View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_low_15 (Length: 282)
Name: NF12621_low_15
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 41559918 - 41560185
Alignment:
| Q |
1 |
catactaacgtttagcttttctgcaggcccaccctattcctgtttatgttgaagaaattaaaggtatcctattttctggatgaatacactacatttttcc |
100 |
Q |
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| T |
41559918 |
catactaacgtttagcttttctccaggcccaccctattcctgtttatgttgaagaaattaaaggtatcctattttctggatgaatacactacatttttcc |
41560017 |
T |
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| Q |
101 |
gtttccttctaatacaattgtctacttcatattaaataaaaagttataagtgccgagaattaacattgctttactttttgcccatagatattgtaagcgc |
200 |
Q |
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| T |
41560018 |
gtttccttctaatacaattgtctacttcatattaaataaaaagttataagtgccgagaattaacattgctttactttttgcccatagatattgtaagcgc |
41560117 |
T |
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| Q |
201 |
ggctcgttacatattagttgtcgagaaagaatcaggcaagcaaatgctgtattttttaggggtaaaac |
268 |
Q |
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| T |
41560118 |
ggctcgttacatattagttgtcgagaaagaatcaggcaagcaaatgctgtattttttaggggtaaaac |
41560185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 41543826 - 41544092
Alignment:
| Q |
1 |
catactaacgtttagcttttctgcaggcccaccctattcctgtttatgttgaagaaattaaaggtatcctattttctggatgaatacactacatt-tttc |
99 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||| ||| |
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| T |
41543826 |
catactgacatttagcttttctgcaggcccaccctactcctgtttatgttgaagaaattaaaggtatcgtattttctgggtgaatgcactgcattgtttt |
41543925 |
T |
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| Q |
100 |
cgtttccttctaatacaattgtctacttcatattaaataaaaagttataagtgccgagaattaacattgctttactttttgcccatagatattgtaagcg |
199 |
Q |
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| T |
41543926 |
agtttccttctaataccactgtctactaaatattaaataaaaagtgacaagagccgaggactaacattgcttaac-ttttgccaatagatatcgtaagca |
41544024 |
T |
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| Q |
200 |
cggctcgttacatattagttgtcgagaaagaatcaggcaagcaaatgctgtattttttaggggtaaaac |
268 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
41544025 |
tggctcattacatattagttgtcgagaaagaatcaggtaagcaaatgctgta-ttttcaggggtaaaac |
41544092 |
T |
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