View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_low_12 (Length: 289)
Name: NF12621_low_12
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 1000770 - 1000497
Alignment:
| Q |
1 |
gagtcatgtgatatttgaacatccatcttctttgaaacaattgcaatgaatcctaaaagaagaaagagattgttgatgatcttgttacattcagtaaggc |
100 |
Q |
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| T |
1000770 |
gagtcatgttatatttgaacatccatcttctttgaaacaattgcaatgaatcctaaaagaagaaatagattgttgatgatcttgttacattcagtaaggc |
1000671 |
T |
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| Q |
101 |
taaagagtattatgcaaaaattggtaagccttggaagataggctatttgctctatggtcctccaggaacaagaaaatcatcactagttactgccatttct |
200 |
Q |
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| T |
1000670 |
taaagagtattatgcaaaaattggtaagccttggaagataggctatttgttctatggtcctccaggaacaggaaaatcatcactagttactgccatttct |
1000571 |
T |
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| Q |
201 |
aannnnnnngaagtatgatatttatgacattgagttaaggaaattgttagatctaacattgagttaaggaaact |
274 |
Q |
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| T |
1000570 |
aatttttttgaagtatgatatttatgacattgagttaaggaaattgttagatctaacattgagttaaggaaact |
1000497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6968201 - 6968439
Alignment:
| Q |
1 |
gagtcatgtgatatttgaacatccatcttc-tttgaaacaattgcaatgaatcctaaaa-gaagaaagagattgttgatgatcttgttacattcagtaag |
98 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6968201 |
gagtcatgtgatatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttacattcagtaag |
6968300 |
T |
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| Q |
99 |
gctaaagagtattatgcaaaaattggtaagccttggaagataggctatttgctctatggtcctccaggaacaagaaaatcatcactagttactgccattt |
198 |
Q |
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| T |
6968301 |
gctaaagagtattatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaacaggaaaatcatcactagttgctgctattg |
6968400 |
T |
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| Q |
199 |
ctaannnnnnngaagtatgatatttatgacattgagttaa |
238 |
Q |
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| T |
6968401 |
ctaa-ttttttgaagtatgatatttatgacattgagttaa |
6968439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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