View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12620_high_5 (Length: 317)
Name: NF12620_high_5
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12620_high_5 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 470 - 166
Alignment:
| Q |
1 |
tcaatgttcctaactagctgcatgaataaaacaggttgcttttatcataaccaatggtttccatttccctatactaattactaatacttgacaacaccgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
470 |
tcaatgttcctaactagctgcatgaataaaacagtttgcttttatcataaccaatggtttccatttccctatactaattactacttcttgacaacaccgt |
371 |
T |
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| Q |
101 |
ttggtttgtagtcattat---gtcaaagtagcttaatccaaactccaaaacttgtttctgtttccaccttttggtcactcaagatgaggtctgaaaatat |
197 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
370 |
ttggtttgtagtcattattatgtcaaagtagcttaatccaaactccaaaacttgtttctgtttccaccttttggtcactcaagatgaggtctgaaaatat |
271 |
T |
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| Q |
198 |
gggatcattgttttcactgcaaaatcacaaccttttctgtgttaaatttgcagcatcatttttcttagttggtcttgcttttcgtcttctcttttgggat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270 |
gggatcattgttttcactgcaaaatcacaaccttttctgtgttaaatttgcagcatcatttttcttagttggtcttgcttttcgtcttctcttttgggat |
171 |
T |
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| Q |
298 |
tcttt |
302 |
Q |
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||||| |
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| T |
170 |
tcttt |
166 |
T |
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