View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12620_low_6 (Length: 401)
Name: NF12620_low_6
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12620_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Complemental strand, 42529911 - 42529527
Alignment:
| Q |
5 |
agtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataatg |
104 |
Q |
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| T |
42529911 |
agtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataatg |
42529812 |
T |
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| Q |
105 |
aaacccctataaattagctggaataatagctgcgagtagcagaatatataatcaaaagaaatgtctaatcagttaattcatatcatttaggggtgtgggg |
204 |
Q |
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| T |
42529811 |
aaacccctataaattagctggaataatagctgcaagtagcagaatatataatcgaaagaaatgtctaatcagttaattcatatcatttaggggtgtgggg |
42529712 |
T |
|
| Q |
205 |
aagtgatgttaatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaaa |
304 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529711 |
aagtgatgttgatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaaa |
42529612 |
T |
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| Q |
305 |
tactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctggaggtttgatgtcca |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42529611 |
tactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctagaggtttgatgtcca |
42529527 |
T |
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