View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_low_17 (Length: 264)

Name: NF12621_low_17
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_low_17
NF12621_low_17
[»] chr3 (23 HSPs)
chr3 (13-161)||(5554357-5554505)
chr3 (13-161)||(5553168-5553316)
chr3 (13-161)||(47418542-47418690)
chr3 (21-164)||(23460169-23460312)
chr3 (13-161)||(16346604-16346752)
chr3 (13-163)||(16022718-16022868)
chr3 (13-161)||(25531606-25531754)
chr3 (23-161)||(47566446-47566585)
chr3 (175-246)||(13914016-13914087)
chr3 (175-246)||(7478999-7479070)
chr3 (175-246)||(7495796-7495867)
chr3 (37-83)||(25532821-25532867)
chr3 (173-231)||(286774-286831)
chr3 (29-131)||(2683485-2683586)
chr3 (178-232)||(17042630-17042684)
chr3 (178-232)||(6579425-6579479)
chr3 (119-161)||(13041900-13041942)
chr3 (119-161)||(13049977-13050019)
chr3 (178-246)||(8225062-8225130)
chr3 (188-246)||(13918071-13918128)
chr3 (177-246)||(11656251-11656319)
chr3 (172-237)||(28051361-28051425)
chr3 (15-96)||(32570515-32570595)
[»] chr7 (19 HSPs)
chr7 (13-162)||(9647501-9647650)
chr7 (13-161)||(40998785-40998933)
chr7 (13-162)||(23446631-23446780)
chr7 (13-161)||(41000644-41000793)
chr7 (13-158)||(7842649-7842794)
chr7 (22-160)||(9596011-9596149)
chr7 (23-160)||(9646975-9647112)
chr7 (88-161)||(24790092-24790165)
chr7 (88-161)||(24790156-24790229)
chr7 (161-249)||(24049659-24049748)
chr7 (175-246)||(9564481-9564552)
chr7 (175-246)||(9567130-9567201)
chr7 (175-246)||(4794448-4794519)
chr7 (175-238)||(4547681-4547744)
chr7 (172-238)||(16436999-16437063)
chr7 (178-232)||(10661091-10661145)
chr7 (173-231)||(26132803-26132860)
chr7 (165-238)||(10280027-10280099)
chr7 (178-238)||(20924978-20925037)
[»] chr4 (18 HSPs)
chr4 (13-162)||(13518526-13518675)
chr4 (13-161)||(15018206-15018354)
chr4 (13-161)||(15019846-15019994)
chr4 (13-161)||(9399185-9399333)
chr4 (13-162)||(39488716-39488865)
chr4 (23-160)||(13518000-13518137)
chr4 (55-161)||(46690478-46690584)
chr4 (44-161)||(21377171-21377287)
chr4 (42-163)||(11098467-11098589)
chr4 (58-162)||(42873040-42873143)
chr4 (43-159)||(18281342-18281457)
chr4 (58-129)||(22473681-22473750)
chr4 (178-231)||(15622666-15622718)
chr4 (29-161)||(24664001-24664135)
chr4 (177-246)||(10722211-10722279)
chr4 (177-246)||(10935980-10936048)
chr4 (161-249)||(11905302-11905393)
chr4 (39-110)||(19455904-19455975)
[»] chr1 (17 HSPs)
chr1 (13-163)||(36233276-36233426)
chr1 (13-162)||(36233922-36234071)
chr1 (13-161)||(20189363-20189511)
chr1 (13-157)||(24157619-24157763)
chr1 (13-162)||(20190996-20191145)
chr1 (31-163)||(20759074-20759202)
chr1 (13-161)||(48463921-48464071)
chr1 (21-163)||(48462774-48462915)
chr1 (42-162)||(40553872-40553991)
chr1 (42-161)||(31390119-31390237)
chr1 (42-161)||(40554650-40554768)
chr1 (177-246)||(17038474-17038543)
chr1 (178-246)||(47941204-47941272)
chr1 (169-238)||(15803981-15804049)
chr1 (172-238)||(23477805-23477870)
chr1 (176-204)||(12753287-12753315)
chr1 (178-238)||(17851246-17851305)
[»] chr5 (14 HSPs)
chr5 (13-161)||(245004-245152)
chr5 (13-161)||(29949556-29949705)
chr5 (13-161)||(29951194-29951343)
chr5 (21-162)||(38936686-38936827)
chr5 (55-162)||(21352695-21352802)
chr5 (30-161)||(16780582-16780711)
chr5 (67-144)||(21352593-21352670)
chr5 (175-246)||(22130711-22130782)
chr5 (172-238)||(26329085-26329149)
chr5 (173-231)||(20714618-20714675)
chr5 (39-112)||(23660940-23661013)
chr5 (39-112)||(23797557-23797630)
chr5 (178-238)||(13338818-13338877)
chr5 (172-224)||(23624102-23624152)
[»] scaffold0146 (1 HSPs)
scaffold0146 (13-161)||(31561-31709)
[»] chr8 (12 HSPs)
chr8 (13-161)||(8366077-8366225)
chr8 (13-156)||(17277384-17277527)
chr8 (13-158)||(17278241-17278385)
chr8 (21-161)||(6778229-6778368)
chr8 (88-161)||(17277647-17277720)
chr8 (42-162)||(17857132-17857251)
chr8 (58-161)||(23016372-23016474)
chr8 (175-246)||(1684201-1684272)
chr8 (42-161)||(23016690-23016808)
chr8 (180-238)||(23249965-23250023)
chr8 (178-232)||(9996727-9996781)
chr8 (211-256)||(33466015-33466060)
[»] chr2 (12 HSPs)
chr2 (13-161)||(18535868-18536016)
chr2 (13-161)||(22299660-22299808)
chr2 (13-161)||(22300462-22300610)
chr2 (13-163)||(24808706-24808857)
chr2 (13-161)||(24806850-24806999)
chr2 (13-161)||(31974059-31974207)
chr2 (70-161)||(24806059-24806151)
chr2 (42-161)||(44793404-44793522)
chr2 (42-163)||(44792583-44792703)
chr2 (161-256)||(29566221-29566316)
chr2 (103-145)||(24806145-24806188)
chr2 (177-236)||(21250077-21250134)
[»] scaffold0096 (1 HSPs)
scaffold0096 (21-159)||(22371-22509)
[»] scaffold0021 (2 HSPs)
scaffold0021 (13-161)||(17627-17775)
scaffold0021 (13-161)||(27158-27306)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-163)||(650-801)
[»] scaffold0013 (2 HSPs)
scaffold0013 (13-159)||(241018-241164)
scaffold0013 (132-169)||(242374-242411)
[»] scaffold0026 (2 HSPs)
scaffold0026 (25-162)||(640-777)
scaffold0026 (13-161)||(86553-86697)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-161)||(54826-54975)
[»] scaffold0269 (1 HSPs)
scaffold0269 (40-161)||(1962-2081)
[»] chr6 (8 HSPs)
chr6 (92-163)||(12037064-12037135)
chr6 (94-161)||(12036986-12037053)
chr6 (175-246)||(16309220-16309291)
chr6 (193-246)||(21727405-21727458)
chr6 (161-256)||(15004149-15004244)
chr6 (171-238)||(17864296-17864362)
chr6 (178-231)||(17869792-17869844)
chr6 (178-231)||(17879544-17879596)
[»] scaffold0094 (1 HSPs)
scaffold0094 (58-159)||(13510-13610)
[»] scaffold0359 (1 HSPs)
scaffold0359 (87-159)||(8902-8974)
[»] scaffold0139 (1 HSPs)
scaffold0139 (58-161)||(4195-4297)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-163)||(375304-375424)
[»] scaffold0321 (1 HSPs)
scaffold0321 (58-161)||(5190-5292)
[»] scaffold0180 (1 HSPs)
scaffold0180 (42-161)||(11394-11511)
[»] scaffold0480 (1 HSPs)
scaffold0480 (176-246)||(11414-11484)
[»] scaffold0008 (1 HSPs)
scaffold0008 (171-245)||(40557-40631)
[»] scaffold0032 (1 HSPs)
scaffold0032 (161-256)||(103315-103410)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-238)||(26629-26693)
[»] scaffold0064 (2 HSPs)
scaffold0064 (173-246)||(45730-45804)
scaffold0064 (173-256)||(52781-52865)
[»] scaffold0143 (1 HSPs)
scaffold0143 (211-256)||(36556-36601)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 5554357 - 5554505
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5554357 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 5554456  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5554457 caatgactttattattcttgtcaagagagagaattttaggatcacatca 5554505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 5553316 - 5553168
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5553316 ggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttatttca 5553217  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5553216 caatgactttattattcttgtcaagagagagaattttaggatcacatca 5553168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 47418542 - 47418690
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  47418542 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattcca 47418641  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  47418642 caatgactttattattcttttcaagagagagaatattaggatcacatca 47418690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 23460312 - 23460169
Alignment:
Q  21 agagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgact 120  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  23460312 agagctccagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattctacaatgact 23460213  T
Q  121 ttattattcttatcaagagagagaattttaggatcacatcacag 164  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  23460212 ttattattcttgtcaagagagagaattttaggatcacatcacag 23460169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 16346752 - 16346604
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16346752 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattcca 16346653  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  16346652 caatgactttattattcttttccagagagagaatattaggatcacatca 16346604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 16022718 - 16022868
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  16022718 ggacatccagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattcca 16022817  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcaca 163  Q
    ||||||||||||||||||| |||| ||| | ||| ||||||||||||||||    
T  16022818 caatgactttattattcttgtcaaaagatataatattaggatcacatcaca 16022868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 25531754 - 25531606
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |    
T  25531754 ggacatccagagctccagatatagtcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttttttcta 25531655  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  25531654 caatgaatttattattcttgtcaagagagagaattttaggatcacatca 25531606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 47566585 - 47566446
Alignment:
Q  23 agcttcagatatagccaaaacaagacagacatat--catgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgact 120  Q
    |||| ||||||||||||| |||||||| ||||||  ||||| |||||||||||||||||| || | |||||||| |   |||||||||||||||||||||    
T  47566585 agctccagatatagccaagacaagacaaacatatatcatgatctacgaaaataaaattttaaatc-aaaattaaatcaattcttttattccacaatgact 47566487  T
Q  121 ttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  47566486 ttattattcttgtcaagaaagagaattttaggatcacatca 47566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 13914016 - 13914087
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||    
T  13914016 agatgaagttaccttcaaacaaactacctaacaccgtgcttcacagctttggtgtagtacacaaactaccta 13914087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 7479070 - 7478999
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||||||| |||||||||||||||||||||    
T  7479070 agatgaagttaccttcaaacaaactacctaacaccgtgcttcacagcttttgtgtagtacacaaactaccta 7478999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 7495867 - 7495796
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||| |||||||||||||||||  ||| ||||| | ||||||||||||| ||||||||||||||    
T  7495867 agatgaagttacattcaaacaaactacctaacaccgtgcttcatagctttggtgtagcacacaaactaccta 7495796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 25532821 - 25532867
Alignment:
Q  37 ccaaaacaagacagacatatcatgacctacgaaaataaaattttgaa 83  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  25532821 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaa 25532867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 286831 - 286774
Alignment:
Q  173 aaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtag 231  Q
    |||||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||    
T  286831 aaagatgaagttaccttcaaacaaac-aactacaaccttgcttaaaagctttggtgtag 286774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 2683586 - 2683485
Alignment:
Q  29 agatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattatt 128  Q
    ||||||||  |||| ||||||||||| | |||| |||| ||||||| | |||||||  |||||||||||| || |||||||||| ||||| |||||||||    
T  2683586 agatatagataaaataagacagacatgttatgatctacaaaaataacactttgaaca-aaaattaatttgatttttttattccaaaatgattttattatt 2683488  T
Q  129 ctt 131  Q
    |||    
T  2683487 ctt 2683485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 17042684 - 17042630
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagt 232  Q
    |||||||||||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  17042684 tgaagttaccttcaaacaaactacctaacaccgtgcttcacagctttggtgtagt 17042630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 6579479 - 6579425
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagt 232  Q
    |||||||||||||||||||||||||||  | | ||||| ||||||||||||||||    
T  6579479 tgaagttaccttcaaacaaactacctaacatcgtgcttcacagctttggtgtagt 6579425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 13041942 - 13041900
Alignment:
Q  119 ctttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  13041942 ctttattattcttgtcaagagagagaattttaggatcatatca 13041900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 13050019 - 13049977
Alignment:
Q  119 ctttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  13050019 ctttattattcttgtcaagagagagaattttaggatcatatca 13049977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 8225062 - 8225130
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||||||||||||  ||| || || ||| ||| |||||||| ||||| |||||||    
T  8225062 tgaagttaccttcaaacaaactacctaacaccttgtttcacaacttcggtgtagtgcacaatctaccta 8225130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 13918071 - 13918128
Alignment:
Q  188 ttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||  ||| || || ||||||||||| ||||||||||||||||||    
T  13918071 ttcaaacaaactacctaacaccgtg-ttcacagctttggtctagtacacaaactaccta 13918128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 11656251 - 11656319
Alignment:
Q  177 atgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||||||| | |||  ||| || || ||| |||||||||||||||||| |||||||    
T  11656251 atgaagttaccttcaaacaaac-aactagcaccttgtttcacaactttggtgtagtacacaatctaccta 11656319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 28051361 - 28051425
Alignment:
Q  172 caaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacaca 237  Q
    ||||||||||||||||||||||||||| | |||||||| | ||| | |||||| | ||||||||||    
T  28051361 caaagatgaagttaccttcaaacaaac-aactacaaccgtacttcagagcttttgagtagtacaca 28051425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 32570595 - 32570515
Alignment:
Q  15 acatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatt 96  Q
    ||||| ||| || |||||||||  ||||||| | |||||||| |||| |||||||||||| |||| ||| ||||||||||||    
T  32570595 acatccagaactccagatatagtaaaaacaaaatagacatataatgatctacgaaaataacatttagaa-ccaaaattaatt 32570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 9647501 - 9647650
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9647501 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 9647600  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcac 162  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9647601 caatgactttattattcttgtcaagagagagaattttaggatcacatcac 9647650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 40998785 - 40998933
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998785 ggacatccagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 40998884  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40998885 caatgactttattattcttgtcaagagagagaattttaggatcacatca 40998933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 23446780 - 23446631
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23446780 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 23446681  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcac 162  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  23446680 caatgactttattattcttttcaagagagagaatattaggatcacatcac 23446631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 41000644 - 41000793
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaa-taaaattttgaacccaaaattaatttggttcttttattcc 111  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41000644 ggacatccagagctccagatatagccaaaacaagaccgacatatcatgacctacgaaaaataaaattttgaacccaaaattaatttggttcttttattcc 41000743  T
Q  112 acaatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41000744 acaatgactttattattcttgtcaagagagagaattttaggatcacatca 41000793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 7842794 - 7842649
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| ||||||  ||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7842794 ggacatccagagctctagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 7842695  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcaca 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  7842694 caatgactttattattcttgtcaagagagagaattttaggatcaca 7842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 9596011 - 9596149
Alignment:
Q  22 gagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactt 121  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  9596011 gagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactt 9596110  T
Q  122 tattattcttatcaagagagagaattttaggatcacatc 160  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  9596111 tattattattgtcaagagagagaattttaggatcacatc 9596149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 9646975 - 9647112
Alignment:
Q  23 agcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgacttt 122  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  9646975 agctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataacttt 9647074  T
Q  123 attattcttatcaagagagagaattttaggatcacatc 160  Q
    |||||| || ||||||||||||||||||||||||||||    
T  9647075 attattattgtcaagagagagaattttaggatcacatc 9647112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 24790165 - 24790092
Alignment:
Q  88 aaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24790165 aaattaatttggttcttttattccacaatgactttattattcttgtcaagagagataattttaggatcacatca 24790092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 24790156 - 24790229
Alignment:
Q  88 aaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24790156 aaattaatttggttcttttattccacaatgactttattattcttgtcaagagagataattttaggatcacatca 24790229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 24049659 - 24049748
Alignment:
Q  161 acagacacaatcaaagatgaagttaccttcaaa-caaactacctacaaccatgcttaacagctttggtgtagtacacaaactacctaact 249  Q
    |||||||||||||||| |||||||||||||||| ||||| | |||||||| ||||| | |||||||||||||||||||||||||||||||    
T  24049659 acagacacaatcaaagttgaagttaccttcaaaacaaacaatctacaaccgtgcttcatagctttggtgtagtacacaaactacctaact 24049748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 9564481 - 9564552
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||||||||||||||||  | | ||||| ||||||||||||||||||||||||||||||    
T  9564481 agatgaagttaccttcaaacaaactacctaacatcgtgcttcacagctttggtgtagtacacaaactaccta 9564552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 9567130 - 9567201
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||| ||||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||    
T  9567130 agatgaagttaacttcaaacaaactacctaacaccgtgcttcacagctttggtgtagtacacaaactaccta 9567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 4794519 - 4794448
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||| |||||||||||||||||||||||||    | ||||| ||||||||||||||||||||||||||||||    
T  4794519 agattaagttaccttcaaacaaactacctaacgtcgtgcttcacagctttggtgtagtacacaaactaccta 4794448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 4547744 - 4547681
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||| ||||||||||| ||  | | ||||| ||||||||||||||||||||||    
T  4547744 agatgaagttaccttgaaacaaactacatagcatcgtgctttacagctttggtgtagtacacaa 4547681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 16436999 - 16437063
Alignment:
Q  172 caaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||||||||||||||  | |||||||| ||||||| |||||||| |||| ||||||    
T  16436999 caaagatgaagttaccttcaaacaaa--aactacaaccttgcttaaaagctttggcgtagaacacaa 16437063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 10661091 - 10661145
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagt 232  Q
    |||||||||||||||||||||||||||  ||| ||||| ||| ||||||||||||    
T  10661091 tgaagttaccttcaaacaaactacctaacaccgtgcttcacaactttggtgtagt 10661145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 26132860 - 26132803
Alignment:
Q  173 aaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtag 231  Q
    |||||||||||||||||||||||||| | |||||||| ||||||| || ||||||||||    
T  26132860 aaagatgaagttaccttcaaacaaac-aactacaaccttgcttaaaagttttggtgtag 26132803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 10280027 - 10280099
Alignment:
Q  165 acacaatcaaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    |||||| || ||||||||||||||||||||| || | |||||||| | |||||||||||||| |||| ||||||    
T  10280027 acacaaacacagatgaagttaccttcaaacagac-aactacaaccttacttaacagctttggcgtagcacacaa 10280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 20925037 - 20924978
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||||||||| | |||||||| ||||||  ||||||||||||| ||||||    
T  20925037 tgaagttaccttcaaacaaac-agctacaaccttgcttataagctttggtgtagcacacaa 20924978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 13518526 - 13518675
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13518526 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 13518625  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcac 162  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13518626 caatgactttattattcttgtcaagagagagaattttaggatcacatcac 13518675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 15018206 - 15018354
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15018206 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 15018305  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15018306 caatgactttattattcttgtcaagagagataattttaggatcacatca 15018354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 15019846 - 15019994
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15019846 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 15019945  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15019946 caatgactttattattcttgtcaagagagataattttaggatcacatca 15019994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 9399185 - 9399333
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9399185 ggacatccagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 9399284  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  9399285 caatgactttattattcttgtcaagagagataattttaggatcacatca 9399333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 39488716 - 39488865
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  39488716 ggacatctagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattcca 39488815  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcac 162  Q
     ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39488816 taatgaatttattattcttttcaagagagagaattttaggatcacatcac 39488865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 13518000 - 13518137
Alignment:
Q  23 agcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgacttt 122  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  13518000 agctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataacttt 13518099  T
Q  123 attattcttatcaagagagagaattttaggatcacatc 160  Q
    |||||| || ||||||||||||||||||||||||||||    
T  13518100 attattattgtcaagagagagaattttaggatcacatc 13518137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 46690584 - 46690478
Alignment:
Q  55 atcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggat 154  Q
    |||||||||||||||||||||| ||| ||   ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46690584 atcatgacctacgaaaataaaactttaaatttaaaattaatttagttcttttattccacactgactttattattcttatcaagagagagaattttaggat 46690485  T
Q  155 cacatca 161  Q
    |||||||    
T  46690484 cacatca 46690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 21377287 - 21377171
Alignment:
Q  44 aagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagag 143  Q
    |||||||| | || ||||||||||||||||||| | |||||| ||||| |||||||||||||||||||| | |||||||||||||||| ||||| ||||     
T  21377287 aagacagatacataatgacctacgaaaataaaaatctgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagggagaa 21377189  T
Q  144 aattttaggatcacatca 161  Q
     || |||||||| |||||    
T  21377188 tatcttaggatcgcatca 21377171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 11098589 - 11098467
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaa-tttggttcttttattccacaatgactttattattcttatcaagaga 140  Q
    |||||||||| | || ||||||||||||||||| | |||||||| |||| ||| |||| ||||||||||||| ||||| |||||||||||| | ||| ||    
T  11098589 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattccataatgaatttattattcttgtaaaggga 11098490  T
Q  141 gagaattttaggatcacatcaca 163  Q
    ||  || ||||||||||||||||    
T  11098489 gaacatcttaggatcacatcaca 11098467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 42873040 - 42873143
Alignment:
Q  58 atgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcac 157  Q
    ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| ||||  || ||||||||||    
T  42873040 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttaggatcac 42873138  T
Q  158 atcac 162  Q
    |||||    
T  42873139 atcac 42873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 18281342 - 18281457
Alignment:
Q  43 caagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagaga 142  Q
    ||||||||| | || |||||||||||||||||   |||||||| ||||| |||||| ||||||||||| | |||||||||||||||||| | ||| ||||    
T  18281342 caagacagatacataatgacctacgaaaataactatttgaaccaaaaat-aatttgattcttttattcgataatgactttattattcttgtaaagggaga 18281440  T
Q  143 gaattttaggatcacat 159  Q
      || ||||||||||||    
T  18281441 acatcttaggatcacat 18281457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 22473750 - 22473681
Alignment:
Q  58 atgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattc 129  Q
    |||||| |||||||||| | |||||||| ||||  || ||||||||||||||||| ||||||||||||||||    
T  22473750 atgaccaacgaaaataacaatttgaaccaaaaa--aaattggttcttttattccataatgactttattattc 22473681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 15622666 - 15622718
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtag 231  Q
    ||||||||||||||||||||| || ||||||| ||||||| |||||||||||||    
T  15622666 tgaagttaccttcaaacaaacaac-tacaaccttgcttaaaagctttggtgtag 15622718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 24664001 - 24664135
Alignment:
Q  29 agatatagccaaaacaagacagacatatcatgaccta--cgaaaataaaat-tttgaacccaaaattaatttggttcttttattccacaatgactttatt 125  Q
    |||||| | |||||||||||||| |||| |||| |||  |||| ||||||  |||||||| ||||| ||||||||||| |||| ||| ||| |||| ||     
T  24664001 agatatggacaaaacaagacagatatataatgatctatacgaatataaaaactttgaaccaaaaat-aatttggttctcttatgccataataacttaatg 24664099  T
Q  126 attcttatcaagagagagaattttaggatcacatca 161  Q
    ||| || ||||| ||||| || ||||||||||||||    
T  24664100 attattttcaagggagaggatattaggatcacatca 24664135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 10722211 - 10722279
Alignment:
Q  177 atgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||||||| | |||  ||| || || ||| |||||||||||||||||| |||||||    
T  10722211 atgaagttaccttcaaacaaac-aactagcaccttgtttcacaactttggtgtagtacacaatctaccta 10722279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 10935980 - 10936048
Alignment:
Q  177 atgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||||||| | |||  ||| || || ||| |||||||||||||||||| |||||||    
T  10935980 atgaagttaccttcaaacaaac-aactagcaccttgtttcacaactttggtgtagtacacaatctaccta 10936048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 11905302 - 11905393
Alignment:
Q  161 acagacacaatcaaagatgaagttaccttcaaac--aaactacctacaaccatgcttaacagctttggtgtagtac-acaaactacctaact 249  Q
    ||||| |||| ||| ||| |||||||| |||||   ||||| | ||||||| ||||||||| ||||||||||||||  ||||||||||||||    
T  11905302 acagatacaaacaatgattaagttaccctcaaaacaaaacttcttacaaccgtgcttaacaactttggtgtagtacttcaaactacctaact 11905393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 19455975 - 19455904
Alignment:
Q  39 aaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttc-ttttattc 110  Q
    ||||||| |||||||||| || |||||| ||||||| | || ||| |||||||||||||||||| ||||||||    
T  19455975 aaaacaaaacagacatataatcacctacaaaaataacactt-gaaaccaaaattaatttggttcattttattc 19455904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 36233426 - 36233276
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36233426 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 36233327  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcaca 163  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  36233326 caatgactttattattcttgtcaagagagataattttaggatcacatcaca 36233276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 36233922 - 36234071
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36233922 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 36234021  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcac 162  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  36234022 caatgactttattattcttgtcaagagagataattttaggatcacatcac 36234071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 20189363 - 20189511
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  20189363 ggacatccagaactccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaattaatttggttcttttattcca 20189462  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||    
T  20189463 caatgactttattatttttttcaagagagagaattttaggatcacatca 20189511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 24157619 - 24157763
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  24157619 ggacatccagagctccagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattcca 24157718  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcac 157  Q
     |||||||||||||||||| |||||||||||||||||||||||||    
T  24157719 taatgactttattattcttttcaagagagagaattttaggatcac 24157763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 20190996 - 20191145
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |    
T  20190996 ggacatccaaagctccagatatagtcaaaacaagacagacatatcatgacatacgaaaataaaactttgaacccaaaattaattaggttcttttattcta 20191095  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatcac 162  Q
     |||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  20191096 taatgactttattattcttttcaagagagataattttaggttcacatcac 20191145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 20759202 - 20759074
Alignment:
Q  31 atatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattct 130  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||   || ||||||||||||||||||||    
T  20759202 atatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaa-ccaaaattaatttggttctt---tttcacaatgactttattattct 20759107  T
Q  131 tatcaagagagagaattttaggatcacatcaca 163  Q
    | ||||| |||||||||||||||||||||||||    
T  20759106 tgtcaagggagagaattttaggatcacatcaca 20759074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 48463921 - 48464071
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  48463921 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaa-tttgaacccaaaattattttggttcttttattcca 48464019  T
Q  113 caatgact---ttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||| |||   ||||||||||| |||||||| | ||||||  ||||||||||    
T  48464020 caataactttattattattcttgtcaagagacataatttttagatcacatca 48464071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 48462915 - 48462774
Alignment:
Q  21 agagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgact 120  Q
    |||||| || ||||||||||||||||||| |||||||||||||||| ||||||||| |||||| | |||||||||||| ||||||| || | ||||||||    
T  48462915 agagctccaaatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaatctaaaattaatttgattctttt-tttcgcaatgact 48462817  T
Q  121 ttattattcttatcaagagagagaattttaggatcacatcaca 163  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  48462816 ttattattcttctcaagagacagaattttaggatcacatcaca 48462774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 40553991 - 40553872
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  40553991 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 40553893  T
Q  142 agaattttaggatcacatcac 162  Q
    |  || |||||||||||||||    
T  40553892 aacatcttaggatcacatcac 40553872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 31390237 - 31390119
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  31390237 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 31390139  T
Q  142 agaattttaggatcacatca 161  Q
    |  || ||||||||||||||    
T  31390138 aacatcttaggatcacatca 31390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 40554650 - 40554768
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  40554650 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 40554748  T
Q  142 agaattttaggatcacatca 161  Q
    |  || ||||||||||||||    
T  40554749 aacatcttaggatcacatca 40554768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 17038474 - 17038543
Alignment:
Q  177 atgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||||||| ||||||  ||| ||||| ||||||||||||||||||||||||||||||    
T  17038474 atgaagttaccttcaaacaaattacctaacaccgtgcttcacagctttggtgtagtacacaaactaccta 17038543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 47941272 - 47941204
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||| |||||||    
T  47941272 tgaagttaccttcaaacaaactacctaacaccgtgcttcacagctttggtgtagtacacaatctaccta 47941204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 15804049 - 15803981
Alignment:
Q  169 aatcaaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    |||||| ||||||||||||||||||||||| | |||||||| | ||||| |||||||| |||| ||||||    
T  15804049 aatcaatgatgaagttaccttcaaacaaac-aactacaaccttacttaaaagctttggcgtagcacacaa 15803981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 23477870 - 23477805
Alignment:
Q  172 caaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    |||||||||||||||||||||| |||| | ||||||||   |||||||||||||| |||| ||||||    
T  23477870 caaagatgaagttaccttcaaataaac-aactacaacctaacttaacagctttggcgtagcacacaa 23477805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 12753287 - 12753315
Alignment:
Q  176 gatgaagttaccttcaaacaaactaccta 204  Q
    |||||||||||||||||||||||||||||    
T  12753287 gatgaagttaccttcaaacaaactaccta 12753315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 17851305 - 17851246
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||||||||| | |||||||| ||||||| || ||||| |||| ||||||    
T  17851305 tgaagttaccttcaaacaaac-aactacaaccttgcttaatagttttggcgtagcacacaa 17851246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 245004 - 245152
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  245004 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 245103  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  245104 caatgactttattattcttgtcaagagagataattttaggatcacatca 245152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 29949705 - 29949556
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29949705 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 29949606  T
Q  113 caatgactttattattcttatcaagagagagaa-ttttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  29949605 caatgactttattattcttgtcaagagagataatttttaggatcacatca 29949556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 29951343 - 29951194
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29951343 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 29951244  T
Q  113 caatgactttattattcttatcaagagagagaa-ttttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  29951243 caatgactttattattcttgtcaagagagataatttttaggatcacatca 29951194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 38936827 - 38936686
Alignment:
Q  21 agagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgact 120  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  38936827 agagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgact 38936728  T
Q  121 ttattattcttatcaagagagagaattttaggatcacatcac 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  38936727 ttattattcttgtcaagagagagaattttaggatcacatcac 38936686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 21352695 - 21352802
Alignment:
Q  55 atcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggat 154  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  21352695 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattcttttcaagagagagaattttaggat 21352794  T
Q  155 cacatcac 162  Q
    ||||||||    
T  21352795 cacatcac 21352802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 16780711 - 16780582
Alignment:
Q  30 gatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattc 129  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||  ||||||| ||||||||||   ||||||||||| |||||||||||||||||     
T  16780711 gatatagccaaaacaagacaaacacatcatgaactacgaaaataaaacattgaacc-aaaattaattcaattcttttattc-acaatgactttattattt 16780614  T
Q  130 ttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||||||||||||||||    
T  16780613 ttatcaagagagagaattttaggatcacatca 16780582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 21352670 - 21352593
Alignment:
Q  67 gaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagaga 144  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgactttattattcttttcaagagagaga 21352593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 22130782 - 22130711
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||||| ||||||||||  ||| ||||| ||||||||||||||||| ||||||||||||    
T  22130782 agatgaagttaccttcaaataaactacctaacaccgtgcttcacagctttggtgtagtatacaaactaccta 22130711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 26329149 - 26329085
Alignment:
Q  172 caaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    |||||||||||||||| |||||||||  | |||||||| ||||||| ||||||||||||| ||||||    
T  26329149 caaagatgaagttaccatcaaacaaa--aactacaaccttgcttaaaagctttggtgtagaacacaa 26329085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 20714675 - 20714618
Alignment:
Q  173 aaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtag 231  Q
    ||||| |||||||||||||||||||| || ||||||| ||||||||| |||||||||||    
T  20714675 aaagaagaagttaccttcaaacaaacaac-tacaaccttgcttaacaactttggtgtag 20714618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 23661013 - 23660940
Alignment:
Q  39 aaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttc-ttttattcca 112  Q
    |||||||||||| ||||| || |||||||||||||| |  ||||| |||||||||||||||||| ||||||||||    
T  23661013 aaaacaagacagtcatataatcacctacgaaaataata-cttgaaaccaaaattaatttggttcattttattcca 23660940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 23797557 - 23797630
Alignment:
Q  39 aaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttc-ttttattcca 112  Q
    |||||||||||| ||||| || |||||||||||||| |  ||||| |||||||||||||||||| ||||||||||    
T  23797557 aaaacaagacagtcatataatcacctacgaaaataata-cttgaaaccaaaattaatttggttcattttattcca 23797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 13338818 - 13338877
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||||||||| | |||||||| | |||||||||||||| |||| ||||||    
T  13338818 tgaagttaccttcaaacaaac-aactacaaccttacttaacagctttggcgtagcacacaa 13338877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 23624102 - 23624152
Alignment:
Q  172 caaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagcttt 224  Q
    ||||||||||||||||||||||||||  | |||||||| ||||||| ||||||    
T  23624102 caaagatgaagttaccttcaaacaaa--aactacaaccttgcttaaaagcttt 23624152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 31709 - 31561
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  31709 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattcca 31610  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31609 caatgactttattattcttttcaagagagagaatattaggatcacatca 31561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 8366225 - 8366077
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8366225 ggacatccagagctccaaatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 8366126  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  8366125 caatgaatttattattcttgtcaagagagagaattttaggatcacatca 8366077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 17277527 - 17277384
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  17277527 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttattcca 17277428  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatca 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  17277427 caatgactttattattcttgtcaagagagagaattttaggatca 17277384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 17278241 - 17278385
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||||||||||    
T  17278241 ggacatctagagctccagatatagccaaaacaagacagacatatcatgacttacgaaaataaactttgga-cccaaaattaatttggttcttttattcca 17278339  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcaca 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  17278340 caatgactttattattcttgtcaagagagagaattttaggatcaca 17278385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 6778229 - 6778368
Alignment:
Q  21 agagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgact 120  Q
    |||||| || |||||||||||||||||||||||||||||||| |  | |||||||| || ||||| |||||||||| ||||||||||||||||||| |||    
T  6778229 agagctccaaatatagccaaaacaagacagacatatcatgacatgtgtaaataaaacttagaacc-aaaattaattcggttcttttattccacaataact 6778327  T
Q  121 ttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  6778328 ttattattcttgtaaagggagagaattttaggatcacatca 6778368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 17277720 - 17277647
Alignment:
Q  88 aaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||    
T  17277720 aaattaatttggttcttttattccataatgactttattattcttgtcaagagagagaaatttaggatcacatca 17277647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 17857251 - 17857132
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  17857251 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 17857153  T
Q  142 agaattttaggatcacatcac 162  Q
    |  || |||||||||||||||    
T  17857152 aacatcttaggatcacatcac 17857132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 23016372 - 23016474
Alignment:
Q  58 atgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcac 157  Q
    ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| |||||||||| ||||||| | ||| ||||  || ||||||||||    
T  23016372 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcac 23016470  T
Q  158 atca 161  Q
    ||||    
T  23016471 atca 23016474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 1684201 - 1684272
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||| ||||||||||||||| ||||||  ||| ||||| |||| |||||||||||||||||||||||||    
T  1684201 agatgaaattaccttcaaacaaattacctaacaccgtgcttcacagttttggtgtagtacacaaactaccta 1684272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 23016690 - 23016808
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| || |||||||||| || ||||||| ||||||| | ||| |||    
T  23016690 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgatttttttattccataacgactttaatattcttgtaaagggag 23016788  T
Q  142 agaattttaggatcacatca 161  Q
    |  || ||||||||||||||    
T  23016789 aacatcttaggatcacatca 23016808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 23249965 - 23250023
Alignment:
Q  180 aagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||||||||| |||  ||| ||||| ||||||||||||||||||||||    
T  23249965 aagttaccttcaaacaaactatctaacaccgtgcttcacagctttggtgtagtacacaa 23250023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 9996727 - 9996781
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagt 232  Q
    |||||||||||||||||||||||||||  ||| ||||| ||| ||||||||||||    
T  9996727 tgaagttaccttcaaacaaactacctaacaccgtgcttcacaactttggtgtagt 9996781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 33466060 - 33466015
Alignment:
Q  211 tgcttaacagctttggtgtagtacacaaactacctaactctctgct 256  Q
    ||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  33466060 tgcttcacagctttggtgtagtttacaaactacctaactctttgct 33466015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 18535868 - 18536016
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  18535868 ggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattcca 18535967  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  18535968 caatgactttattattcttttcaagagagagaatattaggatcacatca 18536016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 22299808 - 22299660
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22299808 ggacatccaaagctccagatataggcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 22299709  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22299708 caatgaatttattattcttgtcaagagagagaattttaggatcacatca 22299660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 22300462 - 22300610
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22300462 ggacatccagagctccggatatagcaaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 22300561  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22300562 caatgaatttattattcttgtcaagagagagaattttaggatcacatca 22300610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 24808706 - 24808857
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  24808706 ggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattcca 24808805  T
Q  113 caatgactt-tattattcttatcaagagagagaattttaggatcacatcaca 163  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24808806 caatgacttctattattcttgtcaagagagagaattttaggatcacatcaca 24808857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 24806850 - 24806999
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  24806850 ggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattcca 24806949  T
Q  113 caatgac-tttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  24806950 caatgacttttattattcttgtcaagagagagaattttaggatcacatca 24806999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 31974059 - 31974207
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| ||| || | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  31974059 ggacatccagaactcccgatatagccaaaacaagacaaacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattcca 31974158  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||    
T  31974159 taatgactttattattcttttcaagagagagaattttaggatcacatca 31974207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 24806151 - 24806059
Alignment:
Q  70 aataaaattttgaacccaaaattaatttggttcttttattccacaatgac-tttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  24806151 aataaaacattgaacccaaaattaaattggttcttttattccacaatgacttttattattcttgtcaagagagagaattttaggatcacatca 24806059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 44793404 - 44793522
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  44793404 acaagacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 44793502  T
Q  142 agaattttaggatcacatca 161  Q
    |  || ||||||||||||||    
T  44793503 aacatcttaggatcacatca 44793522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 44792703 - 44792583
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||| ||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  44792703 acaagacagatacataatgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 44792605  T
Q  142 agaattttaggatcacatcaca 163  Q
    |  || ||||||||||||||||    
T  44792604 aacatcttaggatcacatcaca 44792583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 29566221 - 29566316
Alignment:
Q  161 acagacacaatcaaagatgaagttaccttcaaac--aaactacctacaaccatgcttaacagctttggtgtagtacacaaactacctaactctctgct 256  Q
    |||||||||||||||  ||||||||||||||||   |||| ||  |||||| ||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  29566221 acagacacaatcaaa--tgaagttaccttcaaaacaaaacaactaacaaccgtgcttcacagctttggtgtagtttacaaactacctaactctttgct 29566316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 24806145 - 24806188
Alignment:
Q  103 ttttattccacaatgacttt-attattcttatcaagagagagaa 145  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  24806145 ttttattccacaatgacttttattattcttatcaagagagagaa 24806188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 21250134 - 21250077
Alignment:
Q  177 atgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacac 236  Q
    ||||||||||||||||||| |  | |||||||| ||||| | ||||||||||||||||||    
T  21250134 atgaagttaccttcaaacata--aactacaaccttgcttcaaagctttggtgtagtacac 21250077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 22509 - 22371
Alignment:
Q  21 agagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgact 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22509 agagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgact 22410  T
Q  121 ttattattcttatcaagagagagaattttaggatcacat 159  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  22409 ttattattcttgtcaagagagataattttaggatcacat 22371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 17775 - 17627
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  17775 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaa 17676  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||    
T  17675 cactgactttattattcttgtcaagagagagaattttaggatcacatca 17627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 27306 - 27158
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  27306 ggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaa 27207  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||    
T  27206 cactgactttattattcttgtcaagagagagaattttaggatcacatca 27158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 650 - 801
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  650 ggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattcca 749  T
Q  113 caatgactt-tattattcttatcaagagagagaattttaggatcacatcaca 163  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  750 caatgacttctattattcttgtcaagagagagaattttaggatcacatcaca 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 241164 - 241018
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||      
T  241164 ggacatccagagcttcagatatagccaaaacaagacagacatattatgacctacgaaaataaaactttaaacccaaaattaatttggttcttttattctg 241065  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacat 159  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||    
T  241064 caatgactttattattcttgttaagagagagaattttaggatcacat 241018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 242374 - 242411
Alignment:
Q  132 atcaagagagagaattttaggatcacatcacagacaca 169  Q
    |||||||||||||||||||||||||||||||| |||||    
T  242374 atcaagagagagaattttaggatcacatcacaaacaca 242411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 640 - 777
Alignment:
Q  25 cttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttat 124  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  640 cttcagatatagccaaaacaagatagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgactttat 739  T
Q  125 tattcttatcaagagagagaattttaggatcacatcac 162  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  740 tattcttgtcaagagagagaattttaggatcacatcac 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 86697 - 86553
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    |||||||| ||||| || ||||||||||||||||| |    ||||||||||||| |||||||||  |||||||||||||||||||||||| |||||||||    
T  86697 ggacatcaggagctccatatatagccaaaacaagaga----tatcatgacctacaaaaataaaacattgaacccaaaattaatttggttcctttattcca 86602  T
Q  113 caatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  86601 caatgactttattattcttgtcaaaagagagaattttaggatcacatca 86553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 54975 - 54826
Alignment:
Q  13 ggacatcaagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattcca 112  Q
    ||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54975 ggacatccagagctccagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcca 54876  T
Q  113 caatgac-tttattattcttatcaagagagagaattttaggatcacatca 161  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  54875 caatgacttttattattcttgtcaagagagagaactttaggatcacatca 54826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 1962 - 2081
Alignment:
Q  40 aaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagag 139  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||    
T  1962 aaacaagacaga--tatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacattattattcttgtcgagag 2059  T
Q  140 agagaattttaggatcacatca 161  Q
    ||||||||||||||||||||||    
T  2060 agagaattttaggatcacatca 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 12037064 - 12037135
Alignment:
Q  92 taatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcacatcaca 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12037064 taatttggttcttttattccacaatgactttattattcttgtcaagagagagaattttaggatcacatcaca 12037135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 12037053 - 12036986
Alignment:
Q  94 atttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcacatca 161  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12037053 atttggttcttttattccacaatgactttattattcttgttaagagagagaattttaggatcacatca 12036986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 16309291 - 16309220
Alignment:
Q  175 agatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||||||||  | ||||  ||| ||||| |||||||||||||| |||||||||||||||    
T  16309291 agatgaagttaccttcaaacaagtttcctaacaccgtgcttcacagctttggtgtactacacaaactaccta 16309220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 21727405 - 21727458
Alignment:
Q  193 acaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||   || ||||| ||||||||||||||||||||||||||||||    
T  21727405 acaaactacctaacgccgtgcttcacagctttggtgtagtacacaaactaccta 21727458  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 15004244 - 15004149
Alignment:
Q  161 acagacacaatcaaagatgaagttaccttcaaaca--aactacctacaaccatgcttaacagctttggtgtagtacacaaactacctaactctctgct 256  Q
    |||||||||||||||  |||| |||||||||||||  ||| ||  |  ||| ||||| |||||||||||||||| || ||||||||||||||| ||||    
T  15004244 acagacacaatcaaa--tgaatttaccttcaaacacaaacaactaatcaccgtgcttcacagctttggtgtagttcaaaaactacctaactctttgct 15004149  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 17864362 - 17864296
Alignment:
Q  171 tcaaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    |||||||||||||||||||||||||||| ||  || ||| || || ||| ||||||||||||||||||    
T  17864362 tcaaagatgaagttaccttcaaacaaacaactcac-accttgttttacaactttggtgtagtacacaa 17864296  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 17869844 - 17869792
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtag 231  Q
    ||||||||||||||||||||| | |||||||| ||||||| || ||||||||||    
T  17869844 tgaagttaccttcaaacaaac-aactacaaccttgcttaaaagttttggtgtag 17869792  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 17879596 - 17879544
Alignment:
Q  178 tgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtag 231  Q
    ||||||||||||||||||||| | |||||||| ||||||| || ||||||||||    
T  17879596 tgaagttaccttcaaacaaac-aactacaaccttgcttaaaagttttggtgtag 17879544  T

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Target: scaffold0094 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 13510 - 13610
Alignment:
Q  58 atgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcac 157  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||  || ||||||||||    
T  13510 atgacctacgaaaataaaaatttgaacccaaaat-aatttggttcttttattccataatgactttattattcttgtcaagggagaatatcttaggatcac 13608  T
Q  158 at 159  Q
    ||    
T  13609 at 13610  T

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Target: scaffold0359 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 8902 - 8974
Alignment:
Q  87 aaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcacat 159  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8902 aaaattaacttggttcttatattccacaatgactttattattcttgtcaagagagagaattttaggatcacat 8974  T

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Target: scaffold0139 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 4297 - 4195
Alignment:
Q  58 atgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcac 157  Q
    ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| |||||||||||||||||| | ||| ||||  || ||||||||||    
T  4297 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgactttattattcttgtaaagggagaacatcttaggatcac 4199  T
Q  158 atca 161  Q
    ||||    
T  4198 atca 4195  T

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Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 375304 - 375424
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||| ||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| |||    
T  375304 acaagacagatacataatgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggag 375402  T
Q  142 agaattttaggatcacatcaca 163  Q
    |  || ||||||||||||||||    
T  375403 aacatcttaggatcacatcaca 375424  T

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Target: scaffold0321 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 5292 - 5190
Alignment:
Q  58 atgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagagagaattttaggatcac 157  Q
    ||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||||| |||||||||||| | ||| ||||  || ||||||||||    
T  5292 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttaggatcac 5194  T
Q  158 atca 161  Q
    ||||    
T  5193 atca 5190  T

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Target: scaffold0180 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 11394 - 11511
Alignment:
Q  42 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttatcaagagag 141  Q
    |||||||||| | || ||||||||||||||||| | |||||| |||||| ||||||| ||||||||||||| |||||||||| ||||||| | ||| |||    
T  11394 acaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcca-aatgactttaatattcttgtaaagggag 11491  T
Q  142 agaattttaggatcacatca 161  Q
    |  || ||||||||||||||    
T  11492 aacatcttaggatcacatca 11511  T

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Target: scaffold0480 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 11414 - 11484
Alignment:
Q  176 gatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    |||||||||||||||||||||||||||||  | | ||||| |||||||||||||||||||||| |||||||    
T  11414 gatgaagttaccttcaaacaaactacctaacatcttgcttcacagctttggtgtagtacacaatctaccta 11484  T

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Target: scaffold0008 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 40557 - 40631
Alignment:
Q  171 tcaaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaaactacct 245  Q
    ||||||||||||||||||||||| ||||||||||  ||| ||||| || ||||||||||||||||||| ||||||    
T  40557 tcaaagatgaagttaccttcaaaaaaactacctaacaccgtgcttcaccgctttggtgtagtacacaatctacct 40631  T

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Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 103315 - 103410
Alignment:
Q  161 acagacacaatcaaagatgaagttaccttcaaac--aaactacctacaaccatgcttaacagctttggtgtagtacacaaactacctaactctctgct 256  Q
    |||||||||||||||  ||||||||| ||||||   |||| ||  |||||| ||||||||||||||||||||||  |||| |||||||||||| ||||    
T  103315 acagacacaatcaaa--tgaagttacattcaaaacaaaacaactaacaaccgtgcttaacagctttggtgtagtttacaatctacctaactctttgct 103410  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 26629 - 26693
Alignment:
Q  172 caaagatgaagttaccttcaaacaaactacctacaaccatgcttaacagctttggtgtagtacacaa 238  Q
    ||||||||||||||||||||||||||  | |||||||| ||||||| |||||||| |||| ||||||    
T  26629 caaagatgaagttaccttcaaacaaa--aactacaaccttgcttaaaagctttggcgtagaacacaa 26693  T

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Target: scaffold0064 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 45804 - 45730
Alignment:
Q  173 aaagatgaagttaccttcaaacaaa-ctacctacaaccatgcttaacagctttggtgtagtacacaaactaccta 246  Q
    ||||||||||||||||| ||||||| |||||||   |||| ||| |||||||||| |||||| ||||||||||||    
T  45804 aaagatgaagttaccttaaaacaaaactacctaactccattcttcacagctttggagtagtaaacaaactaccta 45730  T

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Target: scaffold0064; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 52865 - 52781
Alignment:
Q  173 aaagatgaagttaccttcaaac-aaactacctacaaccatgcttaacagctttggtgtagtacacaaactacctaactctctgct 256  Q
    |||||||||||||||||||||| ||||||||||   || ||||| |||| ||||| |||||  |||||||||||| |||| ||||    
T  52865 aaagatgaagttaccttcaaacaaaactacctaactccgtgcttcacagttttggagtagtgaacaaactacctacctctgtgct 52781  T

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Target: scaffold0143 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 36556 - 36601
Alignment:
Q  211 tgcttaacagctttggtgtagtacacaaactacctaactctctgct 256  Q
    ||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  36556 tgcttcacagctttggtgtagtttacaaactacctaactctttgct 36601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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