View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_high_20 (Length: 206)
Name: NF12621_high_20
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_high_20 |
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| [»] chr6 (13 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 3e-99; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30955226 - 30955023
Alignment:
| Q |
1 |
tccgggtattacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
30955226 |
tccgggtattacatcccctatgcaaatactccaaacctcgagctatccctttg--gcaatttgatagaaattatcccaactcaaagatgcaatggtttca |
30955129 |
T |
|
| Q |
101 |
ggtccctcattgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaa |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955128 |
ggtcccttattgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaa |
30955029 |
T |
|
| Q |
201 |
caacat |
206 |
Q |
| |
|
|||||| |
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|
| T |
30955028 |
caacat |
30955023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30944966 - 30944763
Alignment:
| Q |
1 |
tccgggtattacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttca |
100 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
30944966 |
tccggatattacaccccctatgcaaatactccaaacttcgagctatccctttg--gcaatttgatacaaattatcccaacttaaagatgcaatggtttca |
30944869 |
T |
|
| Q |
101 |
ggtccctcattgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30944868 |
ggtcccttattgtaaataaatttgtcaagggaaccattagacataaattcatatacgagagctttattacaaccttcaaaacaaaatccaagaagggtaa |
30944769 |
T |
|
| Q |
201 |
caacat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
30944768 |
caacat |
30944763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 30986279 - 30986086
Alignment:
| Q |
11 |
acatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctcat |
110 |
Q |
| |
|
|||||| ||||||||||| || | || || ||||||||||| |||||||||| || |||||||| ||| ||||||||||| ||||||||| ||| || |
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| T |
30986279 |
acatcctctatgcaaatattctagcccacgggctatccctttc--gcaatttgatgcatattatcccaacttaaagatgcaatcgtttcaggttccttat |
30986182 |
T |
|
| Q |
111 |
tgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30986181 |
tgtatataaatttgtcaagggaaccattagacataaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacat |
30986086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 30992443 - 30992250
Alignment:
| Q |
11 |
acatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctcat |
110 |
Q |
| |
|
|||||| ||||||||||| || | || || ||||||||||| |||||||||| || |||||||| ||| ||||||||||| ||||||||| ||| || |
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| T |
30992443 |
acatcctctatgcaaatattctagcccacgggctatccctttc--gcaatttgatgcatattatcccaacttaaagatgcaatcgtttcaggttccttat |
30992346 |
T |
|
| Q |
111 |
tgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30992345 |
tgtatataaatttgtcaagggaaccattagacataaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacat |
30992250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 31145624 - 31145816
Alignment:
| Q |
10 |
tacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctca |
109 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||||||| | |
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|
| T |
31145624 |
tacatcctctatgcaagtactctagcccacgagctatccctttt--gcaatttgatacaaattctcccaactcaaagatgcaattgtttcaggtccctta |
31145721 |
T |
|
| Q |
110 |
ttgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaac |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |
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| T |
31145722 |
ttgtaaataaatttgtcaagtgaaccattggacataaattcatatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtaacaac |
31145816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 31171937 - 31172129
Alignment:
| Q |
10 |
tacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctca |
109 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||||||| | |
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|
| T |
31171937 |
tacatcctctatgcaagtactctagcccacgagctatccctttt--gcaatttgatacaaattctcccaactcaaagatgcaattgtttcaggtccctta |
31172034 |
T |
|
| Q |
110 |
ttgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaac |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
31172035 |
ttgtaaataaatttgtcaagagaaccatttgacataaattcgtatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtaacaac |
31172129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 31201489 - 31201683
Alignment:
| Q |
10 |
tacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctca |
109 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
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|
| T |
31201489 |
tacatcctctatgcaagtactctagtccacgagctattcctttt--gcaatttgatacaaattatcccaactcaaagatgcaatggtttctggtccctta |
31201586 |
T |
|
| Q |
110 |
ttgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31201587 |
ttgtaaataagtttgtcaagagaaccattggacataaattcatatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtgacaacat |
31201683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 31224467 - 31224273
Alignment:
| Q |
10 |
tacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctca |
109 |
Q |
| |
|
||||||| | |||||| ||||| | || |||||||||||||| ||||||| |||||| ||||||| ||||||||||||||| |||||| || ||| | |
|
|
| T |
31224467 |
tacatcctccatgcaagtactctagtccacgagctatccctttt--gcaattttatacaatttatcccaactcaaagatgcaattgtttcaagttcctta |
31224370 |
T |
|
| Q |
110 |
ttgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31224369 |
ttgtagataaatttgtcaagagaaccatttgacataaattcatatacgagagcttttttgttgccttcaaaacaaaatccaagaagggtgacaacat |
31224273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 30960961 - 30960768
Alignment:
| Q |
11 |
acatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctcat |
110 |
Q |
| |
|
|||||| ||||||||||| || | || || ||||||||||| |||||||||| || || ||||| ||| |||||| |||||||||||||||||| || |
|
|
| T |
30960961 |
acatcctctatgcaaatattctagcccacgggctatccctttc--gcaatttgatgcatatcatcccaacttaaagatacaatggtttcaggtcccttat |
30960864 |
T |
|
| Q |
111 |
tgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||||||| |||||||| || | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
30960863 |
tgtaaatatatttgtcaagagaaccattggacataaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacat |
30960768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 31189682 - 31189876
Alignment:
| Q |
10 |
tacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctca |
109 |
Q |
| |
|
||||||| |||||||| ||||| | || || ||||||||||| |||||||||||||||||||||| ||||||||||| ||| | || ||||||| |
|
|
| T |
31189682 |
tacatcctctatgcaagtactctagtccacgggctatccctttt--gcaatttgatacaaattatcccaactcaaagatgtaattctctctggtcccttg |
31189779 |
T |
|
| Q |
110 |
ttgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31189780 |
ttgtagataaatttgtcaagagaaccatttgacataaattcatatataagtgctttttttttgccttcaaaacaaaatccaagaagggtgacaacat |
31189876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 31229747 - 31229563
Alignment:
| Q |
10 |
tacatcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctca |
109 |
Q |
| |
|
|||||||| ||||||| ||||| | ||||||||||||||||| ||||||||||| | | | |||| ||||| ||||| |||| | |||||||||| |
|
|
| T |
31229747 |
tacatcccttatgcaagtactcaagccctcgagctatccctttc--gcaatttgataaagaatgtcccaactcagagatggaatg-tctcaggtcccttt |
31229651 |
T |
|
| Q |
110 |
ttgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaaggg |
197 |
Q |
| |
|
||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
31229650 |
ttgtagatgaatttttcaagggaaccattcgacattaattcataaatgagagcttttttccgtccttcaaaacaaaatccaagaaggg |
31229563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 31214196 - 31214004
Alignment:
| Q |
12 |
catcccctatgcaaatactccaaacctcgagctatccctttgtggcaatttgatacaaattatccccactcaaagatgcaatggtttcaggtccctcatt |
111 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||||| ||||||| ||| | | | |||| ||||| |||| | ||||||| || | | || |
|
|
| T |
31214196 |
catcctctatgcaggtactccaaccctcgagctatcccttta--gcaatttcataaagaatctcccaactcagagattgataggtttcatgttgcgcgtt |
31214099 |
T |
|
| Q |
112 |
gtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacat |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| || || ||||| |||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
31214098 |
gtaaataaatttgtcaagcgaaccattagacatgaattcatagatcagggcttttttgcgaccgtcaaaacaaaatccaagaagggcaacaacat |
31214004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 31131490 - 31131601
Alignment:
| Q |
92 |
atggtttcaggtccctcattgtaaataaatttgtcaagggaaccattagacataaattcatatatgagagctttattgcaaccttcaaaacaaaatccaa |
191 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||| |
|
|
| T |
31131490 |
atggattcaggtcccttattgtagataaatttgtcaagagaaccattagacataaattcatatacaagagcttttttggtgccttcgtaacaaaatccaa |
31131589 |
T |
|
| Q |
192 |
gaagggtaacaa |
203 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31131590 |
gaagggtgacaa |
31131601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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