View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12620_low_4 (Length: 471)

Name: NF12620_low_4
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12620_low_4
NF12620_low_4
[»] scaffold0026 (2 HSPs)
scaffold0026 (121-460)||(12534-12872)
scaffold0026 (15-110)||(12437-12543)
[»] scaffold0634 (1 HSPs)
scaffold0634 (50-460)||(2747-3156)
[»] chr2 (18 HSPs)
chr2 (18-460)||(26582856-26583313)
chr2 (122-460)||(23168954-23169294)
chr2 (122-460)||(23580211-23580551)
chr2 (49-234)||(23089594-23089779)
chr2 (90-349)||(23062869-23063127)
chr2 (21-234)||(23101994-23102207)
chr2 (57-157)||(23878325-23878425)
chr2 (46-161)||(21907750-21907865)
chr2 (100-251)||(26884489-26884639)
chr2 (89-234)||(24660876-24661021)
chr2 (15-152)||(5706610-5706759)
chr2 (59-161)||(29281368-29281470)
chr2 (78-185)||(25181501-25181606)
chr2 (12-110)||(23264515-23264613)
chr2 (59-152)||(9957-10050)
chr2 (121-349)||(23264301-23264524)
chr2 (89-161)||(27208322-27208394)
chr2 (89-161)||(27210657-27210729)
[»] chr6 (26 HSPs)
chr6 (18-460)||(29614738-29615195)
chr6 (46-375)||(25396343-25396671)
chr6 (51-229)||(18799754-18799932)
chr6 (49-234)||(21565751-21565936)
chr6 (15-199)||(12167637-12167832)
chr6 (15-199)||(19286546-19286741)
chr6 (343-459)||(19786751-19786866)
chr6 (59-199)||(19877730-19877870)
chr6 (15-199)||(19883506-19883701)
chr6 (343-459)||(12167420-12167535)
chr6 (343-459)||(19877513-19877628)
chr6 (343-459)||(19883289-19883404)
chr6 (49-251)||(19300308-19300509)
chr6 (78-199)||(19786529-19786650)
chr6 (343-459)||(19286329-19286444)
chr6 (15-152)||(34640575-34640724)
chr6 (15-152)||(34647249-34647398)
chr6 (57-226)||(19471914-19472082)
chr6 (15-110)||(24513370-24513465)
chr6 (59-152)||(20008529-20008622)
chr6 (15-161)||(25470290-25470448)
chr6 (17-139)||(21365067-21365200)
chr6 (17-139)||(23969049-23969182)
chr6 (15-66)||(19786455-19786506)
chr6 (17-66)||(19877874-19877923)
chr6 (121-184)||(9186841-9186903)
[»] chr3 (18 HSPs)
chr3 (59-459)||(41455741-41456142)
chr3 (57-456)||(18914193-18914590)
chr3 (21-161)||(55499658-55499798)
chr3 (51-161)||(16802029-16802139)
chr3 (70-252)||(13324381-13324562)
chr3 (18-151)||(24192274-24192418)
chr3 (334-391)||(18136117-18136174)
chr3 (121-252)||(13302844-13302974)
chr3 (121-252)||(13313520-13313650)
chr3 (338-391)||(18129607-18129660)
chr3 (59-161)||(14865216-14865319)
chr3 (16-65)||(10390034-10390083)
chr3 (16-65)||(10415123-10415172)
chr3 (16-65)||(10421793-10421842)
chr3 (51-116)||(12034007-12034072)
chr3 (400-456)||(18136249-18136306)
chr3 (282-386)||(9533232-9533335)
chr3 (401-456)||(18129736-18129792)
[»] scaffold0029 (4 HSPs)
scaffold0029 (121-460)||(110939-111284)
scaffold0029 (59-157)||(91783-91881)
scaffold0029 (59-157)||(97509-97607)
scaffold0029 (18-66)||(111330-111378)
[»] scaffold0456 (4 HSPs)
scaffold0456 (121-288)||(241-407)
scaffold0456 (121-288)||(7386-7552)
scaffold0456 (15-99)||(409-504)
scaffold0456 (15-99)||(7554-7649)
[»] chr7 (28 HSPs)
chr7 (18-460)||(13123506-13123967)
chr7 (59-324)||(13742860-13743121)
chr7 (68-460)||(12710496-12710896)
chr7 (12-234)||(16676623-16676845)
chr7 (12-234)||(17650859-17651081)
chr7 (343-460)||(13742686-13742803)
chr7 (15-199)||(13006706-13006901)
chr7 (90-328)||(46625166-46625403)
chr7 (90-349)||(13678649-13678906)
chr7 (51-161)||(11389910-11390020)
chr7 (343-459)||(13006489-13006604)
chr7 (57-135)||(20311631-20311709)
chr7 (15-150)||(12591230-12591377)
chr7 (69-184)||(11383440-11383554)
chr7 (59-161)||(16090457-16090559)
chr7 (89-161)||(14320243-14320315)
chr7 (295-386)||(18607248-18607339)
chr7 (46-135)||(21231554-21231643)
chr7 (282-386)||(147453-147556)
chr7 (59-139)||(2464758-2464838)
chr7 (59-139)||(3858007-3858087)
chr7 (17-66)||(3857953-3858003)
chr7 (332-386)||(16475929-16475983)
chr7 (59-149)||(29181690-29181780)
chr7 (68-116)||(2966383-2966431)
chr7 (18-66)||(12710435-12710483)
chr7 (347-391)||(13318007-13318051)
chr7 (68-116)||(20907038-20907086)
[»] chr4 (15 HSPs)
chr4 (15-460)||(8046420-8046893)
chr4 (12-135)||(15407485-15407608)
chr4 (49-151)||(14486052-14486154)
chr4 (334-391)||(14555881-14555938)
chr4 (100-240)||(11847397-11847537)
chr4 (189-252)||(14485975-14486037)
chr4 (15-152)||(53483022-53483171)
chr4 (59-161)||(16147412-16147514)
chr4 (122-234)||(8834185-8834297)
chr4 (68-185)||(27905613-27905729)
chr4 (90-182)||(15244566-15244658)
chr4 (282-383)||(18212523-18212623)
chr4 (60-232)||(13887086-13887258)
chr4 (60-232)||(13887943-13888115)
chr4 (90-234)||(15307415-15307563)
[»] scaffold0117 (1 HSPs)
scaffold0117 (18-460)||(9167-9628)
[»] chr8 (13 HSPs)
chr8 (59-460)||(23865615-23866026)
chr8 (343-460)||(19902808-19902924)
chr8 (12-135)||(14057148-14057271)
chr8 (12-135)||(25111385-25111508)
chr8 (334-389)||(19987990-19988045)
chr8 (57-349)||(18613409-18613697)
chr8 (59-185)||(24321252-24321376)
chr8 (65-234)||(21931018-21931187)
chr8 (15-66)||(17054009-17054060)
chr8 (335-385)||(20005423-20005473)
chr8 (407-456)||(20005563-20005612)
chr8 (368-459)||(17053780-17053870)
chr8 (18-66)||(23866030-23866078)
[»] scaffold1773 (2 HSPs)
scaffold1773 (59-328)||(324-592)
scaffold1773 (343-460)||(153-269)
[»] scaffold0247 (1 HSPs)
scaffold0247 (15-234)||(10610-10829)
[»] scaffold0249 (2 HSPs)
scaffold0249 (240-391)||(7517-7667)
scaffold0249 (400-456)||(7742-7798)
[»] scaffold0154 (1 HSPs)
scaffold0154 (50-239)||(30194-30383)
[»] scaffold0053 (2 HSPs)
scaffold0053 (90-347)||(81826-82082)
scaffold0053 (59-161)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (33-349)||(116052-116366)
scaffold0004 (46-234)||(129204-129393)
[»] scaffold0028 (2 HSPs)
scaffold0028 (46-374)||(65265-65592)
scaffold0028 (266-328)||(1274-1336)
[»] chr5 (20 HSPs)
chr5 (15-459)||(23527632-23528099)
chr5 (334-391)||(22232436-22232493)
chr5 (57-221)||(18408521-18408685)
chr5 (59-139)||(19236294-19236374)
chr5 (51-110)||(22439310-22439369)
chr5 (78-185)||(22460506-22460611)
chr5 (77-185)||(34829432-34829539)
chr5 (59-185)||(22467130-22467254)
chr5 (86-177)||(20781102-20781192)
chr5 (282-349)||(23112480-23112546)
chr5 (15-65)||(20819639-20819689)
chr5 (15-65)||(20826739-20826789)
chr5 (400-456)||(22232568-22232625)
chr5 (204-236)||(20819456-20819488)
chr5 (204-236)||(20826556-20826588)
chr5 (59-139)||(28889978-28890058)
chr5 (59-139)||(28896682-28896762)
chr5 (59-139)||(28909930-28910010)
chr5 (59-139)||(28931622-28931702)
chr5 (59-139)||(28946325-28946405)
[»] scaffold0461 (2 HSPs)
scaffold0461 (12-184)||(581-752)
scaffold0461 (100-184)||(7605-7688)
[»] scaffold0139 (1 HSPs)
scaffold0139 (11-349)||(15521-15856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (18-151)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (90-234)||(1117-1261)
[»] chr1 (15 HSPs)
chr1 (12-184)||(18712098-18712270)
chr1 (59-199)||(41111214-41111354)
chr1 (334-391)||(20941657-20941714)
chr1 (343-459)||(41110997-41111112)
chr1 (59-185)||(21710167-21710292)
chr1 (100-251)||(19961472-19961622)
chr1 (63-234)||(22030333-22030504)
chr1 (59-185)||(20851714-20851838)
chr1 (59-185)||(21705625-21705749)
chr1 (59-152)||(20858341-20858434)
chr1 (121-349)||(11157328-11157554)
chr1 (282-386)||(20438224-20438327)
chr1 (401-456)||(23631145-23631200)
chr1 (400-456)||(20941789-20941846)
chr1 (17-66)||(41111358-41111407)
[»] scaffold0124 (1 HSPs)
scaffold0124 (12-161)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (25-184)||(15475-15633)
scaffold0235 (25-161)||(23192-23328)
[»] scaffold1061 (1 HSPs)
scaffold1061 (121-328)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (90-349)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (18-135)||(6907-7024)
[»] scaffold0077 (3 HSPs)
scaffold0077 (21-149)||(4153-4281)
scaffold0077 (339-391)||(17972-18024)
scaffold0077 (339-391)||(23605-23657)
[»] scaffold0222 (1 HSPs)
scaffold0222 (57-221)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (59-185)||(4253-4377)
[»] scaffold0020 (1 HSPs)
scaffold0020 (49-349)||(102489-102787)
[»] scaffold0001 (3 HSPs)
scaffold0001 (343-460)||(174440-174557)
scaffold0001 (100-251)||(493650-493800)
scaffold0001 (90-234)||(525062-525205)
[»] scaffold0348 (2 HSPs)
scaffold0348 (334-391)||(1527-1584)
scaffold0348 (400-456)||(1659-1716)
[»] scaffold0476 (1 HSPs)
scaffold0476 (57-161)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (57-208)||(17492-17643)
[»] scaffold0261 (1 HSPs)
scaffold0261 (86-251)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (65-234)||(121200-121369)
scaffold0031 (65-234)||(132077-132246)
[»] scaffold0232 (1 HSPs)
scaffold0232 (127-234)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (68-251)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (12-135)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (121-226)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (100-251)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (50-185)||(3831-3966)
[»] scaffold0337 (1 HSPs)
scaffold0337 (282-386)||(9950-10053)
[»] scaffold0453 (1 HSPs)
scaffold0453 (122-251)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (100-161)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (190-234)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (282-349)||(1207-1273)
[»] scaffold0106 (2 HSPs)
scaffold0106 (394-456)||(46685-46748)
scaffold0106 (394-456)||(50958-51021)
[»] scaffold0023 (2 HSPs)
scaffold0023 (59-116)||(134867-134924)
scaffold0023 (121-185)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (18-66)||(1343-1391)
[»] scaffold0335 (1 HSPs)
scaffold0335 (190-234)||(3328-3372)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-66)||(49597-49645)


Alignment Details
Target: scaffold0026 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 121 - 460
Target Start/End: Original strand, 12534 - 12872
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 220  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  221 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 320  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12634 atatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgattgagtaagaaatcaagtg 12733  T
Q  321 aatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaa 420  Q
    ||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||     
T  12734 aatgtataa-ctattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaagtcatatgag 12832  T
Q  421 atatatgtgtagttaagttgtatgtagatatacacaggtt 460  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  12833 atatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 12437 - 12543
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctca-----------agcgaaccctaagcgagcagaacccagaccttctgtaagccggtc 103  Q
    ||||||||||||||||| |||||||||||| |||||||||||||           |||||||| ||||||||| |||||||||||| |||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  104 gcttaag 110  Q
    |||||||    
T  12537 gcttaag 12543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 50 - 460
Target Start/End: Complemental strand, 3156 - 2747
Alignment:
Q  50 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 149  Q
    ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3156 gttcgctcaagcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 3057  T
Q  150 cctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatccta 249  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |    
T  3056 cctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatccca 2957  T
Q  250 ctagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||    
T  2956 ctagaacaagccggtgatcgaattggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatg 2858  T
Q  350 tatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtaga 448  Q
    |||| |||||||||||| ||||||| |||||||||||||||| | | || |||||||||||||||||||||| ||||||  ||||| |||||||||||||    
T  2857 tatgcgcataattataaataattgtctatgttctggattgtttg-agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtaga 2759  T
Q  449 tatacacaggtt 460  Q
    ||||||||||||    
T  2758 tatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 26583313 - 26582856
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 106  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  107 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 206  Q
    |||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  207 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 306  Q
    ||| ||||||| |||||||||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| ||||||| ||| || ||||||||||||    
T  26583113 ttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttggagatgattgag 26583014  T
Q  307 tatgaaatcaagtgaatat----ataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 402  Q
    ||||||||| |||||||||    ||||  | | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | | || |||    
T  26583013 tatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgtttg-agttgcgg 26582915  T
Q  403 agtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    ||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  26582914 agtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 460
Target Start/End: Original strand, 23168954 - 23169294
Alignment:
Q  122 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 220  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  221 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 320  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  321 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 418  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23169153 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23169251  T
Q  419 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23169252 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 460
Target Start/End: Original strand, 23580211 - 23580551
Alignment:
Q  122 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 220  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  221 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 320  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  321 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 418  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23580410 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23580508  T
Q  419 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23580509 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 23089594 - 23089779
Alignment:
Q  49 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 148  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  23089594 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 23089693  T
Q  149 gcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    ||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23089694 gccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 349
Target Start/End: Complemental strand, 23063127 - 23062869
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 188  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  189 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtg 287  Q
    |||||||||  |||||||||| || |||||||||||||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  ||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtg 23062930  T
Q  288 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    || ||| ||||||||||||||||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062929 aa-tttggagatgattgagtatgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 23101994 - 23102207
Alignment:
Q  21 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 120  Q
    |||||||||||  ||||||||||  |  |||||||| ||||||||| |||||||||||||||||||| | |||||||||| || |||||| |||||        
T  23101994 agcgaaaaaccaatttgattctgccaagagttcgcttaagcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggac 23102093  T
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttg 219  Q
    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||    
T  23102094 gtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttg 23102192  T
Q  220 tataacccttgtata 234  Q
    |||||||||| ||||    
T  23102193 tataacccttatata 23102207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 23878425 - 23878325
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 155  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||    
T  23878425 caagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactt 23878327  T
Q  156 tt 157  Q
    ||    
T  23878326 tt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 21907865 - 21907750
Alignment:
Q  46 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagcctta 144  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||    
T  21907865 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-cctta 21907767  T
Q  145 gtcagcctctttttgaa 161  Q
    ||||||| |||||||||    
T  21907766 gtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 26884639 - 26884489
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 198  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  199 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 251  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 24661021 - 24660876
Alignment:
Q  89 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 187  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| |||||||||||||  |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaatttta-cttcgtgcactaggggatcct 24660923  T
Q  188 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
     ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 29281470 - 29281368
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  29281470 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttct 29281371  T
Q  159 gaa 161  Q
    |||    
T  29281370 gaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 25181501 - 25181606
Alignment:
Q  78 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 177  Q
    |||||||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | |||||||||||||    
T  25181501 gaacccagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcac 25181598  T
Q  178 gaggggac 185  Q
     |||||||    
T  25181599 taggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 23264613 - 23264515
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 110  Q
    ||||| || ||||||||| | |||| ||| ||| ||||||||||||||||||||| | |||||||  ||||| |||  |||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcgagcgaaaccccgactctctgtaagccggtcgcttaag 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 10050 - 9957
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10050 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 349
Target Start/End: Complemental strand, 23264524 - 23264301
Alignment:
Q  121 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 218  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  219 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 318  Q
    |||||||| || ||||     |  |||||||| | ||||   |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| ||||    
T  23264426 gtataacctttatataca---ctaaatcctaccaaaacact-tggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaag 23264332  T
Q  319 tgaatatataatttattgaatgaaattgatg 349  Q
    |||| ||||| | | ||||||||| ||||||    
T  23264331 tgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  89 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 161  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  89 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 161  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 29614738 - 29615195
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 106  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  107 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 206  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  207 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 306  Q
    ||||||||||| |||||||||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| ||||||| ||| || ||||||||||||    
T  29614935 ttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagatgattgag 29615034  T
Q  307 tatgaaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 398  Q
    ||||||| |||||||        ||||||||  | | |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||   | ||    
T  29615035 tatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gagtt 29615132  T
Q  399 tcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
     ||||| |||||||||||||||| ||||||  ||||  |||||||||||||||||||||||||    
T  29615133 gcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 46 - 375
Target Start/End: Complemental strand, 25396671 - 25396343
Alignment:
Q  46 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 145  Q
    |||||||| || ||||||||| | ||||||| ||||||  ||  |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||    
T  25396671 agaagttcacttaagcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttag 25396572  T
Q  146 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaa 244  Q
    ||| || ||||||||||| | |||| |||||| |||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | |||    
T  25396571 tcaaccactttttgaattat-gcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaa 25396474  T
Q  245 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 344  Q
    |||||||  ||||   |||| ||||||||||||||  |||||||||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |    
T  25396473 tcctactgaaacacattggtaatcgaattggttgaatttagtgaattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaact 25396374  T
Q  345 tgatgtatgtgcataattataattaattgtg 375  Q
    ||||| ||  | || ||||| ||||||||||    
T  25396373 tgatgcattagtatgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 18799932 - 18799754
Alignment:
Q  51 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 150  Q
    |||||| ||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||    
T  18799932 ttcgcttaagcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagc 18799833  T
Q  151 ctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 229  Q
    | |||||||||  ||||| || ||||  |||||| | | || ||||||| || ||||| | || ||||||||||||||||    
T  18799832 cactttttgaa-ctttgcctcatgcattaggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 21565751 - 21565936
Alignment:
Q  49 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 148  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  21565751 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 21565850  T
Q  149 gcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    ||| |||||||||   |||| |||||||  ||| || | | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  21565851 gccactttttgaa-cgttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 199  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 199  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 343 - 459
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| |||||  ||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 19877870 - 19877730
Alignment:
Q  59 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 157  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  19877870 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 19877772  T
Q  158 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 199  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19877771 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 199  Q
    |||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 251
Target Start/End: Original strand, 19300308 - 19300509
Alignment:
Q  49 agttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtc 147  Q
    ||||||||| |||||||| | ||||||| |||| ||| || | ||||| || ||||||||||| || ||| |  ||||||||||||  ||||||||||||    
T  19300308 agttcgctcgagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtc 19300406  T
Q  148 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatc 246  Q
    ||||||| | ||||  |||||||||||||| |||||| | | ||||| ||| | || |||||| |||| ||||||||||||||||||||| |||| ||||    
T  19300407 agcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtatttttaagtgtttcttttagcttgtataacccttgtataggcatca-aatc 19300504  T
Q  247 ctact 251  Q
    |||||    
T  19300505 ctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 19786529 - 19786650
Alignment:
Q  78 gaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 176  Q
    ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  ||||    
T  19786529 gaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgca 19786627  T
Q  177 cgaggggacttcttgagcattct 199  Q
     ||||||||||||||||| ||||    
T  19786628 tgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 226
Target Start/End: Original strand, 19471914 - 19472082
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 156  Q
    ||||||| || | ||||||| ||||||  || |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||    
T  19471914 caagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccacttt 19472012  T
Q  157 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 226  Q
    ||||||||| ||||||||||| |||||| | | ||||||||| | |||||||||||| |||||||||||||    
T  19472013 ttgaatttt-gcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 24513370 - 24513465
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 110  Q
    ||||| ||||||||| | |||| |||||   ||||||||||||||||||||| | ||||||| ||||||| || |||||| |||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaag 24513465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 20008529 - 20008622
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008529 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 25470290 - 25470448
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 161  Q
    |||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 21365067 - 21365200
Alignment:
Q  17 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 105  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  106 ttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||| | |||||||||||||| ||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 23969049 - 23969182
Alignment:
Q  17 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 105  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  106 ttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||| | |||||||||||||| ||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 19786455 - 19786506
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 19877923 - 19877874
Alignment:
Q  17 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19877874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  121 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 184  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 59 - 459
Target Start/End: Original strand, 41455741 - 41456142
Alignment:
Q  59 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 157  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| |||     
T  41455741 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttc 41455840  T
Q  158 tgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaaca 257  Q
    |||| | |||||| ||||| ||||||||||| ||||| ||||  ||  |   ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  41455841 tgaactgttgcttagtgcatgaggggacttcctgagcgttctttaacttcctctttaacttgtataatcctagtataggtatcagaatcctactagaaca 41455940  T
Q  258 agctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgc 356  Q
    ||||||  ||||||||| ||| ||||||| ||| || ||||| |||||||| ||| || ||||||||||| ||  |||||||||||||||||||| | ||    
T  41455941 agctggcaatcgaattgattggtgttagtaaatgttggagataattgagtaggaagattaagtgaatatacaa-ctattgaatgaaattgatgtaagcgc 41456039  T
Q  357 ataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatg-tgtagttaagttgtatgtagatatacac 455  Q
    |||||||||| |||||||| |||||||| |||||| | | || |||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||    
T  41456040 ataattataaataattgtgaatgttctgaattgtttg-agttacggagtagtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacac 41456138  T
Q  456 aggt 459  Q
    ||||    
T  41456139 aggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 57 - 456
Target Start/End: Complemental strand, 18914590 - 18914193
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 155  Q
    |||||||||| | ||||||| ||||||  ||  ||| ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| |||    
T  18914590 caagcgaacctttagcgagcggaaccccaactctctataagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccactt 18914492  T
Q  156 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactaga 254  Q
    || |||||||||| |||||||  |||||| | | ||||||||   | ||| |||| |  ||||||||||||| || ||||   | || |||||||||| |    
T  18914491 tt-gaatttttgcctcgtgcattaggggatccttttgagcatataataatatttcttccaacttgtataacctttatatataca-cataatcctactaaa 18914394  T
Q  255 acaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgt 354  Q
    |||  ||  |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||     
T  18914393 acactctattgatggaattagttgatgttagtgaattttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatga 18914294  T
Q  355 gcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatataca 454  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| |||||| | |||||||||||||||||||||||    
T  18914293 gcataattataattaattgtgtatgttctggattgttggaa-ttgcggagttgtaagtcatatgaaacatatgtattgttaagttgtatgtagatataca 18914195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 55499658 - 55499798
Alignment:
Q  21 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 120  Q
    |||||||||||  ||||||||||  |  ||||||||||| |||||| ||||||||||||||| |||| | |||||||||||||||||||| ||||||       
T  55499658 agcgaaaaaccaatttgattctgccaagagttcgctcaaacgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagac 55499757  T
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 161  Q
    ||||||||||||||||    ||||||||||| |||||||||    
T  55499758 gtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 16802029 - 16802139
Alignment:
Q  51 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 150  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||    
T  16802029 ttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagc 16802128  T
Q  151 ctctttttgaa 161  Q
    | |||||||||    
T  16802129 cactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 70 - 252
Target Start/End: Original strand, 13324381 - 13324562
Alignment:
Q  70 agcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgct 169  Q
    |||||||| |||||| || ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| |||||||    
T  13324381 agcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgct 13324479  T
Q  170 tcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 252  Q
    |||||||  |||||| | | |||||||||| || ||||||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324480 tcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcag-----------aacccagaccttctgtaagccggtcgct 106  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||| | |           ||||||||| | ||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  107 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 151  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  334 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 219  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  220 tataacccttgtataggtatcagaatcctacta 252  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 219  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  220 tataacccttgtataggtatcagaatcctacta 252  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  338 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 14865319 - 14865216
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctg-tcgcttaagcgaagtgagccttagtcagcctctttt 157  Q
    ||||| || ||||||| | |||||||||||| || ||||| ||||||||||| |||||| | | ||||||||||||| ||||  ||||||||||| |||     
T  14865319 agcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttc 14865220  T
Q  158 tgaa 161  Q
    ||||    
T  14865219 tgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10390034 - 10390083
Alignment:
Q  16 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 65  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10390083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10415123 - 10415172
Alignment:
Q  16 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 65  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10415172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10421793 - 10421842
Alignment:
Q  16 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 65  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10421842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 12034007 - 12034072
Alignment:
Q  51 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 116  Q
    |||||| |||||| || ||||||| |  ||||||||||| |||||||| ||||||||||| |||||    
T  12034007 ttcgcttaagcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 18136249 - 18136306
Alignment:
Q  400 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 456  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  18136249 cggagttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 9533335 - 9533232
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 381  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  9533335 ttagtgaatttg-gagatgattgagtatgaaactaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 9533237  T
Q  382 ctgga 386  Q
    |||||    
T  9533236 ctgga 9533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 18129736 - 18129792
Alignment:
Q  401 ggagtagtaagtcatatgaaata-tatgtgtagttaagttgtatgtagatatacaca 456  Q
    ||||| ||||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  18129736 ggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 121 - 460
Target Start/End: Complemental strand, 111284 - 110939
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 220  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  221 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 320  Q
    |||||||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |||||||| ||||||    
T  111185 ataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtgtatgaaaacaagtg 111086  T
Q  321 a--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagt 412  Q
    |        ||||||||  | | |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||| | || || | ||||||||||||    
T  111085 aatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattg-tcgagttgt-ggagtagtaagt 110988  T
Q  413 catatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  110987 catatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 91783 - 91881
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 157  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  91783 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 97509 - 97607
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 157  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  97509 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 111378 - 111330
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 407 - 241
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 220  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  221 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 288  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  308 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 7552 - 7386
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 220  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  221 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 288  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7453 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 504 - 409
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 99  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 7649 - 7554
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 99  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 13123506 - 13123967
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 106  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  107 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 206  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 13123704  T
Q  207 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 306  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |    
T  13123705 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtg 13123804  T
Q  307 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 396  Q
    |||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || |    
T  13123805 tatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagt 13123903  T
Q  397 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13123904 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 324
Target Start/End: Complemental strand, 13743121 - 13742860
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||||| |||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||   || |    
T  13743121 agcgacccgtaagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttct 13743025  T
Q  159 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 258  Q
    ||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | |||||||| |||||| |    
T  13743024 gaacttttgtttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaacga 13742925  T
Q  259 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata 324  Q
    || |  ||| | |||  ||| ||||||| ||| || ||| |||||| |||||||| ||||||||||    
T  13742924 gccgaggattggattaattggtgttagt-aatgttggaggtgattgtgtatgaaaacaagtgaata 13742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 68 - 460
Target Start/End: Original strand, 12710496 - 12710896
Alignment:
Q  68 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 167  Q
    ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | ||     
T  12710496 taagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactatta 12710594  T
Q  168 cttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgat 267  Q
    ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || ||||||  |||| |||| || ||||||| ||||||    
T  12710595 cttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgat 12710694  T
Q  268 cgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgca 357  Q
     | |||| ||| | ||||| ||| || | | |||||| ||||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||    
T  12710695 tggattgattggtattagtaaatgttggtgttgattgtgtatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgca 12710794  T
Q  358 taattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacaca 456  Q
    ||||||||| ||||||||||||||||| |||| | || || | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  12710795 taattataaataattgtgtatgttctgaattg-tcgagttat-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacaca 12710892  T
Q  457 ggtt 460  Q
    ||||    
T  12710893 ggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 16676845 - 16676623
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 16676746  T
Q  112 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 210  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  16676745 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 16676647  T
Q  211 tttaacttgtataacccttgtata 234  Q
    || |||||||||||||||| ||||    
T  16676646 ttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 17651081 - 17650859
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 17650982  T
Q  112 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 210  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  17650981 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 17650883  T
Q  211 tttaacttgtataacccttgtata 234  Q
    || |||||||||||||||| ||||    
T  17650882 ttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 343 - 460
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  ||||  ||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  442 atgtagatatacacaggtt 460  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 199  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 90 - 328
Target Start/End: Complemental strand, 46625403 - 46625166
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 188  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  189 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 288  Q
    ||||||||| ||||||||||| || ||||||||| ||||| ||||| | | |  |||||||||  ||||   |||| || |||||||||||   ||||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccctggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtga 46625206  T
Q  289 atttttgagatgattgagtatgaaatcaagtgaatatata 328  Q
    |||||  | |||||||||||||||| ||| ||||||||||    
T  46625205 attttgaatatgattgagtatgaaaccaaatgaatatata 46625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 90 - 349
Target Start/End: Complemental strand, 13678906 - 13678649
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 187  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  188 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 287  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 13678710  T
Q  288 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  13678709 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 11389910 - 11390020
Alignment:
Q  51 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcag 149  Q
    |||||||||||||||| ||||||||| |||||||||| | |||| || |||||||||||| || ||| | ||||||||||||||| ||| ||||||||||    
T  11389910 ttcgctcaagcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcag 11390008  T
Q  150 cctctttttgaa 161  Q
    || |||||||||    
T  11390009 ccactttttgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 20311631 - 20311709
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 135  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||||||||||| || ||| | |||||||||||||||    
T  20311631 caagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 150  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  69 aagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 167  Q
    |||||||| |||||||||| | |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  168 cttcgtgcacgagggga 184  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 16090559 - 16090457
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16090559 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16090460  T
Q  159 gaa 161  Q
    |||    
T  16090459 gaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  89 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 161  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 386
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  295 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 386  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 21231554 - 21231643
Alignment:
Q  46 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 135  Q
    ||||||||||||||||||||| | ||||||| ||||||  || |||||| ||| |||||||||||  ||||    |||||||||||||||    
T  21231554 agaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaag 21231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 147556 - 147453
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 381  Q
    |||||||||||  ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  147556 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 147458  T
Q  382 ctgga 386  Q
    |||||    
T  147457 ctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 2464838 - 2464758
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  2464838 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 2464758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 3858007 - 3858087
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  3858007 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 3857953 - 3858003
Alignment:
Q  17 tgtgagcgaaaaaccgtttt-gattctgttagaagttcgctcaagcgaacc 66  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaacc 3858003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  332 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 386  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 29181690 - 29181780
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 149  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||| || ||||  ||||||||    
T  29181690 agcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcaaactgagtgttagtcag 29181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 2966431 - 2966383
Alignment:
Q  68 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 116  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  2966431 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 12710435 - 12710483
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    |||||| ||||||| ||||||||||||   |||||||||||||||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 12710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  347 atgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 20907038 - 20907086
Alignment:
Q  68 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 116  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  20907038 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 8046420 - 8046893
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtc 103  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| || ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  104 gcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 203  Q
    ||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattctataa 8046619  T
Q  204 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 303  Q
      |   |||||||| |||||||||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| ||||||| ||| || |||||||||    
T  8046620 cttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgatt 8046719  T
Q  304 gagtatgaaatcaagtgaatatata-attta-----------------ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 385  Q
    | |||||||| |||||||||||||| || ||                 | |||||  |||||||| ||||||||||||||| |||||||||||| | |||    
T  8046720 gtgtatgaaaacaagtgaatatatatatatatatatatatataacatgtggaatgtgattgatgtgtgtgcataattataaataattgtgtatgatttgg 8046819  T
Q  386 attgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    |||  | || || | ||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  8046820 attact-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| ||||| |||| |||||| |||||||||||||||     
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacctagactttctgtgagccggtcgcttaagc 15407509  T
Q  112 gaactatctgtcgcttaagcgaag 135  Q
    |||||  | |||||||||||||||    
T  15407508 gaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 14486154 - 14486052
Alignment:
Q  49 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 148  Q
    |||||||||||||||||| | ||||||| ||||||| ||  ||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||    
T  14486154 agttcgctcaagcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtca 14486055  T
Q  149 gcc 151  Q
    |||    
T  14486054 gcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  334 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 240
Target Start/End: Complemental strand, 11847537 - 11847397
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 198  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||| | | ||||| |||     
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggacccttttgagtattt 11847439  T
Q  199 taaaatgtttcctttaacttgtataacccttgtataggtatc 240  Q
      || |||||| | || |||||||||| ||||||||||||||    
T  11847438 gtaagtgtttcttctagcttgtataactcttgtataggtatc 11847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  189 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 252  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    |||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 16147412 - 16147514
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16147412 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16147511  T
Q  159 gaa 161  Q
    |||    
T  16147512 gaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 8834297 - 8834185
Alignment:
Q  122 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 220  Q
    ||||||||||||||   | ||||||||||| |||||||| |||||||||| ||||| || | | | | |||||| |||||||||||||| || |||||||    
T  8834297 tcgcttaagcgaagaaggtcttagtcagccactttttga-tttttgcttcatgcactagagaatccttttgagcgttctaaaatgtttctttcaacttgt 8834199  T
Q  221 ataacccttgtata 234  Q
    |||||| |||||||    
T  8834198 ataacctttgtata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 27905729 - 27905613
Alignment:
Q  68 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 167  Q
    |||||||||| |||||  ||||| ||| ||| | ||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  27905729 taagcgagcaaaaccccaaccttttgtgagctgatcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 27905631  T
Q  168 cttcgtgcacgaggggac 185  Q
    |||||||||  |||||||    
T  27905630 cttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 182  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 18212623 - 18212523
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 381  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 18212525  T
Q  382 ct 383  Q
    ||    
T  18212524 ct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 13887258 - 13887086
Alignment:
Q  60 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 159  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13887258 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13887160  T
Q  160 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgta 232  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887159 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 13888115 - 13887943
Alignment:
Q  60 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 159  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13888115 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13888017  T
Q  160 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgta 232  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13888016 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 15307563 - 15307415
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 188  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| |||| | | |     
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactagggaatcctt 15307464  T
Q  189 ttgagcattctaaaatgtttccttt---aacttgtataacccttgtata 234  Q
    | ||||||| ||||||||||  |||   ||||||||||||| |||||||    
T  15307463 tcgagcattttaaaatgttttttttttcaacttgtataacctttgtata 15307415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 9167 - 9628
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 106  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  107 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 206  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||  ||  |    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattctgtaactt 9365  T
Q  207 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 306  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||  | |||| |||   ||||| ||| || | | |||||| |    
T  9366 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgactggattgattggcattagtaaatgttggtgttgattgtg 9465  T
Q  307 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 396  Q
    |||||||  |||||||||  |||| || |||       ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||| | || |    
T  9466 tatgaaaataagtgaatacgtatatatgtataacatgatgaatgtgattgatgtatgtgcatgattataaataattgtatatgttctggattg-tcgagt 9564  T
Q  397 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 460  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  9565 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 59 - 460
Target Start/End: Complemental strand, 23866026 - 23865615
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |    
T  23866026 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttct 23865927  T
Q  159 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 258  Q
    ||| | || ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| ||||||||    
T  23865926 gaactattacttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaa 23865827  T
Q  259 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata----------tataatttattgaatgaaattgat 348  Q
    || |||||| | |||| ||| | ||||| ||| || |   |||||| ||||| ||  |||||||||          |||||  |   |||||  ||||||    
T  23865826 gccggtgattggattgattggtattagtaaatgttggtattgattgtgtatgtaaataagtgaatacgtgtatatgtataacatgaggaatgtgattgat 23865727  T
Q  349 gtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtc-atatgaaatatatg-tgtagttaagttgtatgta 446  Q
    |||||||||||||||||| ||||||||||||||||| ||||||   | || |||||||||||||| ||||||||||||||   ||||| |||||||||||    
T  23865726 gtatgtgcataattataaataattgtgtatgttctgaattgtt--gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttgtatgta 23865629  T
Q  447 gatatacacaggtt 460  Q
    ||||||||||||||    
T  23865628 gatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  442 atgtagatatacacaggtt 460  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| ||||| |||||||| |||||||||||  | ||||||||||||||||||| | ||||||| |||||||||| |||||| |||||||||||||||     
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagc 14057247  T
Q  112 gaactatctgtcgcttaagcgaag 135  Q
    || ||| | |||||||||||||||    
T  14057248 gagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| |||||||||| |||||| || ||||||||||||     
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagtcggtcgcttaagc 25111409  T
Q  112 gaactatctgtcgcttaagcgaag 135  Q
    |||||  | |||||||||||||||    
T  25111408 gaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  334 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 389  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 349
Target Start/End: Complemental strand, 18613697 - 18613409
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 155  Q
    |||||||||| | ||||||| ||||||  ||  ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |    
T  18613697 caagcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-t 18613600  T
Q  156 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactaga 254  Q
    ||||||  ||||| |||||||| |||||| | |||||||||||  |||||||| | || ||||||||||||| || ||||   | | |||||||||| ||    
T  18613599 tttgaa-ctttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-ga 18613503  T
Q  255 acaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    |  |  |||| |||||||| |||||  |||||||| ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613502 aacacttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 24321252 - 24321376
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  24321252 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 24321350  T
Q  159 gaatttttgcttcgtgcacgaggggac 185  Q
    ||| | ||||||||| ||| |||||||    
T  24321351 gaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 21931187 - 21931018
Alignment:
Q  65 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatt 163  Q
    |||| |||||||||||| |  ||  |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  |    
T  21931187 cccttagcgagcagaacaccaactctctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--t 21931090  T
Q  164 tttgcttcgtgcacgagggga--cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    |||||||| | ||| |||| |  | ||| ||||||||||||||||||| || ||||||||||||| |||||||    
T  21931089 tttgcttcctccactagggaatccatct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 17054060 - 17054009
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 17054009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  335 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 385  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 20005563 - 20005612
Alignment:
Q  407 gtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 456  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20005563 gtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 459
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  368 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 459  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 23866078 - 23866030
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    |||| ||||||||| ||||||||||||   |||||||||||||||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 23866030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 59 - 328
Target Start/End: Complemental strand, 592 - 324
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |    
T  592 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttct 494  T
Q  159 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 258  Q
    ||| | || ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| | |||||||| ||||||||    
T  493 gaactattacttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaa 394  T
Q  259 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 328  Q
    ||  ||||| | |||| ||| ||||||| ||| || |||||||| | |||||||| ||||||||||||||    
T  393 gccagtgattggattgattggtgttagtaaatgttggagatgatggtgtatgaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 343 - 460
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||| ||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  442 atgtagatatacacaggtt 460  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 10829 - 10610
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaa 114  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||     
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccctaagcgagcagaacccagacttactgtaagccggtcgcttaagcgag 10730  T
Q  115 ctatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttg-agcattctaaaatgtttccttt 213  Q
    ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||| ||||||  || ||||  | |||    
T  10729 ctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcccttgtagcatttaaacatgtccctttt 10631  T
Q  214 aacttgtataacccttgtata 234  Q
    |||||||||||||||| ||||    
T  10630 aacttgtataacccttatata 10610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 7517 - 7667
Alignment:
Q  240 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 339  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  340 gaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  7616 gaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  400 cggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 456  Q
    |||||| | ||||||||||||| |||||  | |||||||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 30383 - 30194
Alignment:
Q  50 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 149  Q
    |||| |||||||||||| | |||||||  |||| | || |||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||    
T  30383 gttcactcaagcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcag 30284  T
Q  150 cctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtat 239  Q
    || |||| |||||||| ||||||||||| |||||||  | ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30283 ccactttctgaatttt-gcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 90 - 347
Target Start/End: Original strand, 81826 - 82082
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 188  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  189 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 288  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtga 82023  T
Q  289 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattga 347  Q
    ||||| || ||| |||||||||||| |||||||||||||| | | ||||||||| ||||    
T  82024 attttggatatgtttgagtatgaaaccaagtgaatatatattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 80072 - 80174
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  80072 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 80171  T
Q  159 gaa 161  Q
    |||    
T  80172 gaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 33 - 349
Target Start/End: Complemental strand, 116366 - 116052
Alignment:
Q  33 ttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg 132  Q
    |||| ||||||| ||||||||||||||||||||| | |||||||  || ||  ||  ||||||||||||||||||||| |||| | | ||||||||||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcgagcgaaatcccaactctctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcg 116267  T
Q  133 aag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttg 230  Q
    ||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | | ||||| ||| ||||||||||| || ||| ||||||||| ||     
T  116266 aagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatccttttgagtattttaaaatgtttctttcaacctgtataaccttta 116169  T
Q  231 tataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataat 330  Q
    ||||   | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  116168 tatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtgaa-ttttgagatgattgagtatgaaatcaagtgaacatatact 116071  T
Q  331 ttattgaatgaaattgatg 349  Q
     | ||||||||| ||||||    
T  116070 atgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 129204 - 129393
Alignment:
Q  46 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 145  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||| ||||||||||||||| || | | | |||||||||||||||   | |||||    
T  129204 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttag 129303  T
Q  146 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    |||||| ||||||||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| ||||||||||||| |||||||    
T  129304 tcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 46 - 374
Target Start/End: Complemental strand, 65592 - 65265
Alignment:
Q  46 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 145  Q
    ||||||||||| || |||||| | ||||||| ||||||  ||  ||||||||||||||||||||| |||| | | ||| |||||||| ||    ||||||    
T  65592 agaagttcgcttaaccgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttag 65493  T
Q  146 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaa 244  Q
    |||||| ||||||||| |||||| |||||||| |||||| | | |||| |||| ||||||||||| || ||||||||||||  || |||| | | | |||    
T  65492 tcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaa 65395  T
Q  245 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 344  Q
    |||||||| ||||   |||| |||||||||||| |  |||||||||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |    
T  65394 tcctactaaaacacattggtaatcgaattggttaagtttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaact 65295  T
Q  345 tgatgtatgtgcataattataattaattgt 374  Q
    ||||| ||  | || ||||| |||||||||    
T  65294 tgatgcattagtatgattattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 1336 - 1274
Alignment:
Q  266 atcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 328  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| |||||    
T  1336 atcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatata 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 23528099 - 23527632
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 102  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  103 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaa 202  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||  |    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttcttta 23527901  T
Q  203 atgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgttagtgaatttttgagatga 301  Q
    |  |   |||||||| |||||||||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| ||||||| ||| || ||||||     
T  23527900 acttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagatgt 23527801  T
Q  302 ttgagtatgaaatcaagtga------------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 389  Q
    ||| || ||||| |||||||            ||||||||  | | |||||  |||||||||||||||||||||||| |||||||||  | ||||||||     
T  23527800 ttgggtgtgaaagcaagtgaatatgtatgtatatatataacatgtggaatgtgattgatgtatgtgcataattataaataattgtgtcag-tctggatta 23527702  T
Q  390 ttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 459  Q
    || || || | ||||||||||||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  23527701 tttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  334 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 18408521 - 18408685
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctt 155  Q
    |||||||||| | ||||||| ||||||  || ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||    
T  18408521 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactt 18408619  T
Q  156 tttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgta 221  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  18408620 tttgaa-ctttgcctcgtgcactaggggattcttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 19236374 - 19236294
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236374 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 22439310 - 22439369
Alignment:
Q  51 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 110  Q
    |||||| ||| ||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  22439310 ttcgcttaagtgaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaag 22439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 22460611 - 22460506
Alignment:
Q  78 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 177  Q
    |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| |||    
T  22460611 gaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacac 22460514  T
Q  178 gaggggac 185  Q
     |||||||    
T  22460513 taggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 34829539 - 34829432
Alignment:
Q  77 agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 176  Q
    |||||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||    
T  34829539 agaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgca 34829441  T
Q  177 cgaggggac 185  Q
    | |||||||    
T  34829440 ctaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 22467254 - 22467130
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||| ||||| |||||| | |||||||||||| | ||||  |||| |||||| ||| |    
T  22467254 agcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagcct-tttct 22467156  T
Q  159 gaatttttgcttcgtgcacgaggggac 185  Q
    ||| | ||||||||| ||| |||||||    
T  22467155 gaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  86 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 177  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 20819689 - 20819639
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 65  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20819639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 20826789 - 20826739
Alignment:
Q  15 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 65  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20826739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 22232568 - 22232625
Alignment:
Q  400 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 456  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  22232568 cggagtcgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 20819488 - 20819456
Alignment:
Q  204 tgtttcctttaacttgtataacccttgtatagg 236  Q
    ||||||||||| |||||||||||||||||||||    
T  20819488 tgtttcctttagcttgtataacccttgtatagg 20819456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 20826588 - 20826556
Alignment:
Q  204 tgtttcctttaacttgtataacccttgtatagg 236  Q
    ||||||||||| |||||||||||||||||||||    
T  20826588 tgtttcctttagcttgtataacccttgtatagg 20826556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28889978 - 28890058
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28889978 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28896682 - 28896762
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28896682 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28909930 - 28910010
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28909930 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28931622 - 28931702
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28931622 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28946325 - 28946405
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 139  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28946325 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 581 - 752
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | |||||||  |||||  || ||||||||||||||||||||||     
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcgaaaccccaactttctgtaagccggtcgcttaagc 680  T
Q  112 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 184  Q
    |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  681 gaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 184  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 15521 - 15856
Alignment:
Q  11 agaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 110  Q
    |||||| || ||||||||| | |||  ||| ||| ||||||||||||||||||||| | ||||| |  |||||| ||  ||| |||| ||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaacgaaacccaaactctctataagacggtcgcttaag 15620  T
Q  111 tgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 208  Q
     |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||  |||||||||    
T  15621 cgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatttaaaaatgttt 15717  T
Q  209 cctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 308  Q
    | || ||||||||||||| || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  |||||||| ||| ||||||||||||||    
T  15718 ctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagta 15815  T
Q  309 tgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    ||||| |||||||| ||||| | | ||||||||| ||||||    
T  15816 tgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 106  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||| | ||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  107 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 151  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 1261 - 1117
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 188  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  189 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 18712270 - 18712098
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||  || |||||||||| |||||||||||     
T  18712270 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgcttaagcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagc 18712171  T
Q  112 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 184  Q
    |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712170 gaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 41111354 - 41111214
Alignment:
Q  59 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 157  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  41111354 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 41111256  T
Q  158 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 199  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  41111255 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  334 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  442 atgtagatatacacaggt 459  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 21710292 - 21710167
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    |||||||| ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||      
T  21710292 agcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttcc 21710193  T
Q  159 gaatttttgcttcgtgcacgaggggac 185  Q
    ||| | ||||||||| ||| |||||||    
T  21710192 gaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 19961622 - 19961472
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 198  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  199 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 251  Q
    | |  |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 22030333 - 22030504
Alignment:
Q  63 aaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaat 162  Q
    |||||| |||||||||||| |  ||  |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||    
T  22030333 aacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aat 22030431  T
Q  163 ttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    ||||||||| ||||| |||  | | | |||||||||||| |||||||| || ||||||||||||| |||||||    
T  22030432 ttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacctttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 20851714 - 20851838
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  20851714 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 20851812  T
Q  159 gaatttttgcttcgtgcacgaggggac 185  Q
    ||| | ||||||||| ||| |||||||    
T  20851813 gaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 21705749 - 21705625
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  21705749 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 21705651  T
Q  159 gaatttttgcttcgtgcacgaggggac 185  Q
    ||| | ||||||||| ||| |||||||    
T  21705650 gaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 20858341 - 20858434
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 152  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858341 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 349
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  121 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 218  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  219 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 318  Q
    ||||||||||| ||||   | |  |||||||||  ||||   |||| |||||||| || ||  |||||||| |||  |||||||||||||||||| ||||    
T  11157456 gtataacccttatatataca-ctaaatcctactgaaacactttggtaatcgaattagtcgagtttagtgaa-tttgaagatgattgagtatgaaaccaag 11157359  T
Q  319 tgaatatataatttattgaatgaaattgatg 349  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 20438224 - 20438327
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 381  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 20438322  T
Q  382 ctgga 386  Q
    |||||    
T  20438323 ctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 456
Target Start/End: Complemental strand, 23631200 - 23631145
Alignment:
Q  401 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 456  Q
    ||||| ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  23631200 ggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 20941789 - 20941846
Alignment:
Q  400 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 456  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  20941789 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 41111407 - 41111358
Alignment:
Q  17 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 41111358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 34861 - 35010
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | ||||||| |||||   || ||||||||||||||||||||||     
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagc 34960  T
Q  112 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 161  Q
    |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34961 gaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 15475 - 15633
Alignment:
Q  25 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 124  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||| ||||||  || |||||| |||| ||||||||||||| ||| |  |||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcg 15574  T
Q  125 cttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 184  Q
    ||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15575 cttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 23192 - 23328
Alignment:
Q  25 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 124  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||  ||||||  || |||||| ||||||| || |||| || ||| | ||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcg 23291  T
Q  125 cttaagcgaag-tgagccttagtcagcctctttttgaa 161  Q
    ||||||||||| ||| |||||||||||| |||||||||    
T  23292 cttaagcgaagatga-ccttagtcagccactttttgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 121 - 328
Target Start/End: Complemental strand, 1813 - 1607
Alignment:
Q  121 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 218  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  219 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 318  Q
    |||| ||| || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | ||||||||||| ||||    
T  1715 gtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaaccaag 1617  T
Q  319 tgaatatata 328  Q
    ||||||||||    
T  1616 tgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 90 - 349
Target Start/End: Complemental strand, 799 - 542
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 187  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  188 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 287  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 603  T
Q  288 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  602 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 7024 - 6907
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaacta 117  Q
    ||||||||  |||| |||||||||||  || | || ||||||||||| | |||||||||||||||||||| | |||||||||||||||||||| || |||    
T  7024 gtgagcgaggaacctttttgattctgccaggaatttgctcaagcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagcta 6925  T
Q  118 tctgtcgcttaagcgaag 135  Q
     | |||||||||||||||    
T  6924 gccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 4153 - 4281
Alignment:
Q  21 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 120  Q
    |||||||||||  ||||||||||  |  |||||||||||||||||| ||| |||||||||||||||| | |||||||| | ||||||||| ||||||       
T  4153 agcgaaaaaccaatttgattctgccaagagttcgctcaagcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagac 4252  T
Q  121 gtcgcttaagcgaagtgagccttagtcag 149  Q
    ||||||||||||||||   ||||||||||    
T  4253 gtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  339 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  339 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 16247 - 16083
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 155  Q
    |||||||||| | ||||||| ||||||  || |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||    
T  16247 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactt 16149  T
Q  156 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgta 221  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  16148 tttgaa-ctttgcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 4253 - 4377
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |    
T  4253 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttct 4351  T
Q  159 gaatttttgcttcgtgcacgaggggac 185  Q
    ||| | ||||||||||||| |||||||    
T  4352 gaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 349
Target Start/End: Original strand, 102489 - 102787
Alignment:
Q  49 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtc 147  Q
    |||||||||||||||||| | ||||||| ||||||  || ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| ||||||||    
T  102489 agttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtc 102587  T
Q  148 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatc 246  Q
     ||| |||||||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| ||||||||| || ||||   | | || ||    
T  102588 ggccactttttgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtc 102685  T
Q  247 ctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattg 346  Q
    ||||   ||||   |||| |||||||| |||||  ||||| || ||| ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||    
T  102686 ctacagaaacaccttggtaatcgaattagttgagtttagt-aaatttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttg 102784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  343 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 441  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  ||||  | ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  442 atgtagatatacacaggtt 460  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 493650 - 493800
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 198  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  199 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 251  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 525205 - 525062
Alignment:
Q  90 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--ctt 187  Q
    |||||||| |||||||||||| |||| | |  ||||||||||||||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | |    
T  525205 tctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccat 525108  T
Q  188 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    || ||||||||| ||||||||| || ||||||||||||| |||||||    
T  525107 ct-gagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  334 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 391  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 1659 - 1716
Alignment:
Q  400 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 456  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  1659 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 3871 - 3975
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 156  Q
    |||||||||| |||  |||||||||||||||   |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| ||||    
T  3871 caagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccacttt 3970  T
Q  157 ttgaa 161  Q
    |||||    
T  3971 ttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 17643 - 17492
Alignment:
Q  57 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 156  Q
    |||||||||  | |||||||  |||||| || |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| ||||    
T  17643 caagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccacttt 17544  T
Q  157 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 208  Q
     |||| ||||| ||||||||| ||| || | | ||||||||||||||| ||||    
T  17543 ctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 24178 - 24342
Alignment:
Q  86 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 184  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  185 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 251  Q
    | | |||||  || | || |||||| |||| |||||||||||||||| |||| |||| |||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtaggcatca-aatcctact 24342  T

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Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 121369 - 121200
Alignment:
Q  65 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 164  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  121369 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 121270  T
Q  165 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  121269 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 121200  T

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Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 132246 - 132077
Alignment:
Q  65 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 164  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  132246 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 132147  T
Q  165 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  132146 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 132077  T

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Target: scaffold0232 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 19059 - 19166
Alignment:
Q  127 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 225  Q
    ||||||||| | | ||||||||||| ||||||||||||| ||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaatttt-gcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  226 ccttgtata 234  Q
    | |||||||    
T  19158 ctttgtata 19166  T

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Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 72747 - 72565
Alignment:
Q  68 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 167  Q
    |||||||||| |||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  72747 taagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 72649  T
Q  168 cttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 251  Q
    |||||||||  |||||| | | || || ||  |||| |||| | |||| ||| ||||||||||||||| |||||| |||||||||    
T  72648 cttcgtgcattaggggaccctttttagtatcttaaagtgttccttttagcttatataacccttgtataagtatca-aatcctact 72565  T

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Target: scaffold0107 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 41113 - 41236
Alignment:
Q  12 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 111  Q
    ||||| || ||| ||||||| |||  |||||| | |||||||||||||||||||  | ||||||| ||||||  ||||||||| ||||| |||||||||     
T  41113 gaacccgtaagcaaaaaaccatttacattctgcttgaagttcgctcaagcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagc 41212  T
Q  112 gaactatctgtcgcttaagcgaag 135  Q
    ||||||   |||||||||||||||    
T  41213 gaactagacgtcgcttaagcgaag 41236  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 219  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  220 tataacc 226  Q
    |||||||    
T  51558 tataacc 51552  T

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Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 11631 - 11782
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-tt 197  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||| | | ||||| | ||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggacccttttgagtattt 11729  T
Q  198 ctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 251  Q
     | || | |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  11730 tttaagtttttcttttagcttgtataacccttgtataggcatca-aatcctact 11782  T

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Target: scaffold0720 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 3831 - 3966
Alignment:
Q  50 gttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 148  Q
    ||||||||||||||||| | ||||||| || |||   || || ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||| |||||||    
T  3831 gttcgctcaagcgaaccgtgagcgagcgaggacctcaactttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtca 3930  T
Q  149 gcctctttttgaatttttgcttcgtgcacgaggggac 185  Q
    |||| ||||||||   ||||||||||||| |||||||    
T  3931 gcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

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Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 9950 - 10053
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 381  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| ||    
T  9950 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtatttt 10048  T
Q  382 ctgga 386  Q
    |||||    
T  10049 ctgga 10053  T

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Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 11196 - 11324
Alignment:
Q  122 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 220  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| | | | || |||||  |||| |||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgt 11294  T
Q  221 ataacccttgtataggtatcagaatcctact 251  Q
    ||||| |||||||||| |||| |||||||||    
T  11295 ataactcttgtataggcatca-aatcctact 11324  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  100 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 161  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  190 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

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Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  282 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 349  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

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Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 46685 - 46748
Alignment:
Q  394 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 456  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  46685 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 46748  T

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Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 50958 - 51021
Alignment:
Q  394 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 456  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  50958 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 51021  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 134924 - 134867
Alignment:
Q  59 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 116  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  134924 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

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Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  121 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 185  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 1343 - 1391
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    |||||||||||||  ||||||||||||   |||||||||||||||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaacc 1391  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 3328 - 3372
Alignment:
Q  190 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 234  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||    
T  3328 tgagcattctgaaatgtttctttcaacttgtataacctttgtata 3372  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 49645 - 49597
Alignment:
Q  18 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 66  Q
    |||||||||||||| ||||||||||||   |||||||||||| ||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaacc 49597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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