View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12620_low_7 (Length: 364)

Name: NF12620_low_7
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12620_low_7
NF12620_low_7
[»] chr4 (12 HSPs)
chr4 (4-364)||(37257170-37257542)
chr4 (152-325)||(37237871-37238044)
chr4 (152-325)||(37253211-37253384)
chr4 (185-263)||(21187588-21187666)
chr4 (185-296)||(27245503-27245614)
chr4 (62-126)||(37253136-37253200)
chr4 (173-296)||(37232971-37233094)
chr4 (173-263)||(37242325-37242415)
chr4 (4-74)||(37253036-37253106)
chr4 (4-41)||(37237714-37237751)
chr4 (78-126)||(37237812-37237860)
chr4 (242-280)||(37245426-37245464)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 37257170 - 37257542
Alignment:
Q  4 aggaggagcagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaa------------ggagaaggagcgttcttcacaggtatg 91  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||| |    
T  37257170 aggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggaggggaaggagaaggagcgttcttcacaggtacg 37257269  T
Q  92 ggaggagatgccaccggtgagacagctgaaggagatggtgcctgagaggatttgggtggagtggcaacgggtgatatggttggagatgatgaaggagatt 191  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37257270 ggaggagatgccaccggtgagacagcggaaggagatggtgcctgagaggatttgggtggagtggcaacgggtgatatggttggagatgatgaaggagatt 37257369  T
Q  192 gagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaagccattgtagaaagatgaagaaggagaatgaaattttaggg 291  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37257370 gagcaatagtggaactaaccaacagtgtagccacaagcatcaatacaactgtgtaagaagccattgtagaaagttgaagaaggagaatgaaattttaggg 37257469  T
Q  292 tttataagtagttttgaagtagtgagtagaagaagaattagaggctagaggagttgtttgtttgtgatttgat 364  Q
    |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37257470 tttataagaagttttgaagtagtaagtagaagaagaattagagcctagaggagttgtttgtttgtgatttgat 37257542  T

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Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 152 - 325
Target Start/End: Original strand, 37237871 - 37238044
Alignment:
Q  152 gtggcaacgggtgatatggttggagatgatgaaggagattgagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | | || ||||    
T  37237871 gtggcaacgggtgatatggttggagatgatgaaggagattgagcaatggtggaactaacaaatagtgtagccacaagcatcaacacaactttataggaag 37237970  T
Q  252 ccattgtagaaagatgaagaaggagaatgaaattttagggtttataagtagttttgaagtagtgagtagaagaa 325  Q
    ||||||| ||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  37237971 ccattgttgaaaattgaagaaggagaatgaaattttaggatttataagaagttttgaagtagtgagtagaagaa 37238044  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 325
Target Start/End: Original strand, 37253211 - 37253384
Alignment:
Q  152 gtggcaacgggtgatatggttggagatgatgaaggagattgagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaag 251  Q
    |||||||| || |||||||| |||||||| || ||||||||||| | ||| |||||||||||||||||||||||||||||||| |||| |||||| ||||    
T  37253211 gtggcaacaggggatatggtgggagatgaagatggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaaaacaactgtgtatgaag 37253310  T
Q  252 ccattgtagaaagatgaagaaggagaatgaaattttagggtttataagtagttttgaagtagtgagtagaagaa 325  Q
    |||||||| |||  ||| |||||||||| |||  |||||||||||||| |||||||||| |||| |||||||||    
T  37253311 ccattgtaaaaatttgatgaaggagaataaaaaattagggtttataagaagttttgaagcagtgtgtagaagaa 37253384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 21187588 - 21187666
Alignment:
Q  185 ggagattgagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaagccattgtagaaa 263  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||    
T  21187588 ggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaatgcaactttgtaggaagccattgtagaaa 21187666  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 27245503 - 27245614
Alignment:
Q  185 ggagattgagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaagccattgtagaaagatgaagaaggagaatgaaat 284  Q
    ||||||||||| | | | |||||||||||||||||||||||||| |||||| ||| | |||| ||| ||||||||||||  |||||| | ||||| |||     
T  27245503 ggagattgagcgaagatagaactaaccaatagtgtagccacaaggatcaatgcaactttgtaggaaaccattgtagaaaattgaagacgaagaattaaaa 27245602  T
Q  285 tttagggtttat 296  Q
     |||||||||||    
T  27245603 attagggtttat 27245614  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 37253136 - 37253200
Alignment:
Q  62 gaaggagaaggagcgttcttcacaggtatgggaggagatgccaccggtgagacagctgaaggaga 126  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||| || |||||    
T  37253136 gaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggagggaga 37253200  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 37232971 - 37233094
Alignment:
Q  173 ggagatgatgaaggagattgagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaagccattgtagaaagatgaagaa 272  Q
    |||||||| || || |||||||| | ||||||||| ||||| | || ||||||||||||||| |||| | |||| |||||||| ||| |||  |||||||    
T  37232971 ggagatgacgatggtgattgagcgaaggtggaactcaccaacaatgcagccacaagcatcaacacaactttgtaggaagccatagtaaaaatttgaagaa 37233070  T
Q  273 ggagaatgaaattttagggtttat 296  Q
     || |||||||  |||||||||||    
T  37233071 tgaaaatgaaaaattagggtttat 37233094  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 37242325 - 37242415
Alignment:
Q  173 ggagatgatgaaggagattgagcaatggtggaactaaccaatagtgtagccacaagcatcaatacaaatgtgtaagaagccattgtagaaa 263  Q
    |||||||||||  ||||| | |||| ||| ||||||||||||||||  |||||||||||||| ||||   |||| |||||||| |||||||    
T  37242325 ggagatgatgatagagatcgtgcaaaggtagaactaaccaatagtgaggccacaagcatcaacacaaccatgtaggaagccatagtagaaa 37242415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 37253036 - 37253106
Alignment:
Q  4 aggaggagcagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaaggagaaggag 74  Q
    ||||||||  || |||||||||||||||| ||||||||| |||||||||||||| || |||| || |||||    
T  37253036 aggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggag 37253106  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 37237714 - 37237751
Alignment:
Q  4 aggaggagcagagatggatgatggagtaacagcaggag 41  Q
    |||||||| |||||||||||||||||||||||||||||    
T  37237714 aggaggagtagagatggatgatggagtaacagcaggag 37237751  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 37237812 - 37237860
Alignment:
Q  78 tcttcacaggtatgggaggagatgccaccggtgagacagctgaaggaga 126  Q
    |||||||||||| |||||||||||||||||||||| |||| || |||||    
T  37237812 tcttcacaggtacgggaggagatgccaccggtgagtcagcggagggaga 37237860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 37245426 - 37245464
Alignment:
Q  242 gtgtaagaagccattgtagaaagatgaagaaggagaatg 280  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  37245426 gtgtaggaagccatagtagaaagatgaagaaggagaatg 37245464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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