View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12620_low_14 (Length: 279)
Name: NF12620_low_14
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12620_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 40135420 - 40135561
Alignment:
| Q |
12 |
tcgttcactcccaaaataattgatgtatttgatcatttcacacatgttaagtaaattatgtaaatgaaagagataatcaatttttacccaatttataatt |
111 |
Q |
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| T |
40135420 |
tcgttcaatcccaaaataattgatgtatttgatcatttcacacatgttaagtaaattatgtaaatgaaagagataatcaatttttacccaatttataatt |
40135519 |
T |
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| Q |
112 |
taagtataaaatttcatgttttcataatagttattcatagac |
153 |
Q |
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| T |
40135520 |
taagtataaaatttcatgttttcataatagttatttatagac |
40135561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 40135643 - 40135762
Alignment:
| Q |
154 |
ttaagatcaatgactgatgtgtccaggattatttagcgtcgtttacaacaaataagcaaaaacataaatttatacaattttgtgtaagttgtggatcaca |
253 |
Q |
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| T |
40135643 |
ttaagatcaatgaccgatgtgtccaggattatttggcgtcgtttacaacaaataagcaaaaacataaatttatacaattttgtgtaagttgtggatcaca |
40135742 |
T |
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| Q |
254 |
gaaattatcagtgcaatata |
273 |
Q |
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| T |
40135743 |
gaaattgccattgcaatata |
40135762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 22756181 - 22756225
Alignment:
| Q |
38 |
atttgatcatttcacacatgttaagtaaattatgtaaatgaaaga |
82 |
Q |
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| T |
22756181 |
atttgatcatttcacacatattaaggaaattgtataaatgaaaga |
22756225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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