View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_high_9 (Length: 343)

Name: NF12621_high_9
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_high_9
NF12621_high_9
[»] chr8 (2 HSPs)
chr8 (18-333)||(29774819-29775127)
chr8 (26-238)||(29785201-29785413)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 29775127 - 29774819
Alignment:
Q  18 atgattctggcaaggcaagggctataggtgtaagcaatttctctatcaagaagttgggagatttgctcgaggttgctcgtgttccacctgctgtcaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29775127 atgattctggcaaggcaagggctataggtgtaagcaatttctctatcaagaagttgggagatttgcttgaggttgctcgtgttccacctgctgtcaatca 29775028  T
Q  118 agtggaatgccatccttcctggaggcaggacaaactccgcgatttctgcaaatccaaaggtgttcacttctctgtaagtttccgactcttgaatgatcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  29775027 agtggaatgccatccttcctggaggcaggacaaactccgcgatttctgcaattccaaaggtgttcacttctctgtaagtttccgactcttaaatgatcat 29774928  T
Q  218 tattttgtttccgcacattacgtttactatatgttcatgaaaccttttcgttttcttcaaataagtcattatatttttgcatgattttctgtaatgttta 317  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||||    
T  29774927 tattttgtttccgcacattacgtttac--tatgttcatgaaaccttttcgctttct-----taagtcattatatttttgcatgattttctgtaatgttta 29774835  T
Q  318 gggttattcacctttg 333  Q
    ||||||||||||||||    
T  29774834 gggttattcacctttg 29774819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 29785413 - 29785201
Alignment:
Q  26 ggcaaggcaagggctataggtgtaagcaatttctctatcaagaagttgggagatttgctcgaggttgctcgtgttccacctgctgtcaatcaagtggaat 125  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  29785413 ggcaaggcacgggctataggtgtaagcaatttctcttccaagaagttgggggatttgctcgaggttgcccgtgttcctcctgctgtcaatcaagtagaat 29785314  T
Q  126 gccatccttcctggaggcaggacaaactccgcgatttctgcaaatccaaaggtgttcacttctctgtaagtttccgactcttgaatgatcattattttgt 225  Q
    ||||||||||||||||||||||||| || || |||||||| || ||||||||||| ||| ||||||||||||| | | ||||||||| ||||||||||||    
T  29785313 gccatccttcctggaggcaggacaagctgcgtgatttctgtaattccaaaggtgtccacctctctgtaagttttcaagtcttgaatgctcattattttgt 29785214  T
Q  226 ttccgcacattac 238  Q
    ||| |||||||||    
T  29785213 ttctgcacattac 29785201  T

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