View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12620_low_9 (Length: 338)
Name: NF12620_low_9
Description: NF12620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12620_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 69 - 322
Target Start/End: Original strand, 38823386 - 38823658
Alignment:
| Q |
69 |
caatttcattgcaaatccataaccacatgaacaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacaaattaattagata |
168 |
Q |
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| T |
38823386 |
caatttcattgcaaatccataaccacatgaacaattttgatgagattaattaattaacactgagagtctttctaaaattgaagaacaaattaattagata |
38823485 |
T |
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| Q |
169 |
aaattagaatcacaa---------gaaatggattttaaattaacaatccttttaatccttagattaaaaaacgattcttaagggatgaaaaacaacacca |
259 |
Q |
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| T |
38823486 |
aaattagaatcacaacaagtggattaaatggattttaaattaacaatccttttaatccttagattaaaaaatgattcttaagggatgaaaaacaacacca |
38823585 |
T |
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| Q |
260 |
gtgtt----------tttccatgtttgttgctttttgattgatttaagagacaaacacaaaaatcataaattg |
322 |
Q |
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| T |
38823586 |
gtgtttcgaaaattctttctatgttttttactttttgattgatttaagagacaaacacaaaaatcataaattg |
38823658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 69 - 321
Target Start/End: Complemental strand, 26582513 - 26582242
Alignment:
| Q |
69 |
caatttcattgcaaatccataaccacatgaacaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacaaattaattagata |
168 |
Q |
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| T |
26582513 |
caatttcattgcaaatccataacaacttgaacaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacgaattaattagata |
26582414 |
T |
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| Q |
169 |
aaattagaatcacaa---------gaaatggattttaaattaacaatccttttaatccttagattaaaaaacgattcttaagggatgaaaaacaacacca |
259 |
Q |
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| T |
26582413 |
aaattagaatcacaacaaatggattaaatggattttaaattaacaatccttttaatccttagattaaaaaatgattcttaagggatgaaaaacaacacca |
26582314 |
T |
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| Q |
260 |
gtgtt----------tttccatgtttgttgctttttgattgatttaagagacaaacacaaaaatcataaatt |
321 |
Q |
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| T |
26582313 |
gtgtttcgaaaattctttctatgtttgttactttttgattgatttaagagacaaacacaaaaatcataaatt |
26582242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 44390586 - 44390497
Alignment:
| Q |
93 |
acatgaacaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacaaattaattagataaaattagaatcacaa |
183 |
Q |
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| T |
44390586 |
acatgaaca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaa |
44390497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 20168877 - 20168788
Alignment:
| Q |
93 |
acatgaacaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacaaattaattagataaaattagaatcacaa |
183 |
Q |
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| T |
20168877 |
acatgaaca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaa |
20168788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 28583927 - 28583985
Alignment:
| Q |
135 |
tctttctaaaattgaagaacaaattaattagataaaattagaatcacaagaaatggatt |
193 |
Q |
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| T |
28583927 |
tctttctaaaattgaagaaaaaattaattaattaaaattagaatcacaacaaagggatt |
28583985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 2398086 - 2397952
Alignment:
| Q |
135 |
tctttctaaaattgaagaacaaattaattagataaaattagaatcacaaga---------aatggattttaaattaacaatccttttaatcc-ttagatt |
224 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||| |||||||| ||||||| |||| || |
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| T |
2398086 |
tctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaagggattgaatgaattttaaattgacaatcctcttaatcctttaggtt |
2397987 |
T |
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| Q |
225 |
-aaaaaacgattcttaagggatgaaaaacaacacc |
258 |
Q |
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| T |
2397986 |
aaaaaaacgagtcttaagggatgaaaaacaacacc |
2397952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 44095887 - 44095781
Alignment:
| Q |
69 |
caatttcattgcaaa-tccataaccacatgaaca-attttgatgagattaattaattaaaac-tgagagtctttctaaaattgaagaacaaattaattag |
165 |
Q |
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||||||||||||||| || |||||||||| || ||||||||||||||| |||||| |||| ||| | ||||||||||| ||||||| |||||||||| |
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| T |
44095887 |
caatttcattgcaaaatctataaccacataaaatgattttgatgagattacttaattgaaacatgaaa-tctttctaaaactgaagaagaaattaattaa |
44095789 |
T |
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| Q |
166 |
ataaaatt |
173 |
Q |
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||||||| |
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| T |
44095788 |
ttaaaatt |
44095781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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