View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12621_high_10 (Length: 319)
Name: NF12621_high_10
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 47128354 - 47128085
Alignment:
| Q |
40 |
acaacatcataaaaattgagaacattgtttctacaaaatataatacacttaaaagatgtaacctattcatccaagactttgtgatagacaacttcacctt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47128354 |
acaacatcataaaaattgagaacattgtttctacaaaatataatacacttaaaagatgtaacctattcatccaagactttgtgatagacaacttcacctt |
47128255 |
T |
|
| Q |
140 |
agaattgtatgtgaaaggatnnnnnnnnnnnnnnnnnnnncctattttagttgtctatcatcatcaaaagtcagagcgactcagcgctttggaattgtta |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47128254 |
agaattgtatgtgaaaggataaaaaattgaaagaaaaaa-cctattttagttgtctatcatcatcaaaagtcagaacgactcagcgctttggaattgtta |
47128156 |
T |
|
| Q |
240 |
gtttcttgttccaattctttgcgagattcatcccatagttgtgtttcaatacccaacttcctaatctctgc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47128155 |
gtttcttgttccaattctttgcgagattcatcccatagttgtgtttcaatacccaacttcctaatctctgc |
47128085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University