View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_low_21 (Length: 248)

Name: NF12621_low_21
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_low_21
NF12621_low_21
[»] chr4 (1 HSPs)
chr4 (2-238)||(10100285-10100521)
[»] chr7 (1 HSPs)
chr7 (59-235)||(31427459-31427631)
[»] chr1 (1 HSPs)
chr1 (62-184)||(33898770-33898891)
[»] chr5 (1 HSPs)
chr5 (62-231)||(26528991-26529157)
[»] chr8 (9 HSPs)
chr8 (59-231)||(5830674-5830846)
chr8 (116-184)||(19403606-19403673)
chr8 (143-235)||(19409548-19409639)
chr8 (143-235)||(19470711-19470802)
chr8 (143-235)||(19524419-19524510)
chr8 (143-235)||(19541635-19541726)
chr8 (143-235)||(19456567-19456659)
chr8 (143-235)||(19590971-19591063)
chr8 (116-184)||(19375491-19375558)
[»] chr3 (4 HSPs)
chr3 (61-235)||(9164720-9164891)
chr3 (74-184)||(9029812-9029919)
chr3 (74-185)||(9035312-9035420)
chr3 (62-103)||(40741630-40741671)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 10100521 - 10100285
Alignment:
Q  2 aaatttatctggcatgcaatgttgtggaagatttggaaaacatggaatgaggttattaggtatcaaagtaacatcttggaaatggtttcttgataagaaa 101  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  10100521 aaatttatctggcatgcaatgttgtggaagatttgggaaacacggaatgaggttattaggtatcaaactaacatcttggagatggtttcttgatcagaaa 10100422  T
Q  102 aaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttatttaaatacttaagttagagtttggtttttaact-gggcaaatactc 200  Q
    |||||||  |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |    
T  10100421 aaagtggaagaccgtgtttgtattatgaatgatactc-aaaccctcttctttgtttaaatacttaagttagagtttggtttttaactggggcaaataccc 10100323  T
Q  201 cttgtacttttccctacttgtcggttaagtactctgtg 238  Q
    |||||||| |||||||||||||||||||||||||||||    
T  10100322 cttgtactattccctacttgtcggttaagtactctgtg 10100285  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 31427631 - 31427459
Alignment:
Q  59 aggtatcaaagtaacatcttggaaatggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttattta 158  Q
    |||||||||||||| |||||  | ||||||||||| ||||||||||    |||||| ||||||||||||||||| ||||| |||||||||||||| || |    
T  31427631 aggtatcaaagtaaaatcttaaagatggtttcttgctaagaaaaaat---gggaccatgtttgtattatgaatggtactc-aacccctcttctttgttaa 31427536  T
Q  159 aatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||| |||||||||||| ||||  |||  | |||||| |||||||||||||||| || | |||| ||| |||||||||    
T  31427535 aatgcttaagttagaggttggaattttgcggggcaagtactccttgtactttttccaagttgtgggtgaagtactct 31427459  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 33898891 - 33898770
Alignment:
Q  62 tatcaaagtaacatcttggaaatggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttatttaaat 161  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||   || |||||| ||||||||||||||| ||||| || ||||| ||||  |||||||    
T  33898891 tatcaaagtaacatcttggagatggtttcttgctaaaaaaaaaaaaggagaccgtatttgtattatgaatggtactc-aaaccctcatcttagtttaaat 33898793  T
Q  162 acttaagttagagtttggttttt 184  Q
    ||||||||||||||||| |||||    
T  33898792 acttaagttagagtttgattttt 33898770  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 231
Target Start/End: Original strand, 26528991 - 26529157
Alignment:
Q  62 tatcaaagtaacatcttggaaatggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttatttaaat 161  Q
    |||||||||||||||||| | ||| ||| ||| |||||||||||  ||||||| ||| | ||||||||||| ||||  ||||| |||||||| |||||||    
T  26528991 tatcaaagtaacatcttgaagatgcttttttgctaagaaaaaag--ggggaccatgtatctattatgaatggtacttaaaccc-tcttctttgtttaaat 26529087  T
Q  162 acttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagta 231  Q
    ||||||||||||||||| ||||| |  |||||||||   |||||  ||||||| | |||| |||||||||    
T  26529088 acttaagttagagtttgattttttaaggggcaaatatctcttgtcattttcccgaattgtgggttaagta 26529157  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 5830846 - 5830674
Alignment:
Q  59 aggtatcaaagtaacatcttggaaat----ggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttcttta 154  Q
    |||||||||||||| |||||||| ||    ||||||||| |||||||||   |||  ||||||||||||||| ||||||||||| ||||| | ||| ||     
T  5830846 aggtatcaaagtaatatcttggatatatagggtttcttgctaagaaaaa---gggaaaccgtgtttgtattacgaatgatactcaaaccctt-ttcattg 5830751  T
Q  155 tttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagta 231  Q
    |||||||||||||||||||||||  ||||| |  |||||| ||| |||||| |||||||| | |||| |||||||||    
T  5830750 tttaaatacttaagttagagtttatttttttaaggggcaagtaccccttgttcttttcccgagttgtgggttaagta 5830674  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 19403606 - 19403673
Alignment:
Q  116 tgtttgtattatgaatgatactcgaacccctcttctttatttaaatacttaagttagagtttggttttt 184  Q
    |||||| || ||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||    
T  19403606 tgtttgcataatgaatgatactcaaaccc-tcttctttgtttaaatacttaagttagaggttggttttt 19403673  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 19409548 - 19409639
Alignment:
Q  143 ccctcttctttatttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||||||||||| |||||||||||||||||||| |||||||||   ||||||  ||  |||| |||||||||| |||||| |||||||||||||    
T  19409548 ccctcttctttgtttaaatacttaagttagaggttggttttt-tttgggcatgtaacccttatacttttcccaacttgtaggttaagtactct 19409639  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 19470802 - 19470711
Alignment:
Q  143 ccctcttctttatttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||||||||||| |||||||||||||||||||| |||||||||   ||||||  ||  |||| |||||||||| |||||| |||||||||||||    
T  19470802 ccctcttctttgtttaaatacttaagttagaggttggttttt-tttgggcatgtaacccttatacttttcccaacttgtaggttaagtactct 19470711  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 19524510 - 19524419
Alignment:
Q  143 ccctcttctttatttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||||||||||| |||||||||||||||||||| |||||||||   ||||||  ||  |||| |||||||||| |||||| |||||||||||||    
T  19524510 ccctcttctttgtttaaatacttaagttagaggttggttttt-tttgggcatgtaacccttatacttttcccaacttgtaggttaagtactct 19524419  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 19541726 - 19541635
Alignment:
Q  143 ccctcttctttatttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||||||||||| |||||||||||||||||||| |||||||||   ||||||  ||  |||| |||||||||| |||||| |||||||||||||    
T  19541726 ccctcttctttgtttaaatacttaagttagaggttggttttt-tttgggcatgtaacccttatacttttcccaacttgtaggttaagtactct 19541635  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 19456567 - 19456659
Alignment:
Q  143 ccctcttctttatttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||||||||||| |||||||||||||||||||| |||||||||    || ||  ||  |||| |||||||||| |||||| |||||||||||||    
T  19456567 ccctcttctttgtttaaatacttaagttagaggttggttttttttgggtcatgtaacccttatacttttcccaacttgtaggttaagtactct 19456659  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 19590971 - 19591063
Alignment:
Q  143 ccctcttctttatttaaatacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    ||||||||||| |||||||||||||||||||| |||||||||    || ||  ||  |||| |||||||||| |||||| |||||||||||||    
T  19590971 ccctcttctttgtttaaatacttaagttagaggttggttttttttgggtcatgtaacccttatacttttcccaacttgtaggttaagtactct 19591063  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 19375491 - 19375558
Alignment:
Q  116 tgtttgtattatgaatgatactcgaacccctcttctttatttaaatacttaagttagagtttggttttt 184  Q
    ||||||||| ||||||||||||| ||||| | || ||| ||||||||||||| |||||| |||||||||    
T  19375491 tgtttgtataatgaatgatactcaaaccctt-ttatttgtttaaatacttaaattagaggttggttttt 19375558  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 9164720 - 9164891
Alignment:
Q  61 gtatcaaagtaacatcttggaaatggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttatttaaa 160  Q
    ||||||||||||||||||||| | ||||||||| ||| ||||||   ||||||   |||| |||||| || | ||||| ||||  |||||||| ||||||    
T  9164720 gtatcaaagtaacatcttggagacggtttcttgctaaaaaaaaaa--ggggactacgtttttattattaacggtactcaaacca-tcttctttgtttaaa 9164816  T
Q  161 tacttaagttagagtttggtttttaactgggcaaatactccttgtacttttccctacttgtcggttaagtactct 235  Q
    |||||||||| ||||||| ||||| || |||||||||| | ||||||||||| | | |||| ||||| |||||||    
T  9164817 tacttaagtttgagtttgattttttacggggcaaatacactttgtacttttctcgaattgtaggttatgtactct 9164891  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 9029919 - 9029812
Alignment:
Q  74 atcttggaaatggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttatttaaatacttaagttaga 173  Q
    |||||| | ||| |||||||  ||||||||||||||  ||||||||| ||| || |||||||||| ||| | |||||||| |||||||||||||||||||    
T  9029919 atcttgtagatgctttcttgtcaagaaaaaagtggg--accgtgtttatataataaatgatactcaaactc-tcttctttgtttaaatacttaagttaga 9029823  T
Q  174 gtttggttttt 184  Q
    |||||| ||||    
T  9029822 gtttggatttt 9029812  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 9035420 - 9035312
Alignment:
Q  74 atcttggaaatggtttcttgataagaaaaaagtgggggaccgtgtttgtattatgaatgatactcgaacccctcttctttatttaaatacttaagttaga 173  Q
    |||||||| |||||| |||| |||||||||  || || |  |||||||||||||||||| ||||| ||||| || ||||| |||| ||||||||||||||    
T  9035420 atcttggagatggttccttgttaagaaaaa--tgaggaagtgtgtttgtattatgaatggtactcaaaccc-tcatctttgtttatatacttaagttaga 9035324  T
Q  174 gtttggttttta 185  Q
    ||||| ||||||    
T  9035323 gtttgtttttta 9035312  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 40741671 - 40741630
Alignment:
Q  62 tatcaaagtaacatcttggaaatggtttcttgataagaaaaa 103  Q
    |||| ||||||||||||||| ||||||||||| |||||||||    
T  40741671 tatctaagtaacatcttggagatggtttcttgctaagaaaaa 40741630  T

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