View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_low_19 (Length: 256)

Name: NF12621_low_19
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_low_19
NF12621_low_19
[»] chr7 (4 HSPs)
chr7 (1-147)||(11489791-11489937)
chr7 (24-147)||(13779328-13779451)
chr7 (143-240)||(11490004-11490101)
chr7 (143-240)||(13779164-13779261)
[»] chr6 (2 HSPs)
chr6 (2-147)||(24245368-24245513)
chr6 (143-240)||(24245204-24245301)
[»] chr8 (2 HSPs)
chr8 (1-147)||(19894219-19894365)
chr8 (143-240)||(19894055-19894152)
[»] chr1 (1 HSPs)
chr1 (1-109)||(542498-542606)
[»] chr2 (3 HSPs)
chr2 (2-144)||(32219538-32219680)
chr2 (143-240)||(32219371-32219468)
chr2 (1-71)||(45450649-45450719)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11489791 - 11489937
Alignment:
Q  1 gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11489791 gaatcagaaggatgaactctgatttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcat 11489890  T
Q  101 ccggtggttagtgaaaaacgagaaataaaggttaaaagaatcaactt 147  Q
    || ||||||||||||||| ||||||||||| |||||| |||||||||    
T  11489891 ccagtggttagtgaaaaaagagaaataaagcttaaaacaatcaactt 11489937  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 13779451 - 13779328
Alignment:
Q  24 ttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcatccggtggttagtgaaaaacgaga 123  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  13779451 ttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcatccagtggttagtgaaaaaagaga 13779352  T
Q  124 aataaaggttaaaagaatcaactt 147  Q
    ||||||| |||||| |||||||||    
T  13779351 aataaagcttaaaacaatcaactt 13779328  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 11490004 - 11490101
Alignment:
Q  143 aacttaataataagatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11490004 aacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactaatgt 11490101  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 13779261 - 13779164
Alignment:
Q  143 aacttaataataagatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13779261 aacttaataataaaatgataatctgaagtggcctacctcatttagtctacatataatatgaaaattataatttatagattgattactccaaatgatgt 13779164  T

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Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 24245513 - 24245368
Alignment:
Q  2 aatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcatc 101  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24245513 aatcagaaggatgaactctgatttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcatc 24245414  T
Q  102 cggtggttagtgaaaaacgagaaataaaggttaaaagaatcaactt 147  Q
    | ||||||||||||||| ||||||||||| |||||| |||||||||    
T  24245413 cagtggttagtgaaaaaagagaaataaagcttaaaacaatcaactt 24245368  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 24245301 - 24245204
Alignment:
Q  143 aacttaataataagatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24245301 aacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt 24245204  T

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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 19894365 - 19894219
Alignment:
Q  1 gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcat 100  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19894365 gaatcagaaggatgaactctgattttgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcat 19894266  T
Q  101 ccggtggttagtgaaaaacgagaaataaaggttaaaagaatcaactt 147  Q
    ||  |||||||||||||| ||||||||||| |||||| |||||||||    
T  19894265 ccaatggttagtgaaaaaagagaaataaagcttaaaacaatcaactt 19894219  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 19894152 - 19894055
Alignment:
Q  143 aacttaataataagatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt 240  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19894152 aacttaataataaaatgataatctgaagtggcctacctcactaaatctacatattatatgaaaatgataatttatagattgattactcctactgatgt 19894055  T

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Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 542498 - 542606
Alignment:
Q  1 gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  542498 gaatcagaaggatgaactctgatttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcat 542597  T
Q  101 ccggtggtt 109  Q
    |||||||||    
T  542598 ccggtggtt 542606  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 32219680 - 32219538
Alignment:
Q  2 aatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcatc 101  Q
    ||||| ||||||||||||| |||||||||| ||||||||||| |||||| ||||||| |||| ||| |||||||||| |||||||||||||||||| |||    
T  32219680 aatcaaaaggatgaactctgatttcgaaattgcttcctttcaaagtcttcactgtgaacttcatgattgactgatccggaatcaaagaaatcgaagtatc 32219581  T
Q  102 cggtggttagtgaaaaacgagaaataaaggttaaaagaatcaa 144  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||    
T  32219580 cggtggttagttaaaaaagagaaataaaggttaaaacaatcaa 32219538  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 32219468 - 32219371
Alignment:
Q  143 aacttaataataagatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt 240  Q
    ||||||||||||| ||||||||||||||  ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  32219468 aacttaataataaaatgataatctgaagcagcctacctcatgaagtctacagataatatgaaaatgataatttatagattgattacttcaactgatgt 32219371  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45450649 - 45450719
Alignment:
Q  1 gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactga 71  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||| |||||||    
T  45450649 gaatcagaaggatgaactctgatttcgaaatggcttcctttcaaagtcttcacagtgagcttcatgactga 45450719  T

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