggtacctaaagatgc |
4598803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 4504147 - 4503898
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctat |
119 |
Q |
| |
|
||||||| ||| |||||||| |||| ||||||||||| | ||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
4504147 |
cctctattagaagtttcattcacaaaatcagatgacaacacctctgagccaccaataacaagatcaggcctaataatccacaaaaaaggtttcttgctat |
4504048 |
T |
|
| Q |
120 |
cagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaag |
219 |
Q |
| |
|
||||||||||||||||||||||||| || ||| || |||||||| | |||||||||||||||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
4504047 |
tggccaaaccccaagcaaactctaacaatttatcttaagacataactgtaatgctgccaaaatttacataaacaacagatcctggttcttttaattcaag |
4503948 |
T |
|
| Q |
220 |
ccattcgagacatttagtatcttctttccaaagattggaatttaaagatg |
269 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
4503947 |
ccaatcaagacatttagtatcttctttccaaagattagagtctaaagatg |
4503898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 4481062 - 4481310
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||| ||| | ||||||||||||| | | ||||| ||||||||||| | || |||||| |||||||||||| |
|
|
| T |
4481062 |
acttgctattaggcctctatttgaaatttctttcaaatactcagatgacaacaccactgagccaccaatgacaagattagacctaataatccacaaaaag |
4481161 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||| |||| || ||| ||||| || || |||||||||||||||||| ||||||||||||| || |
|
|
| T |
4481162 |
ttttttttgctattggcaaaaccccaagcaaactctaagagtttctcttgagacataattgtgatgctgccaaaatttacataaacaacagatcctggtt |
4481261 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagatt |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4481262 |
cttttgattcaagccattcaagacatttagtatcttctttccaaagatt |
4481310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 4613474 - 4613231
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
4613474 |
attaggcctctatctgaaatttcattcacaaactctgatgacaaaacaactgagccgccaatgacaagatcaggcctaatgatccacaaaaagggttgct |
4613375 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| || | ||||||||| | | ||| |||||||| ||||| ||||| || | ||| || || |
|
|
| T |
4613374 |
tgctattcgccaaaccccaagcaaactctaatagtttttctgcagtcataacggtcatgctcccaaaattcacataaacaacggacttcggttccttgga |
4613275 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattgg |
257 |
Q |
| |
|
||||||||| || ||||| || |||||||||||||||||||||| |
|
|
| T |
4613274 |
ttcaagccaatcaagacacttggtatcttctttccaaagattgg |
4613231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 4457963 - 4458227
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| |||||| |||||||| ||| |||||||| |||| || |||||||||| || |||||| ||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
4457963 |
acttgctattaagcctctatcagaagtttcattcacaaaatccgatgacaaaacaaccgagccaccaatgacaagatcaggcctagttatccacaaaaaa |
4458062 |
T |
|
| Q |
107 |
ggttt-cttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgat |
205 |
Q |
| |
|
||||| |||||| | |||||| |||||||||| ||||| || | || ||| |||||||| || ||| |||||||||||||| | |||||| || | |
|
|
| T |
4458063 |
ggttttcttgctgttggccaaaacccaagcaaattctaagagcttctcttgagacataactgtgatgcttccaaaatttacataaataacagactttggt |
4458162 |
T |
|
| Q |
206 |
tcttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4458163 |
tcttttgattcaagccactcaagacatttagtatattctttccaaagattggaatttaaagatgc |
4458227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 4579807 - 4580051
Alignment:
| Q |
13 |
tattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttc |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| |||||||||| | |||||||| |||||||| || ||||||||||||||||||||||||| | |
|
|
| T |
4579807 |
tattaggcctctatctgaaatttcattcacaaactccgatgacaaaacagctgagccgccgatgacaagatcgggcctaatgatccacaaaaagggttgc |
4579906 |
T |
|
| Q |
113 |
ttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttg |
212 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||| || | ||||||||||| | ||| |||||||| ||||| |||||||| | | ||| || | |
|
|
| T |
4579907 |
ttgctatttgctaaaccccatgcaaactctaacagtttttctgcagtcataactgtcaagctcccaaaattcacataaacaacagacctaggttccttgg |
4580006 |
T |
|
| Q |
213 |
attcaagccattcgagacatttagtatcttctttccaaagattgg |
257 |
Q |
| |
|
|||||||||| | ||||| || |||||||||||||||| ||||| |
|
|
| T |
4580007 |
attcaagccaataaagacacttggtatcttctttccaaaaattgg |
4580051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 4602158 - 4602410
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4602158 |
acttgctattaggcctctatctgaaatttcatttgtaaactcagatgacaaaatcactgagccaccaatgacaagatcaggcctaatgatccacaaaaat |
4602257 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||||| | || || |||||||||||||| || ||||| | ||||| || |||||||||| | |||||||||||| ||||| ||||| ||||| | | |
|
|
| T |
4602258 |
ggtttatggcaattggccaaaccccaagcgaattctaataattgatggggtgtcataactgtaatgctgccaaaattcacataaacaacggatcccggct |
4602357 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaa |
259 |
Q |
| |
|
| || |||||||||||||| ||||| | ||||||||||||||| || |||||| |
|
|
| T |
4602358 |
ccttggattcaagccattcaagacactcagtatcttctttccagaggttggaa |
4602410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 4571348 - 4571591
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| |||||||||| || ||||| ||||||||||| || ||||||||||||||||||||| ||| || |
|
|
| T |
4571348 |
attaggcctctatctgaaatttcattcacaaactccgatgacaaaacaactgagccaccaatgacaagatcgggcctaatgatccacaaaaagagttgct |
4571447 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||| || | ||||||||||| ||| |||||||| ||||| ||||| || | | ||| ||||| |
|
|
| T |
4571448 |
tgctatttgctaaaccccatgcaaactctaacagtttttctgaagtcataactgtcctgctcccaaaattcacataaacaacggacctcggttcctttga |
4571547 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattgg |
257 |
Q |
| |
|
||||||||| || ||||| || ||||||||||||||||||||| |
|
|
| T |
4571548 |
ttcaagccaatcaagacacttgttatcttctttccaaagattgg |
4571591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 4586012 - 4586270
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||| || || || ||||||||||| ||||| ||||||||||| ||||| ||| || |
|
|
| T |
4586012 |
attaggcctctatctgaaatttcattcttaaactcagatgacaaaaccaaggaaccaccaatgacaagatcaggtctaatgatccataaaaaatgttgct |
4586111 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| || | ||||||||||| ||| |||||||| ||||| ||||| || | | ||| ||||| |
|
|
| T |
4586112 |
tgctattggccaaaccccaagcaaactctaatagtttttctgtagtcataactgttgtgctcccaaaattcacataaacaacggacctcggttcctttga |
4586211 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgcta |
272 |
Q |
| |
|
||||||||| || ||||| || ||||| |||||||||||||| | | |||||||||||| |
|
|
| T |
4586212 |
ttcaagccaatcaagacacttggtatcctctttccaaagatttgtacttaaagatgcta |
4586270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 4592613 - 4592842
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctat |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| || | ||| ||||||||||| ||||||||||||||||||||||| ||||| |||| || |
|
|
| T |
4592613 |
cctctatctgaaatttcattcacaaactccgatgacaaaacaattgtgccaccaatgacaagatcaggcctaatgatccacaaaaaaggtttattgcaat |
4592712 |
T |
|
| Q |
120 |
cagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaag |
219 |
Q |
| |
|
||||||||||||||||||||||||| || || | ||||||||| | |||||| ||||| ||||| ||||| || || ||||| || |||||||| |
|
|
| T |
4592713 |
tggccaaaccccaagcaaactctaacattttctcttcattcataactgtaaggctgccgaaattcacataaacaacggaacccgattccttcgattcaag |
4592812 |
T |
|
| Q |
220 |
ccattcgagacatttagtatcttctttcca |
249 |
Q |
| |
|
||||| ||||| | ||||||||||||||| |
|
|
| T |
4592813 |
ccatttaagacactcagtatcttctttcca |
4592842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 4557501 - 4557744
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||||| || ||||| || |||||||| || ||||||||||||||||||||||||| || |
|
|
| T |
4557501 |
attaggcctctatctgaaatttcattgacaaactccgatgacaaaacaactgagccaccgatgacaagatcgggcctaatgatccacaaaaagggttgct |
4557600 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||| || | |||||||||| | ||| |||||||| ||||| ||||| || | | ||| || || |
|
|
| T |
4557601 |
tgctatttgctaaaccccatgcaaactctaacagtttttctgccgtcataactgtcatgctcccaaaattcacataaacaacggacctcggttccttgga |
4557700 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattgg |
257 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||||||||||| |
|
|
| T |
4557701 |
ttcaagccaaccaagacacttgttatcttctttccaaagattgg |
4557744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 4617391 - 4617651
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||| |||||||||||| ||||| | ||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
4617391 |
acttgctattaggcctctatctgcaatttcatttgtaaactcagatgagaaaatcactgagccaccaatgacaagatcaggccttatgatccacaaaaat |
4617490 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
| |||||||| || ||||||||||||||||| || | | ||| || || |||||||||| | |||||| ||||| ||||| ||||| ||||| | | |
|
|
| T |
4617491 |
gatttcttgcaattggccaaaccccaagcaaattccagtaattgctcgggtgtcataactgtaatgctgccgaaattcacataaacaactgatcccggct |
4617590 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaaga |
267 |
Q |
| |
|
| || ||||||||||| || ||||| | ||||||||||||||||| ||||||| |||||| |
|
|
| T |
4617591 |
ccttggattcaagccaatcaagacactctgtatcttctttccaaaggttggaatctaaaga |
4617651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 4568438 - 4568535
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgct |
117 |
Q |
| |
|
|||||||| ||| || ||||| ||||||| ||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4568438 |
cctctatccgaagttccattcacaaactcggatgacaaaataactgagccaccaatgacaagctaaggcctaatgatccacaaaaaaggtttcttgct |
4568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 4391877 - 4391794
Alignment:
| Q |
16 |
tagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatcca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || |||||| | | || | |||||||||||||||| ||||||||||||| |
|
|
| T |
4391877 |
tagacctctatctgaaatttcattctcatactcatataacaaaacacatgacctgccaatgacaaggtcaagcctaatgatcca |
4391794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 4835571 - 4835515
Alignment:
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||||| |||| ||||||||| |
|
|
| T |
4835571 |
ttcaagccattcaagacattttgtatcttccttccaaagatcggaacctaaagatgc |
4835515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 3475 - 3230
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
3475 |
attaggcctctatctgaaatttcattctcaaattctgatgacaaaataaacgagccgccaatgacaagatcaggcctaatgatccacaaaaacggtttct |
3376 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| | |||||| ||||| ||||| |||||||| | | ||| || || |
|
|
| T |
3375 |
tgctatcggccaaaccccaagcaaattctaacagttgatttggagtcataactgtaatgctgccgaaattcacataaacaacagactcaggttccttgga |
3276 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaa |
259 |
Q |
| |
|
||| |||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
3275 |
ttcgagccattcaagacacttggtatcttctttccaaagattggaa |
3230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 3086796 - 3087052
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
3086796 |
attagacctctatctgaaatttctttctcaaactcagatgacataataaaggagccgccaatgacaagatcaggcctaatgatccacaaaaatggtttct |
3086895 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| || |||||||||||| | |||||||||| | ||||| |||||||| | | | ||||| |
|
|
| T |
3086896 |
tgctattggccaaaccccaagcaaactctaatagttgctcttgagtcataactgtaatgctgccaaaactcacataaacaacagactcaagtccctttga |
3086995 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
3086996 |
ttcaagccattcaagacacttggtatcttctttccaaagattggaacctaaagatgc |
3087052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 4442 - 4188
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4442 |
attaggcctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaaggatttct |
4343 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
| | || | |||| ||||||||||||||||||||||||| ||||||||||||| | ||| |||||||| ||||| ||||| || | | ||| || || |
|
|
| T |
4342 |
tacaattggtcaaaacccaagcaaactctaacagttgatctggagtcataactgtaatgcttccaaaattcacataaacaaccgactcaggttccttgga |
4243 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
| ||||||| || ||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
4242 |
tgcaagccactcaagacacttggtatcttctttccaaagattggaacctaaagat |
4188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 24103368 - 24103631
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||| || ||| ||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
24103368 |
acttgctattagtcctctatctgaaacttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaa |
24103467 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| || | || | | |||||||| || ||| |||||||||||||| ||||| |||| || || |
|
|
| T |
24103468 |
gggttcttgctattggccaaaccccaagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaactgatcttggtt |
24103567 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagatgc |
270 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24103568 |
cttttgattcaagccactcaagacatttagtatcttctttccaaagattggaatttaaagatgc |
24103631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 27999856 - 27999753
Alignment:
| Q |
13 |
tattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttc |
112 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||||||||||| | ||||| ||||||||||| | ||||||| ||||||||||||| |||||| |
|
|
| T |
27999856 |
tattaggcctctatctgaaatttctttcctaaactcagatgacaaaaccactgagccaccaatgacaagattaggcctagtgatccacaaaaaaggtttc |
27999757 |
T |
|
| Q |
113 |
ttgc |
116 |
Q |
| |
|
|||| |
|
|
| T |
27999756 |
ttgc |
27999753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 20863599 - 20863346
Alignment:
| Q |
14 |
attagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttct |
113 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| ||||||| ||||| | |||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20863599 |
attaggcctctatctgaaatttcattcacaaacgcagatgaaaaaatcaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggtttct |
20863500 |
T |
|
| Q |
114 |
tgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttga |
213 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||| || || || ||| |||| | ||||||||||||||||| |||| |||||| | |||||| || |
|
|
| T |
20863499 |
tgctgttggccaaaccccatgcaaactctaacaatttttctacagacatgactgtggtactgccaaaatttacatatacaatagatcccggttctttcga |
20863400 |
T |
|
| Q |
214 |
ttcaagccattcgagacatttagtatcttctttccaaagattggaatttaaaga |
267 |
Q |
| |
|
|||||||||| | ||||||| ||| ||||||||||||||| | |||| |||||| |
|
|
| T |
20863399 |
ttcaagccatgcaagacattcagtgtcttctttccaaagacttgaatctaaaga |
20863346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 1674601 - 1674856
Alignment:
| Q |
13 |
tattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttc |
112 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||||||||||| | ||||| ||||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
1674601 |
tattaggcctctatctgaaatttctttcataaactcagatgacaaaaccactgagccaccaatgacaagatcaggcctagtgatccacaaaaaaggtttc |
1674700 |
T |
|
| Q |
113 |
ttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttg |
212 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| | ||| || | |
|
|
| T |
1674701 |
ttgcaatcggccaaaccccaagcaaactccaatagttgatctggagtcataacaataatgctaccgaaattcacataaacaaccgatcccggttcgttgg |
1674800 |
T |
|
| Q |
213 |
attcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||| |||||| ||||||| |
|
|
| T |
1674801 |
attcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagat |
1674856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 16686015 - 16685781
Alignment:
| Q |
22 |
tctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctatca |
121 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| | || |||| ||||||||| |||| |||||||||||| ||| ||| |||||||| |
|
|
| T |
16686015 |
tctatctgagatttcattcttaaactcagatgacaaaaccacggaaccgcaaatgacaagatcagacctaatgatccattgaaaatgttgcttgctattg |
16685916 |
T |
|
| Q |
122 |
gccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgattcttttgattcaagcc |
221 |
Q |
| |
|
| ||||||||||||||||||||| |||| || | ||||||||||| | ||| |||||||| ||||| ||||| || | | ||| || |||||||||| |
|
|
| T |
16685915 |
gtcaaaccccaagcaaactctaatagtttttctgcagtcataactgtcatgctcccaaaattcacataaacaacggaactcggttccttggattcaagcc |
16685816 |
T |
|
| Q |
222 |
attcgagacatttagtatcttctttccaaagattg |
256 |
Q |
| |
|
| || ||||| || ||||||| ||||||||||||| |
|
|
| T |
16685815 |
aatcaagacacttggtatcttatttccaaagattg |
16685781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 1281483 - 1281743
Alignment:
| Q |
7 |
acttactattagacctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaag |
106 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
1281483 |
acttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaat |
1281582 |
T |
|
| Q |
107 |
ggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgcgacgctgccaaaatttacatagacaacagatcctgatt |
206 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| || ||||| || ||||||||||||| | ||| || ||||| ||||| |||||||||| | || |
|
|
| T |
1281583 |
ggtttcttgctattagccagaccccaagcaaattcctgaagttgctctggagtcataactgtaatgcttccgaaattcacataaacaacagatctcggtt |
1281682 |
T |
|
| Q |
207 |
cttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaaga |
267 |
Q |
| |
|
| || ||||||||||||| ||||| | |||||||||||||||| ||||||| |||||| |
|
|
| T |
1281683 |
ccttcgattcaagccattgaagacactcgatatcttctttccaaaggttggaatctaaaga |
1281743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 3259 - 3162
Alignment:
| Q |
20 |
cctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaagggtttcttgct |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||| | | || ||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
3259 |
cctctatctgaagtttcattctcaaactcatataacaaagcacatgatccgccaatgacaaggtcagacctaatgatccacacaaagggtttcttgct |
3162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 4 - 93
Alignment:
| Q |
179 |
aaatttacatagacaacagatcctgattcttttgattcaagccattcgagacatttagtatcttctttccaaagattggaatttaaagat |
268 |
Q |
| |
|
||||| ||||| ||||| ||||| | ||| || |||||||||||||| ||||| | |||||||||||||||||| |||||| ||||||| |
|
|
| T |
4 |
aaattcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagat |
93 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University