View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12621_low_3 (Length: 577)
Name: NF12621_low_3
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12621_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 561
Target Start/End: Complemental strand, 33438316 - 33437768
Alignment:
| Q |
13 |
agacaacaatcttgtttgttggcatcaaattgatttgcattgcagatacacctgaatttatagaaagaatctcccaaagtcctttagaatttgtttcaaa |
112 |
Q |
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| T |
33438316 |
agacaacaatcttgtttgttggcatcaaattgatttgcattgcagatacacctgaatttatagaaagaatctcccaaagtcctttagaatttgtttcaaa |
33438217 |
T |
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| Q |
113 |
atcaggcttaggtattccttgatctggtccagggattggaatttcaaatgtgggatgannnnnnnngactttagcctccacaacaaagaccagacatgag |
212 |
Q |
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| T |
33438216 |
atcaggcttaggtattccttgatctggtccagggattggaatttcaaatgtgggatgattttttttgactttagcctccacaacaaagaccaaacatgag |
33438117 |
T |
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| Q |
213 |
agagacaaaagtgtgacaatcaaaagaaccttgtgaaaagttgtcannnnnnnattttgttgttgttggattacttggttcaatgnnnnnnnctttgctc |
312 |
Q |
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| T |
33438116 |
agagacaaaagtgtgacaatcaaaagaaccttgtgaaaagttgtcatttttttattttgttgttgttggattacttggttcaatgtttttttctttgctc |
33438017 |
T |
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| Q |
313 |
atatacaacttacttctcctacataagaattttagtgtctaataaacctttgcatgagctttaacatagccactggttggataagccatttgcataaata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33438016 |
atatacaacttacttctcctacataagaattttagtgtctaataaacctttgcatgagctttaacatagccactggttggataagccatttgcacaaata |
33437917 |
T |
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| Q |
413 |
tagcaaattgatatcttcgccatgtttgtaggagaannnnnnntttaattttctgtttagggaattatatacaagtataaagaatagaaggcattttcat |
512 |
Q |
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| T |
33437916 |
tagcaaattgatatcttcgccatgtttgtaggagaaccccccctttaattttctgtttagggaattatagacaagtataaagaatagaaggcattttcat |
33437817 |
T |
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| Q |
513 |
tttgtgacnnnnnnnntatgcaccttccaattcatgtggcaaatgtata |
561 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33437816 |
tttgtgacaaaaaaaatatgcaccttccaattcatgtggcaaatgtata |
33437768 |
T |
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