View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_low_1 (Length: 912)

Name: NF12621_low_1
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_low_1
NF12621_low_1
[»] chr5 (27 HSPs)
chr5 (499-897)||(9074616-9075011)
chr5 (501-897)||(8535318-8535714)
chr5 (514-897)||(8528776-8529156)
chr5 (499-897)||(1600193-1600571)
chr5 (501-744)||(8677622-8677865)
chr5 (17-282)||(8528185-8528457)
chr5 (501-730)||(8636684-8636913)
chr5 (501-858)||(8644029-8644386)
chr5 (17-193)||(8534750-8534925)
chr5 (17-283)||(1600815-1601080)
chr5 (785-858)||(8636968-8637041)
chr5 (500-608)||(8548273-8548384)
chr5 (793-858)||(8677923-8677988)
chr5 (783-856)||(2856824-2856897)
chr5 (783-856)||(2874434-2874507)
chr5 (793-850)||(2904938-2904995)
chr5 (793-877)||(8641480-8641564)
chr5 (783-856)||(2844997-2845070)
chr5 (17-160)||(8640730-8640871)
chr5 (501-607)||(8641195-8641297)
chr5 (328-404)||(8528599-8528675)
chr5 (826-897)||(8548002-8548073)
chr5 (499-607)||(9003282-9003393)
chr5 (539-607)||(2905127-2905195)
chr5 (688-740)||(8548141-8548193)
chr5 (541-592)||(2845222-2845273)
chr5 (541-592)||(2857043-2857094)
[»] chr7 (3 HSPs)
chr7 (504-897)||(48361745-48362140)
chr7 (541-897)||(35779694-35780041)
chr7 (34-193)||(48362369-48362525)
[»] chr4 (3 HSPs)
chr4 (514-897)||(9442937-9443317)
chr4 (51-282)||(9442379-9442607)
chr4 (328-404)||(9442760-9442836)
[»] scaffold0627 (3 HSPs)
scaffold0627 (516-609)||(4492-4585)
scaffold0627 (775-856)||(4738-4819)
scaffold0627 (688-730)||(4663-4705)
[»] chr1 (2 HSPs)
chr1 (775-860)||(26324200-26324285)
chr1 (516-730)||(5130638-5130853)
[»] chr6 (2 HSPs)
chr6 (516-611)||(16716179-16716274)
chr6 (793-856)||(16716455-16716518)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 499 - 897
Target Start/End: Complemental strand, 9075011 - 9074616
Alignment:
Q  499 tattagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtggga 598  Q
    |||||||||||||||| |||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9075011 tattagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtggga 9074912  T
Q  599 ttacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaa 698  Q
    |||||||||||||| ||||| |||||||||| ||||| |||| ||||||| ||||||| |||||||||||| | || |||||||| | | |||||| |||    
T  9074911 ttacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataa 9074812  T
Q  699 caatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttg 798  Q
    ||||||||||||||||||||||||||||||||| |||   ||||||  || |  ||||| | || ||  ||| || ||||||||||||||||  ||||||    
T  9074811 caatatggcagcaccttcttcaaagtgttttatcggc---cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttg 9074715  T
Q  799 taaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || ||  ||||||||||||||||||| |||||||||    
T  9074714 taaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 9074616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 501 - 897
Target Start/End: Original strand, 8535318 - 8535714
Alignment:
Q  501 ttagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggatt 600  Q
    |||||||||||||| |||||||| |||||||||||  |||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  8535318 ttagaagctacattcttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggatt 8535417  T
Q  601 acttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaaca 700  Q
    |||||||||||  |||||| |||||| |  ||||| |||| || |||| ||||||| |||||||||||||| || ||||||||   |||||||| |||||    
T  8535418 acttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataaca 8535517  T
Q  701 atatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttgta 800  Q
    ||||||||||||||||||||||||||||||| ||| | | ||||       ||| || |  ||||    | || |||||||| |||||||  ||||||||    
T  8535518 atatggcagcaccttcttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaatgttgta 8535617  T
Q  801 aaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| || | |||||||||||||| |||||||||    
T  8535618 aatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaagaaatcccttt 8535714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 514 - 897
Target Start/End: Original strand, 8528776 - 8529156
Alignment:
Q  514 ttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaaaaaaca 613  Q
    |||||||||| |||||||||||  |||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |      
T  8528776 ttttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataat 8528875  T
Q  614 ttgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaacaatatggcagcacc 713  Q
    ||   ||||||||||| ||||| |||| ||||||  |||||||||||||||| |||||  | ||||||||   |||||||| | ||||||||||||||||    
T  8528876 ttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacc 8528975  T
Q  714 ttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttgtaaaccttagtccat 813  Q
    |||||||||||||||||| ||| | | ||||     |  || || |  |||||  ||| | |||||||||||||||| ||||||||||| ||||||||||    
T  8528976 ttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat--cca-aaggattgaacgaagtatcgatgttgtaaatcttagtccat 8529072  T
Q  814 gattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| |  ||| ||   ||||||||||| || |||||||||    
T  8529073 gattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttt 8529156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 499 - 897
Target Start/End: Complemental strand, 1600571 - 1600193
Alignment:
Q  499 tattagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtggga 598  Q
    |||| ||||||||||| |||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  1600571 tatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcggga 1600472  T
Q  599 ttacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaa 698  Q
    ||| ||||||| |   ||||||||||||||| |||   |||  |||| ||  ||||||  |||||||||| || || ||||||||   | ||| || |||    
T  1600471 ttatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataa 1600375  T
Q  699 caatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttg 798  Q
    ||||||||||||||||||||||||||||| ||| |||   ||||||   | |  ||||||            | | |||||||| ||||||| |   |||    
T  1600374 caatatggcagcaccttcttcaaagtgttgtatcggc---cataaacccgaacaccatga------------aaaaggattgaatgaagtatcgtacttg 1600290  T
Q  799 taaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||| |  |||||||||||||||| |||||||||    
T  1600289 taaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggt--agtcacaaatgtaaagaaatcccttt 1600193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 501 - 744
Target Start/End: Original strand, 8677622 - 8677865
Alignment:
Q  501 ttagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggatt 600  Q
    |||| ||||||||| |||||||| |||||||||||  ||||||||||||||||||||||  |||||||||||||| |||| |||||||| |||||| |||    
T  8677622 ttagcagctacattcttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaatt 8677721  T
Q  601 acttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaaca 700  Q
    | ||||| |||    |||  | | || || ||||| |||| ||||||  ||| ||| || ||||||||||| || | ||||||   |||||||| |||||    
T  8677722 atttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataaca 8677821  T
Q  701 atatggcagcaccttcttcaaagtgttttataggcaaacataaa 744  Q
    ||||||||||||| ||||||||||||||||  ||| ||||||||    
T  8677822 atatggcagcaccctcttcaaagtgttttaccggccaacataaa 8677865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 8528185 - 8528457
Alignment:
Q  17 aattaaaacagtgttagggaataatggataagtaaatattagctgaaactacaaattgtaagggatggaataagctctaaaaactatttactacttagca 116  Q
    |||||||||| | || ||||||| ||| ||||||| || ||||| ||||| ||||||| | ||||||||  |  ||| | |||||||||||||| |||||    
T  8528185 aattaaaacaatattggggaatattggttaagtaa-tagtagctaaaactgcaaattgcaggggatggatcagcctcaagaaactatttactacctagca 8528283  T
Q  117 actaaagaagatccaaataattgacattacaacaactatccattcattttcacctcttccatcaaaacgaaagtata--------taataagatgtaact 208  Q
    ||||||||||||||||||||  |||| |||||||||| |||||||||||||  | | |||||||| |||||||||||        | ||||||||||| |    
T  8528284 actaaagaagatccaaataaccgacaatacaacaactgtccattcattttctacacctccatcaacacgaaagtataaagaaaatttataagatgtaatt 8528383  T
Q  209 agtaacgaaagattgtgtccagatgannnnnnncccattaactatcagagccaaacatgtagttaaagatggta 282  Q
    |||||| |||||||||||||| ||||       |||||||||||| | ||||||| ||||| |||||| |||||    
T  8528384 agtaacaaaagattgtgtccacatgatttttttcccattaactattaaagccaaagatgtaattaaaggtggta 8528457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 501 - 730
Target Start/End: Original strand, 8636684 - 8636913
Alignment:
Q  501 ttagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggatt 600  Q
    |||||| ||||||| | |||||| |||||||||||  ||||| |||||||||||||||| ||||||||||||||| |||| |||||||| |||||| |||    
T  8636684 ttagaatctacattctaaccttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaatt 8636783  T
Q  601 acttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaaca 700  Q
    | ||||| ||||   |||  | | || || ||||  |||| ||||||  ||  ||| || ||||||||||| || | ||||||   |||||||| |||||    
T  8636784 atttcaacaaactcggaagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataaca 8636883  T
Q  701 atatggcagcaccttcttcaaagtgtttta 730  Q
    |||||||||| || ||||||||||||||||    
T  8636884 atatggcagccccctcttcaaagtgtttta 8636913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 501 - 858
Target Start/End: Original strand, 8644029 - 8644386
Alignment:
Q  501 ttagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggatt 600  Q
    |||| ||||||||| |||||||| |||||||||||  | |||| |||||||||||||||  |||||||||||||| |||| |||||||| |||||| |||    
T  8644029 ttagcagctacattcttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaatt 8644128  T
Q  601 acttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaaca 700  Q
    | ||||| |||    |||  | | || || ||||| |||| ||||||  ||| ||| |  ||||||||||| || | ||||||   |||||||| |||||    
T  8644129 atttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataaca 8644228  T
Q  701 atatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttgta 800  Q
    |||||||||| || |||||||||| |||||  ||| ||||||||     |  |   |||  | |   |||  | ||| ||| | ||||||  ||||||||    
T  8644229 atatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagtatcaatgttgta 8644328  T
Q  801 aaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatca 858  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  8644329 aaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatca 8644386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 8534750 - 8534925
Alignment:
Q  17 aattaaaacagtgttagggaataatggataagtaaatattagctgaaactacaaattgtaagggatggaataagctctaaaaactatttactacttagca 116  Q
    |||||||||| | || ||||||| ||| ||||||| || ||||| ||||| ||||||  | ||||||||  |  ||| | |||||||||||||| |||||    
T  8534750 aattaaaacaatattggggaatattggttaagtaa-tagtagctaaaactgcaaattacaggggatggatcagcctcaagaaactatttactacctagca 8534848  T
Q  117 actaaagaagatccaaataattgacattacaacaactatccattcattttcacctcttccatcaaaacgaaagtata 193  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||||  ||| ||| |||| |||||||||||    
T  8534849 actaaagaagatccaaataactgagattacaacaactgtccattcattttcttctcctccgtcaacacgaaagtata 8534925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 1601080 - 1600815
Alignment:
Q  17 aattaaaacagtgttagggaataatggataagtaaatattagctgaaactacaaattgtaagggatggaataagctctaaaaactatttactacttagca 116  Q
    |||||||||| | || ||||||||||| ||||||| |||||||| ||||| ||||||| | |||||||||||  ||  | |||| |||||||||||||||    
T  1601080 aattaaaacaatatttgggaataatggttaagtaa-tattagctaaaactgcaaattgcaggggatggaatacacttaagaaacaatttactacttagca 1600982  T
Q  117 actaaagaagatccaaataattgacattacaacaactatccattcattttcacctcttccatcaaaacgaaagtatat-----aataagatgtaactagt 211  Q
    ||||| |||  | ||||||| |||||||||||||||| ||||||    ||| |||| |||||||| ||||||||||||     | | |||||||| ||||    
T  1600981 actaa-gaacgttcaaataactgacattacaacaactgtccatt----ttctcctcctccatcaacacgaaagtatataggaaatttagatgtaattagt 1600887  T
Q  212 aacgaaagattgtgtccagatgannnnnnncccattaactatcagagccaaacatgtagttaaagatggtag 283  Q
    ||| |||||||| |||||  |||       || ||||||||||||||||| | ||||| |||||| ||||||    
T  1600886 aacaaaagattgcgtccacgtgatttttttcctattaactatcagagccagatatgtaattaaaggtggtag 1600815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 785 - 858
Target Start/End: Original strand, 8636968 - 8637041
Alignment:
Q  785 aagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatca 858  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  8636968 aagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatca 8637041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 500 - 608
Target Start/End: Complemental strand, 8548384 - 8548273
Alignment:
Q  500 attagaagctaca---tttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgg 596  Q
    |||||||||||||   || |||| ||| |||||||||||  |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |    
T  8548384 attagaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttg 8548285  T
Q  597 gattacttcaaa 608  Q
     |||||||||||    
T  8548284 aattacttcaaa 8548273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 793 - 858
Target Start/End: Original strand, 8677923 - 8677988
Alignment:
Q  793 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatca 858  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||    
T  8677923 atgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatca 8677988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 783 - 856
Target Start/End: Complemental strand, 2856897 - 2856824
Alignment:
Q  783 cgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 856  Q
    ||||||||  |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2856897 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 783 - 856
Target Start/End: Complemental strand, 2874507 - 2874434
Alignment:
Q  783 cgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 856  Q
    ||||||||  |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2874507 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2874434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 793 - 850
Target Start/End: Complemental strand, 2904995 - 2904938
Alignment:
Q  793 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattg 850  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2904995 atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 2904938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 793 - 877
Target Start/End: Original strand, 8641480 - 8641564
Alignment:
Q  793 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcac 877  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||| |||| ||| || ||||||    
T  8641480 atgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcac 8641564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 783 - 856
Target Start/End: Complemental strand, 2845070 - 2844997
Alignment:
Q  783 cgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 856  Q
    ||||||||  ||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2845070 cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 8640730 - 8640871
Alignment:
Q  17 aattaaaacagtgttagggaataatggataagtaaatattagctgaaactacaaattgtaagggatggaataagctctaaaaactatttactacttagca 116  Q
    |||||||||| | |||||||| ||||| ||||||| |||||||| |||||  |||||| |  ||||||||||  ||  |||||| |||||||||||| ||    
T  8640730 aattaaaacaatattagggaacaatggttaagtaa-tattagctaaaactgaaaattgcagaggatggaatagtcttgaaaaac-atttactacttaaca 8640827  T
Q  117 actaaagaagatccaaataattgacattacaacaactatccatt 160  Q
    ||| ||| ||||||| | || ||| |||||||||||||||||||    
T  8640828 acttaagcagatccataaaactgaaattacaacaactatccatt 8640871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 607
Target Start/End: Original strand, 8641195 - 8641297
Alignment:
Q  501 ttagaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggatt 600  Q
    |||||||| ||||| || ||||| ||| ||||| || || ||||||||    ||||||| ||||||||||||||| |||| ||||||||||||||| |||    
T  8641195 ttagaagcaacattcttgccttgagtgaatatttaacacttcaatatt----cctttcacgacatccttcaatgagattagacttggaatatgtggaatt 8641290  T
Q  601 acttcaa 607  Q
    |||||||    
T  8641291 acttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 8528599 - 8528675
Alignment:
Q  328 cctaacaacatttctttctttctccaaatggaatggaaaaataggaa-attaaaatataagtagtaacataagaaact 404  Q
    ||||||||||| ||||  |||||||||||||||||||||||||| ||  ||||||||||||| |||||||| ||||||    
T  8528599 cctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaact 8528675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 826 - 897
Target Start/End: Complemental strand, 8548073 - 8548002
Alignment:
Q  826 ccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    |||||||| |||||||||||||||| ||||| |||||   || |||||||||||||||||||  ||||||||    
T  8548073 ccatattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatcccttt 8548002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 607
Target Start/End: Original strand, 9003282 - 9003393
Alignment:
Q  499 tattagaagctacatttttacct---tgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtg 595  Q
    |||||||||||||||  ||||||   || || || |||||| ||||||| ||||||||| || |   | ||||||||||| |||| ||||||||||||||    
T  9003282 tattagaagctacatccttacctccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtg 9003381  T
Q  596 ggattacttcaa 607  Q
    | ||||||||||    
T  9003382 gaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 539 - 607
Target Start/End: Complemental strand, 2905195 - 2905127
Alignment:
Q  539 cctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaa 607  Q
    |||||| ||||||||| |||| |||||| |||||||| |||| ||||||||||||| | || |||||||    
T  2905195 cctcaacattgtctccattcacgacatctttcaatgatattagacttggaatatgttgaataacttcaa 2905127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 740
Target Start/End: Complemental strand, 8548193 - 8548141
Alignment:
Q  688 gaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaaca 740  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||  ||||||||    
T  8548193 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaaca 8548141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 2845273 - 2845222
Alignment:
Q  541 tcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatat 592  Q
    |||| |||||||||||||| |||||| |||||||| |||| |||||||||||    
T  2845273 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatat 2845222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 2857094 - 2857043
Alignment:
Q  541 tcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatat 592  Q
    |||| |||||||||||||| |||||| |||||||| |||| |||||||||||    
T  2857094 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatat 2857043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 8e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 504 - 897
Target Start/End: Complemental strand, 48362140 - 48361745
Alignment:
Q  504 gaagctacatttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaa-----cttggaatatgtggga 598  Q
    ||||||||||| |||||||| ||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  48362140 gaagctacattcttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtggga 48362041  T
Q  599 ttacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaa 698  Q
    ||||||||||| |   |||||||||||| || ||  | |||  |||| ||  |||||| ||||||||||| || || ||||  |  | |||||||| |||    
T  48362040 ttacttcaaaagaacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataa 48361941  T
Q  699 caatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttg 798  Q
    ||||||||||||||||||||||||||||||||| |||   ||||||  || |  ||| |||| |  |  ||  || |||||||||| |||||||||||||    
T  48361940 caatatggcagcaccttcttcaaagtgttttatcggc---cataaagctgaatgccaagaagcaaaactgctcgaaggattgaacgcagtattgatgttg 48361844  T
Q  799 taaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    ||| || |||||||||||||||| |||||||||    
T  48361843 taaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatcccttt 48361745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 541 - 897
Target Start/End: Original strand, 35779694 - 35780041
Alignment:
Q  541 tcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaa 640  Q
    ||||||||||||||||| |  |||||||||||||| |||| ||||||||||||||| |||||||||| | |  |||||||| ||||| | ||||| ||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  641 gtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaaca 740  Q
     |||| || ||||||| ||||||||| |||| || ||||||||    ||||||| |||||||||||||         |||||| ||||||  ||| ||||    
T  35779794 ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttttaccggccaaca 35779884  T
Q  741 taaatttgtagtccatgaagtacgatcgcc-agatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcat 839  Q
    ||||     |  |  |||| || ||| ||| ||| | ||||| |||||| |  |||||||||||||||||||| ||||||||||||||||  ||||||||    
T  35779885 taaaccataacgcggtgaaataggatagcctaga-gaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcat 35779983  T
Q  840 aacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    ||||||||||| |||||||   || ||  || |||||||||||||||| |||||||||    
T  35779984 aacccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaaatcccttt 35780041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 48362525 - 48362369
Alignment:
Q  34 ggaataatggataagtaaatattagctgaaactacaaattgtaagggatggaataagctctaaaaactatttactacttagcaactaaagaagatccaaa 133  Q
    |||||||||| ||||||| |||||||| ||||| ||||||| |  ||||||||||  ||| |||| |||||||||| ||| ||||||| |||| ||||||    
T  48362525 ggaataatggttaagtaa-tattagctaaaactgcaaattgcagaggatggaatagtctcgaaaa-ctatttactaattaccaactaa-gaaggtccaaa 48362429  T
Q  134 taattgacattacaacaactatccattcattttcacctcttccatcaaaacgaaagtata 193  Q
    ||| ||||||||||||||||  |||||||||||| | || |||||||| |||||||||||    
T  48362428 taactgacattacaacaacttcccattcattttctcgtcctccatcaacacgaaagtata 48362369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 5e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 514 - 897
Target Start/End: Original strand, 9442937 - 9443317
Alignment:
Q  514 ttttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaaaaaaca 613  Q
    |||||||||| |||||||||||  |||||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||| |      
T  9442937 ttttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataat 9443036  T
Q  614 ttgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaacaatatggcagcacc 713  Q
    ||   ||||||||||| ||||| |||| ||||||  |||||||||||||||| |||||  | ||||||||   |||||||| | ||||||||||||||||    
T  9443037 ttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcacc 9443136  T
Q  714 ttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagatggattgaacgaagtattgatgttgtaaaccttagtccat 813  Q
    |||||||||||||||||| ||| | | ||||     |  || || |  |||||  ||| | |||||||||||||||| ||||||||||| ||||||||||    
T  9443137 ttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat--cca-aaggattgaacgaagtatcgatgttgtaaatcttagtccat 9443233  T
Q  814 gattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 897  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| |  ||| ||   ||||||||||| || |||||||||    
T  9443234 gattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttt 9443317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 51 - 282
Target Start/End: Original strand, 9442379 - 9442607
Alignment:
Q  51 aatattagctgaaactacaaattgtaagggatggaataagctctaaaaactatttactacttagcaactaaagaagatccaaataattgacattacaaca 150  Q
    |||| ||||| ||||| ||||||| | ||||||||  |  ||| | |||||||||||||| |||||||||||||||||||||||||  |||| |||||||    
T  9442379 aatagtagctaaaactgcaaattgcaggggatggatcagcctcaagaaactatttactacatagcaactaaagaagatccaaataaccgacaatacaaca 9442478  T
Q  151 actatccattcattttcacctcttccatcaaaacgaaagtatataataagatgtaactagtaacgaaagattgtgtccagatgannnnnnncccattaac 250  Q
    ||| |||||||||||||  | | |||||||| |||||| |   | ||||||||||| ||||||| ||||||||||||||  |||       |||||||||    
T  9442479 actgtccattcattttctacgcctccatcaacacgaaaat---ttataagatgtaattagtaacaaaagattgtgtccacgtgatttttttcccattaac 9442575  T
Q  251 tatcagagccaaacatgtagttaaagatggta 282  Q
    ||| | ||||||| ||||| |||||| |||||    
T  9442576 tattaaagccaaagatgtaattaaaggtggta 9442607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 9442760 - 9442836
Alignment:
Q  328 cctaacaacatttctttctttctccaaatggaatggaaaaataggaa-attaaaatataagtagtaacataagaaact 404  Q
    ||||||||||| | ||  |||||||||||||||||| ||||||| ||  ||||||||||||| |||||||| ||||||    
T  9442760 cctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagt-gtaacataggaaact 9442836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 516 - 609
Target Start/End: Original strand, 4492 - 4585
Alignment:
Q  516 ttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaaaa 609  Q
    |||||||| |||||||||||| |||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  4492 ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaa 4585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 775 - 856
Target Start/End: Original strand, 4738 - 4819
Alignment:
Q  775 ggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 856  Q
    |||||| || ||||||| |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  4738 ggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacat 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 730
Target Start/End: Original strand, 4663 - 4705
Alignment:
Q  688 gaatgatgtaacaatatggcagcaccttcttcaaagtgtttta 730  Q
    ||||||||||||||||  |||||||| ||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgtttta 4705  T

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Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 775 - 860
Target Start/End: Complemental strand, 26324285 - 26324200
Alignment:
Q  775 ggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcaga 860  Q
    ||||||||||||| || ||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  26324285 ggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcaga 26324200  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 516 - 730
Target Start/End: Original strand, 5130638 - 5130853
Alignment:
Q  516 ttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacatt 615  Q
    |||||||| ||| |||||||  ||||||||||||||||||||||  | |||||| | |||||||| ||||| ||||||||| ||||||||||      ||    
T  5130638 ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt 5130737  T
Q  616 gaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagt-acatcaaacaattttgggaatgatgtaacaatatggcagcacct 714  Q
    |||| | ||||||| ||||| |||| |||| ||  |||||| || ||||||| || | |  ||||| ||   |||||||| || |||||||||||||||     
T  5130738 gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 5130837  T
Q  715 tcttcaaagtgtttta 730  Q
    ||||||||||||||||    
T  5130838 tcttcaaagtgtttta 5130853  T

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Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 516 - 611
Target Start/End: Original strand, 16716179 - 16716274
Alignment:
Q  516 ttaccttgggtggatattcaatacctcaatattgtctcctttcaagacatccttcaatgaaattaaacttggaatatgtgggattacttcaaaaaa 611  Q
    |||||||| |||||||||||| ||||||||||| |||||||||| | ||||||||||||| |||| ||||||||||||||| ||||||| ||||||    
T  16716179 ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaaaa 16716274  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 793 - 856
Target Start/End: Original strand, 16716455 - 16716518
Alignment:
Q  793 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 856  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  16716455 atgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacat 16716518  T

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