View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_low_20 (Length: 253)

Name: NF12621_low_20
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_low_20
NF12621_low_20
[»] chr7 (15 HSPs)
chr7 (9-247)||(11814800-11815042)
chr7 (57-247)||(11813731-11813922)
chr7 (57-223)||(11810258-11810424)
chr7 (65-239)||(11819858-11820032)
chr7 (102-247)||(11816359-11816504)
chr7 (54-223)||(11811910-11812079)
chr7 (135-221)||(11808266-11808352)
chr7 (54-247)||(11808604-11808790)
chr7 (163-223)||(11815904-11815964)
chr7 (133-246)||(11811278-11811391)
chr7 (169-223)||(11809659-11809713)
chr7 (133-218)||(11820904-11820989)
chr7 (133-222)||(11812870-11812959)
chr7 (138-219)||(11814766-11814847)
chr7 (9-56)||(11812909-11812956)
[»] chr8 (2 HSPs)
chr8 (131-222)||(44252802-44252894)
chr8 (131-222)||(44249193-44249284)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 11814800 - 11815042
Alignment:
Q  9 gagaagaaagtgtactaactcatacttgaatcctctttcgtgaagtttttacaatttata----tatataagataagatatacaaaactgaaataagtca 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  11814800 gagaagaaagtgtactaactcatacttggatcctctttcgtgaagtttttacaatttatatatatatataagataagatatacaaaactgaaataagtca 11814899  T
Q  105 tccacaacaacgggtaccattgcattaaatatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcc 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11814900 tccataacaacgggtaccattgcattaaatatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcc 11814999  T
Q  205 tctttcgtgaagtttccaccaggagaggtatgatgtccatctc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11815000 tctttcgtgaagtttccaccaggagaggtatgatgtccatctc 11815042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 11813731 - 11813922
Alignment:
Q  57 ttacaatttatatatataagataagatatacaaaa-ctgaaataagtcatccacaacaacgggtaccattgcattaaatatgtgttaccataatatgatt 155  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||  ||||| |||||||||||||||||||||||||    
T  11813731 ttacaatttatatatataagataagatatacaaaaactgaaataaatcatccataacaacgggtacccatgcatgaaatatgtgttaccataatatgatt 11813830  T
Q  156 gaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggagaggtatgatgtccatctc 247  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  11813831 gaaattaatttgataagagaagaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccaggggaggtatgatgtcgatctc 11813922  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 11810258 - 11810424
Alignment:
Q  57 ttacaatttatatatataagataagatatacaaaactgaaataagtcatccacaacaacgggtaccattgcattaaatatgtgttaccataatatgattg 156  Q
    |||||||||||| | ||||||||||||||| ||||||||||||| |||||||||| ||||||||||  ||| | ||||||||||||||||||||||||||    
T  11810258 ttacaatttataaaaataagataagatataaaaaactgaaataaatcatccacaataacgggtacccgtgcttgaaatatgtgttaccataatatgattg 11810357  T
Q  157 aaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccac 223  Q
    |||| ||||||||||||||| ||| | ||||||||||||||| ||| |||||  || ||||||||||    
T  11810358 aaattaatttgataagagaataaaatattgtaacacgtacttagattctcttctgtaaagtttccac 11810424  T

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Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 11819858 - 11820032
Alignment:
Q  65 tatatatataagataagatatacaaaactgaaataagtcatccacaacaacgggtaccattgcattaaatatgtgttaccataatatgattgaaatgaat 164  Q
    |||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||||||||| |||| |||    
T  11819858 tatatataaaagaaaagatatacaaaattgaaataaatcatccacaacaacgggtacccatgcatgaaatatgtgttactataatatgattaaaattaat 11819957  T
Q  165 ttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggagaggtatgatg 239  Q
    |||||| ||||||||| |||||||| || ||||||||||| ||| |||| |||||||||| |  |||||||||||    
T  11819958 ttgataggagaagaaattgttgtaaaacatacttggatccacttccgtggagtttccaccggaggaggtatgatg 11820032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 11816359 - 11816504
Alignment:
Q  102 tcatccacaacaacgggtaccattgcattaaatatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttgga 201  Q
    ||||||||||||||| |||||  ||| | |||||||| ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  11816359 tcatccacaacaacgagtacccgtgcttaaaatatgtattatcataatatcattgaaattaatttgataagtgaagaaagtgttgtaacacgtacttgga 11816458  T
Q  202 tcctctttcgtgaagtttccaccaggagaggtatgatgtccatctc 247  Q
    ||||||| |||||||||||||||||   ||||||||||||||||||    
T  11816459 tcctcttccgtgaagtttccaccagagaaggtatgatgtccatctc 11816504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 11811910 - 11812079
Alignment:
Q  54 tttttacaatttatatatataagataagatatacaaaactgaaataagtcatccacaacaacgggtaccattgcattaaatatgtgttaccataatatga 153  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| ||||||| |||    ||| | ||||| |||||||||||||||||    
T  11811910 tttttacaatttttataaataagatgagatatacaaaactgaaataaatcatccataacaacgagtattcgtgcttgaaatacgtgttaccataatatga 11812009  T
Q  154 ttgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccac 223  Q
    ||||||| ||||||| || |||||||| ||||||||||| ||||||||| ||||| ||| ||||||||||    
T  11812010 ttgaaattaatttgaaaacagaagaaaatgttgtaacacatacttggattctcttccgtaaagtttccac 11812079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 11808266 - 11808352
Alignment:
Q  135 atgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttcc 221  Q
    ||||||||||||| | ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11808266 atgtgttaccatagtgtgactaaaattaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttcc 11808352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 11808604 - 11808790
Alignment:
Q  54 tttttacaatttatatatataagataagatatacaaaactgaaataagtcatccacaacaacgggtaccattgcattaaatatgtgttaccataatatga 153  Q
    |||||||||||||||||||||||||||     | ||||||||||||| ||||||||||||  | ||||    ||  |||  |||||||||||| ||||||    
T  11808604 tttttacaatttatatatataagataa-----agaaaactgaaataaatcatccacaacattgagtacacaggc--taatcatgtgttaccattatatga 11808696  T
Q  154 ttgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggagaggtatgatgtccatctc 247  Q
    || |||| |||||| ||||| |||||||||||||||||||||||||| |||||||| ||| | ||||||||||  ||||||||| | |||||||    
T  11808697 tttaaattaatttggtaagacaagaaagtgttgtaacacgtacttggttcctcttttgtggaatttccaccagaggaggtatgacgcccatctc 11808790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 11815904 - 11815964
Alignment:
Q  163 atttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11815904 atttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccac 11815964  T

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Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 11811278 - 11811391
Alignment:
Q  133 atatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggagagg 232  Q
    ||||||||||||||| | ||| | ||||  ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| |||  ||||    
T  11811278 atatgtgttaccatattgtgactaaaattgatttgataaaagaagaaagtgttataacacgtacttggattctctttcgtgaagtttccatcagaggagg 11811377  T
Q  233 tatgatgtccatct 246  Q
    | ||| ||||||||    
T  11811378 tctgacgtccatct 11811391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 11809659 - 11809713
Alignment:
Q  169 taagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccac 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11809659 taagagaagaaagtgttgtaacacgtacttggatcatctttcgtgaagtttccac 11809713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 11820904 - 11820989
Alignment:
Q  133 atatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtt 218  Q
    ||||||||||||||| ||||| | ||||  |||| || |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  11820904 atatgtgttaccatagtatgactaaaattgattttattagagaagaaagtgttgtaacacgtacttagatcctcttccgtgaagtt 11820989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 11812870 - 11812959
Alignment:
Q  133 atatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttcca 222  Q
    ||||||||||||||| | ||| | ||||  |||||||||||||||||||| |  |||| |||||||||||||| ||||||||||||||||    
T  11812870 atatgtgttaccatattgtgactaaaattgatttgataagagaagaaagtatactaactcgtacttggatcctgtttcgtgaagtttcca 11812959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 11814766 - 11814847
Alignment:
Q  138 tgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagttt 219  Q
    |||||||||| | ||| | ||||  ||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||    
T  11814766 tgttaccatattgtgactaaaattgatttgataagagaagaaagtgtactaactcatacttggatcctctttcgtgaagttt 11814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 11812909 - 11812956
Alignment:
Q  9 gagaagaaagtgtactaactcatacttgaatcctctttcgtgaagttt 56  Q
    ||||||||||| ||||||||| |||||| ||||| |||||||||||||    
T  11812909 gagaagaaagtatactaactcgtacttggatcctgtttcgtgaagttt 11812956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 44252802 - 44252894
Alignment:
Q  131 aaatatgtgttaccataatatgattgaaa-tgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttcca 222  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  44252802 aaatttgtgttaccataatgtgattgaaaattaatttgataagagaagaaagtgttgtaacacttacttgtatcctcttccgtgaagtttcca 44252894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 44249193 - 44249284
Alignment:
Q  131 aaatatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttcca 222  Q
    |||||||||| |||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| | | ||||| |||||||||||||    
T  44249193 aaatatgtgtcaccataatgtgattgaaattagtttgataagataagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcca 44249284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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