View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12620_low_13 (Length: 279)
Name: NF12620_low_13
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12620_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 42155910 - 42155663
Alignment:
| Q |
18 |
ctggcgctgaaatttgaaatatatgctattgtttgttaatattaaatttgtgaatctacctatcattctgttattttccctttggatcagtagttgttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42155910 |
ctggcgctgaaatttgaaatatatgctattgtttgttaatattaaatttgtgaatctacctatcattctgttattttccctttggatcagtagttgttat |
42155811 |
T |
|
| Q |
118 |
cacaaaaatccaacgtttaatttgtaaattatcaaaccaaatccccaacggtccaatttcacgtgatcacctctaagataaacaagaataaacaatctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42155810 |
cacaaaaatccaacgtttaatttgtaaattatcaaaccaaatccccaacggtccaatttcacgtgaccacctctaagataaacaagaataaacaatctaa |
42155711 |
T |
|
| Q |
218 |
aacaggacggtaactaacgtgccatgacactataaggacaagtttttg |
265 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42155710 |
aacaggacggtaactaatgtgccatgacactataaggacaagtttttg |
42155663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University