View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_high_7 (Length: 368)
Name: NF12621_high_7
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 12751930 - 12751585
Alignment:
| Q |
1 |
caaatagaaatcgtggtcaaagatgttgtactataatattttaaataatagcannnnnnnnaggacaataatattttaaatgatagcattggtgatgata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12751930 |
caaatagaaatcgtggtcaaggatgttgtactataatattttaaataatagcatttttttt-ggacaataatattttaaatgatagcattggtgatgata |
12751832 |
T |
|
| Q |
101 |
aatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgagtagattacgatgtcaaactgtttgcaccgatgag |
200 |
Q |
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| T |
12751831 |
aatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgagtagattacgatgtcaaactgtttgcaccgatgag |
12751732 |
T |
|
| Q |
201 |
tagattcccttcagtggattttggtgcttgagtttagttaatgtaactaattggcctgtcattacgatatttgtcaagattgattattgaacattgatta |
300 |
Q |
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||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12751731 |
tagatccccttcggttgattttggtgcttgagtttagttaatgtaactaattggcctgtcattacgatatttgtcaagattgattattgaacattgatta |
12751632 |
T |
|
| Q |
301 |
tatctgagggcaagaataactaaataatctttctttatttaatgcaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12751631 |
tatctgagggcaagaataactaaataatctttctttatttaatgcaa |
12751585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 12814892 - 12814547
Alignment:
| Q |
1 |
caaatagaaatcgtggtcaaagatgttgtactataatattttaaataatagcannnnnnnnaggacaataatattttaaatgatagcattggtgatgata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12814892 |
caaatagaaatcgtggtcaaggatgttgtactataatattttaaataatagcatttttttt-ggacaataatattttaaatgatagcattggtgatgata |
12814794 |
T |
|
| Q |
101 |
aatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgagtagattacgatgtcaaactgtttgcaccgatgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12814793 |
aatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgaggagattacgatgtcaaactgtttgcaccgatgag |
12814694 |
T |
|
| Q |
201 |
tagattcccttcagtggattttggtgcttgagtttagttaatgtaactaattggcctgtcattacgatatttgtcaagattgattattgaacattgatta |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814693 |
tagattcccttcggtggattttggtgcttgagtttagttaatgtaactaattggcctgtcattacgatatttgtcaagattgattattgaacattgatta |
12814594 |
T |
|
| Q |
301 |
tatctgagggcaagaataactaaataatctttctttatttaatgcaa |
347 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814593 |
tatccgagggcaagaataactaaataatctttctttatttaatgcaa |
12814547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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