View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12621_low_4 (Length: 511)

Name: NF12621_low_4
Description: NF12621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12621_low_4
NF12621_low_4
[»] chr7 (32 HSPs)
chr7 (20-505)||(47729566-47730040)
chr7 (52-141)||(9230593-9230682)
chr7 (19-138)||(9557885-9558006)
chr7 (52-141)||(25491526-25491615)
chr7 (52-141)||(13715078-13715168)
chr7 (172-268)||(26787063-26787159)
chr7 (68-140)||(11019617-11019689)
chr7 (22-115)||(25024742-25024837)
chr7 (86-140)||(10224086-10224140)
chr7 (52-141)||(26782203-26782295)
chr7 (52-141)||(40702991-40703080)
chr7 (76-135)||(14088948-14089007)
chr7 (76-135)||(14398966-14399025)
chr7 (54-141)||(18375598-18375683)
chr7 (67-141)||(34468375-34468449)
chr7 (68-130)||(19400185-19400249)
chr7 (172-268)||(9225771-9225867)
chr7 (65-130)||(26493616-26493683)
chr7 (76-141)||(27387220-27387287)
chr7 (184-268)||(38762080-38762164)
chr7 (173-268)||(43727263-43727358)
chr7 (22-109)||(3113090-3113179)
chr7 (65-111)||(8395287-8395333)
chr7 (65-111)||(36631938-36631984)
chr7 (210-268)||(38761614-38761672)
chr7 (68-141)||(45197837-45197908)
chr7 (86-130)||(38575214-38575258)
chr7 (65-108)||(14775593-14775636)
chr7 (65-108)||(15226046-15226089)
chr7 (210-268)||(6113233-6113291)
chr7 (54-141)||(23179780-23179865)
chr7 (172-240)||(31036019-31036087)
[»] chr8 (26 HSPs)
chr8 (22-141)||(40145870-40145991)
chr8 (45-141)||(28846799-28846895)
chr8 (53-138)||(42447121-42447206)
chr8 (52-137)||(24592229-24592314)
chr8 (52-140)||(13152286-13152374)
chr8 (172-268)||(9255651-9255747)
chr8 (54-130)||(10467956-10468032)
chr8 (52-141)||(40469893-40469982)
chr8 (54-141)||(9256583-9256670)
chr8 (68-141)||(24333911-24333984)
chr8 (68-141)||(21958706-21958781)
chr8 (68-141)||(3436286-3436360)
chr8 (52-141)||(14447021-14447110)
chr8 (81-141)||(2826227-2826287)
chr8 (172-268)||(13153204-13153299)
chr8 (201-268)||(41504693-41504760)
chr8 (66-112)||(15839397-15839443)
chr8 (298-347)||(22729220-22729269)
chr8 (184-268)||(8882613-8882697)
chr8 (68-132)||(27190974-27191038)
chr8 (65-108)||(24019401-24019444)
chr8 (65-108)||(28524312-28524355)
chr8 (65-108)||(29727391-29727434)
chr8 (65-108)||(39915628-39915671)
chr8 (298-347)||(28841137-28841186)
chr8 (83-123)||(34228174-34228214)
[»] chr1 (32 HSPs)
chr1 (45-141)||(30558890-30558986)
chr1 (22-140)||(9637319-9637439)
chr1 (53-140)||(25017581-25017668)
chr1 (54-139)||(32379751-32379836)
chr1 (53-141)||(30055015-30055103)
chr1 (53-141)||(40864611-40864700)
chr1 (52-141)||(48606504-48606593)
chr1 (172-268)||(44196201-44196297)
chr1 (53-141)||(52753708-52753801)
chr1 (184-268)||(6078681-6078765)
chr1 (52-141)||(26272821-26272910)
chr1 (22-141)||(15209284-15209403)
chr1 (52-141)||(22892016-22892105)
chr1 (172-268)||(14201558-14201654)
chr1 (65-113)||(32981050-32981098)
chr1 (65-130)||(35948882-35948949)
chr1 (189-268)||(29639931-29640010)
chr1 (68-115)||(33490457-33490504)
chr1 (68-130)||(41753157-41753221)
chr1 (68-141)||(41971297-41971370)
chr1 (21-115)||(42309898-42309994)
chr1 (65-109)||(7434531-7434575)
chr1 (54-141)||(14499091-14499179)
chr1 (68-129)||(32885875-32885938)
chr1 (172-268)||(49465949-49466045)
chr1 (172-268)||(52754600-52754696)
chr1 (172-267)||(31637458-31637553)
chr1 (76-119)||(170368-170413)
chr1 (310-348)||(30559940-30559978)
chr1 (68-113)||(320717-320762)
chr1 (86-130)||(11843823-11843867)
chr1 (52-104)||(49465402-49465454)
[»] chr4 (34 HSPs)
chr4 (49-132)||(17359335-17359418)
chr4 (54-141)||(21753523-21753610)
chr4 (52-141)||(4325605-4325694)
chr4 (52-141)||(31002619-31002708)
chr4 (68-141)||(53692942-53693015)
chr4 (54-141)||(3074563-3074650)
chr4 (22-130)||(24104464-24104574)
chr4 (59-141)||(31944810-31944891)
chr4 (68-141)||(12211134-12211207)
chr4 (184-268)||(31943455-31943539)
chr4 (49-140)||(1147694-1147785)
chr4 (190-268)||(21402913-21402991)
chr4 (172-268)||(3073982-3074078)
chr4 (86-141)||(42843904-42843959)
chr4 (76-141)||(48131063-48131128)
chr4 (65-112)||(6236579-6236626)
chr4 (65-111)||(25931865-25931911)
chr4 (66-112)||(36381349-36381395)
chr4 (65-111)||(40530197-40530243)
chr4 (70-141)||(55464568-55464641)
chr4 (172-268)||(47299853-47299949)
chr4 (98-141)||(8897864-8897907)
chr4 (314-349)||(10985400-10985435)
chr4 (65-112)||(13398566-13398613)
chr4 (65-108)||(20130356-20130399)
chr4 (65-108)||(26438286-26438329)
chr4 (65-108)||(34406291-34406334)
chr4 (65-108)||(43357022-43357065)
chr4 (201-268)||(45586614-45586681)
chr4 (65-108)||(47501890-47501933)
chr4 (83-141)||(30111013-30111071)
chr4 (65-106)||(17510255-17510296)
chr4 (65-106)||(29319367-29319408)
chr4 (172-268)||(24105251-24105347)
[»] chr3 (29 HSPs)
chr3 (22-140)||(15668140-15668258)
chr3 (54-141)||(24988707-24988794)
chr3 (45-141)||(42269123-42269219)
chr3 (42-141)||(9743462-9743561)
chr3 (53-140)||(43137321-43137408)
chr3 (54-141)||(51262173-51262259)
chr3 (52-141)||(37381760-37381850)
chr3 (54-141)||(3856761-3856848)
chr3 (172-268)||(46986594-46986690)
chr3 (184-268)||(53682147-53682231)
chr3 (55-117)||(17073887-17073949)
chr3 (80-141)||(50091461-50091522)
chr3 (184-268)||(16415836-16415920)
chr3 (184-268)||(18516810-18516894)
chr3 (76-141)||(31989223-31989290)
chr3 (22-141)||(1185502-1185624)
chr3 (65-108)||(40080755-40080798)
chr3 (184-268)||(33776569-33776653)
chr3 (171-266)||(15667251-15667346)
chr3 (65-108)||(39772906-39772949)
chr3 (172-268)||(30381839-30381935)
chr3 (55-95)||(42964793-42964833)
chr3 (68-141)||(51408515-51408590)
chr3 (76-141)||(53710592-53710659)
chr3 (172-267)||(50091286-50091381)
chr3 (54-92)||(24130397-24130435)
chr3 (65-115)||(34083121-34083171)
chr3 (68-140)||(5136346-5136417)
chr3 (172-264)||(47041199-47041291)
[»] chr6 (15 HSPs)
chr6 (23-141)||(25599349-25599469)
chr6 (54-141)||(32441868-32441955)
chr6 (45-141)||(30621358-30621455)
chr6 (45-141)||(11971153-11971249)
chr6 (49-141)||(25340632-25340726)
chr6 (77-141)||(31028005-31028069)
chr6 (70-140)||(12180430-12180500)
chr6 (184-268)||(2226366-2226450)
chr6 (68-134)||(1296709-1296777)
chr6 (172-268)||(12648718-12648814)
chr6 (65-130)||(24074617-24074684)
chr6 (172-268)||(7990434-7990530)
chr6 (65-109)||(34947839-34947883)
chr6 (54-112)||(12648930-12648988)
chr6 (172-258)||(30620777-30620863)
[»] chr5 (20 HSPs)
chr5 (54-141)||(1280775-1280862)
chr5 (172-268)||(8911501-8911597)
chr5 (52-141)||(27168695-27168784)
chr5 (53-141)||(3055676-3055764)
chr5 (53-141)||(22712793-22712880)
chr5 (80-141)||(23244490-23244551)
chr5 (68-141)||(28801927-28802000)
chr5 (52-141)||(15730865-15730956)
chr5 (184-268)||(19576318-19576402)
chr5 (22-140)||(8785977-8786094)
chr5 (65-130)||(204055-204122)
chr5 (65-112)||(13819086-13819133)
chr5 (65-112)||(16156017-16156064)
chr5 (65-111)||(1775377-1775423)
chr5 (68-117)||(192847-192896)
chr5 (53-92)||(12098052-12098091)
chr5 (65-108)||(26282327-26282370)
chr5 (65-108)||(36292619-36292662)
chr5 (201-266)||(39021672-39021737)
chr5 (67-112)||(39656531-39656576)
[»] chr2 (26 HSPs)
chr2 (54-141)||(12539767-12539854)
chr2 (54-129)||(31393001-31393076)
chr2 (52-141)||(33453080-33453169)
chr2 (53-141)||(19951725-19951813)
chr2 (52-140)||(45261737-45261825)
chr2 (68-141)||(26238667-26238740)
chr2 (184-268)||(31410521-31410604)
chr2 (65-115)||(4554341-4554391)
chr2 (68-135)||(7071571-7071638)
chr2 (68-132)||(18425862-18425928)
chr2 (67-141)||(32126229-32126303)
chr2 (22-108)||(17443988-17444076)
chr2 (184-268)||(27925825-27925909)
chr2 (172-268)||(30546937-30547032)
chr2 (86-141)||(1955023-1955078)
chr2 (65-108)||(6402814-6402857)
chr2 (90-141)||(26656271-26656322)
chr2 (53-96)||(27925638-27925681)
chr2 (45-112)||(30547148-30547215)
chr2 (65-112)||(42443095-42443142)
chr2 (67-109)||(31580735-31580777)
chr2 (210-268)||(31708972-31709030)
chr2 (84-141)||(40607999-40608056)
chr2 (65-109)||(17035758-17035802)
chr2 (65-109)||(17090269-17090313)
chr2 (65-105)||(41250634-41250674)
[»] scaffold0726 (1 HSPs)
scaffold0726 (54-141)||(1077-1164)
[»] scaffold0198 (1 HSPs)
scaffold0198 (52-141)||(1590-1679)
[»] scaffold0002 (1 HSPs)
scaffold0002 (68-135)||(435257-435324)
[»] scaffold0015 (1 HSPs)
scaffold0015 (68-141)||(214067-214142)
[»] scaffold0154 (1 HSPs)
scaffold0154 (79-140)||(32268-32329)
[»] scaffold0178 (1 HSPs)
scaffold0178 (52-141)||(17932-18023)
[»] scaffold0019 (1 HSPs)
scaffold0019 (68-130)||(134760-134824)
[»] scaffold0170 (1 HSPs)
scaffold0170 (76-141)||(9270-9337)
[»] scaffold0069 (1 HSPs)
scaffold0069 (65-108)||(18684-18727)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Complemental strand, 47730040 - 47729566
Alignment:
Q  20 gtagtggcggagccaaaaaatttatag--tttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaaga 117  Q
    |||||| |||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47730040 gtagtgacggagccataaattttatagagtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaaga 47729941  T
Q  118 ggctcgtcattttgtcaataaaagggatggatttagctatgaaaatctgtcaacaaaacatgtagagacaatcatttgacaacgacaaacaaatttagct 217  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||            | |||||||||||| ||||||||||| |||||||||    
T  47729940 ggctcgtcattttgtcaataaaagcgacggatttagctatgaaaatttgtca------------gtgacaatcatttggcaacgacaaacgaatttagct 47729853  T
Q  218 atgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaatcaaatttcttgtaatgatacnnnnnnngcatgggttaagtccgggcatg 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  47729852 atgaaaatttgccctatagtgacagatcttgaccgtcactacaagtcaaatcaaatttcttgtaatgatacaaagaaagcatgggttaagtccgggcatg 47729753  T
Q  318 tgcccaggctcgtcgggtggtaaaaccgcccttggacactagtggagtttgatgaaatttgatgtttgccattatggtttttgtgtacttaattttgggt 417  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47729752 tgcccaggctcgccgggtggtaaaaccgcccttagacaccagtggagtttgatgaaatttgatgtttgccattatggtttttgtgtacttaattttggg- 47729654  T
Q  418 tcagatatgccaagagccttggttgcccctgatgcagagaatgtgaatggcacatggggccacaagcataatgacatgtctctgcttc 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  47729653 tcagatatgccaagagccttggttgcccctgatgcagagaatgtgaatggcacatggggccacaggcataatgacatgtctgtgcttc 47729566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 9230682 - 9230593
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||  | ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  9230682 gcaaaattttgattgcaaattcacatgtgacataatatataaatagtcataaatcaaaataaaagaggctcgtcattttgtcgataaaag 9230593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 9558006 - 9557885
Alignment:
Q  19 agtagtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaag 116  Q
    ||||||||||||| || ||| |||||  ||| || ||||||||||||||| ||||| | ||||||||||||||||||||  ||||||||| ||||||||     
T  9558006 agtagtggcggagtcagaaattttatcgagtctgagcaaaattttgaccgcaaatttacatgtgacataatatataaattgtcataaatcaaaataaaaa 9557907  T
Q  117 aggctcgtcattttgtcaataa 138  Q
    ||| ||||||||||||| ||||    
T  9557906 aggttcgtcattttgtcgataa 9557885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 25491526 - 25491615
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||| |||| ||||| | ||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||| |||||    
T  25491526 gcaaaattttaaccgcaaatttacatgtgacataatatataaatagtcataaattgaaataaaatagactcgtcattttgtcaacaaaag 25491615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 13715078 - 13715168
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgaca-taatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||| |||  ||||||| || ||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  13715078 gcaaaattttaaccacaaattcatatatgacaataatatatgaatagtcataaattgaaataaaagaggctcgtcattttgtcaataaaag 13715168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 26787063 - 26787159
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||  ||||| |||||| ||| |||| ||||||||||||||| ||||||||||||||||||| ||| ||||| ||| ||| |||||||||    
T  26787063 aaaacatgtaatgacaaccatttggcaatgacagacaaatttagctatggaaatttgccctatagtgacggattttggctgtctctataagtcaaat 26787159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 11019617 - 11019689
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||| || |||||||||||| ||||    
T  11019617 aaattcacatgtgacataatatataaacagtcataaatcaaaataaaagaggttcctcattttgtcaacaaaa 11019689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 25024837 - 25024742
Alignment:
Q  22 agtggcggagccaaaaaatttatag--tttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaa 115  Q
    |||||||||||||  || |||||||  | || |||||||||| |||| ||||||| || |||||||||||||||||||||||||||| ||||||||    
T  25024837 agtggcggagccaggaattttatagagtctgagcaaaattttaaccgcaaattcacatatgacataatatataaataatcataaatcaaaataaaa 25024742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 10224140 - 10224086
Alignment:
Q  86 atatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  10224140 atatataaatagtcataaatcgaaataaaagaggttcttcattttgtcaataaaa 10224086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 26782203 - 26782295
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataat---cataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||| |  ||||||| ||| ||||||||||||||||| |   |||||||| |||||||| ||||||||||||||||| |||||||    
T  26782203 gcaaaattttgatctcaaattcacatgcgacataatatataaatagtagtcataaatcaaaataaaataggctcgtcattttgtcgataaaag 26782295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 40703080 - 40702991
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||  ||||||| ||||| || |||||||||||| ||||||||| |||||||| || || ||||||||||  |||||||    
T  40703080 gcaaaattttgacctcaaattcacatgtgccacaatatataaatagtcataaatcaaaataaaatagacttgtcattttgtagataaaag 40702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 14089007 - 14088948
Alignment:
Q  76 atgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaa 135  Q
    ||||||||||||||| ||||| ||||||||| |||||||| |||||||||| ||||||||    
T  14089007 atgtgacataatatacaaatagtcataaatcaaaataaaataggctcgtcagtttgtcaa 14088948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 14399025 - 14398966
Alignment:
Q  76 atgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaa 135  Q
    ||||||||||||||| ||||| ||||||||| |||||||| |||||||||| ||||||||    
T  14399025 atgtgacataatatacaaatagtcataaatcaaaataaaataggctcgtcagtttgtcaa 14398966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 18375683 - 18375598
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||| | |||| || ||||||||||||||||||||| |||||||||||||  |||| ||||||||||||| || |||||||    
T  18375683 aaaattttgacagcaaat-cacatgtgacataatatataaatagtcataaatcgaaa-gaaagtggctcgtcattttatccataaaag 18375598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 34468375 - 34468449
Alignment:
Q  67 taaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||| |||||| |||||||||||| | |||||||| ||||||||||||| |  |||||||||||| |||||    
T  34468375 taaattcacatgtgatataatatataaacagtcataaattgaaataaaagaggtttatcattttgtcaacaaaag 34468449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 19400249 - 19400185
Alignment:
Q  68 aaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    ||||||| |||||||||||||||||  |||| ||||||||| |||||||||||| ||||||||||    
T  19400249 aaattcatatgtgacataatatatataaatagtcataaatcaaaataaaagaggttcgtcatttt 19400185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 9225867 - 9225771
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| ||||  |||||| ||| |||| | | ||||| ||| |||||||||||| | |||||| ||| ||||| |||||||||||||||||    
T  9225867 aaaacatgtagtgacagccatttggcaatgacagatagatttaactacgaaaatttgccccaaagtgacggattttggctgtcactacaagtcaaat 9225771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 26493616 - 26493683
Alignment:
Q  65 cgtaaattcaaatgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    |||||||||| ||||||||||||||  ||||||| ||||| ||| |||||||||||| ||||||||||    
T  26493616 cgtaaattcacatgtgacataatatatataaatagtcatatatcaaaataaaagaggatcgtcatttt 26493683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 27387220 - 27387287
Alignment:
Q  76 atgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||  ||||||| ||||||||||||||| |||||| |||||||||| |||| |||||    
T  27387220 atgtgacataatatatataaatagtcataaatcgaaatagaagaggttcgtcattttttcaacaaaag 27387287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 38762164 - 38762080
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| |||||| |||| |||| ||| ||||||||| |||||||||| ||| |||| | ||| ||||||||||||| |||||||||    
T  38762164 gacagtcatttaacaatgacagacagatttagctacgaaaatttgctctacagtggctgattttggccgtcactaaaagtcaaat 38762080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 43727358 - 43727263
Alignment:
Q  173 aaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||||| ||||  |||||||||| |||||||| ||||   || | ||||||||||||||||||| ||| ||||| || |||| |||||||||    
T  43727358 aaacatgtagtgacagccatttgacaatgacaaacagatttgaatacggaaatttgccctatagtgacggattttggctgttactataagtcaaat 43727263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 3113090 - 3113179
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaa 109  Q
    ||||||||||||| |||||||||  |||| | || |||  || | |||||||||| |||||| |||||||||||| ||||||||||||||    
T  3113090 agtggcggagccagaaaatttatggagttcgggcgaaaaattaatcgtaaattcacatgtgatataatatataaacaatcataaatcgaa 3113179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 8395333 - 8395287
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaat 111  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||    
T  8395333 cgtaaattcacatgtgacataatatataaacagtcataaatcgaaat 8395287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 36631984 - 36631938
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaat 111  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||    
T  36631984 cgtaaattcacatgtgacataatatataaacagtcataaatcgaaat 36631938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 38761672 - 38761614
Alignment:
Q  210 atttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||| | ||||||| ||||||||||| ||| ||||||||||||| |||||||||    
T  38761672 atttagctacggaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaat 38761614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 45197908 - 45197837
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| |||||||||||||||  |||  |||||||||||||||||||||  |||||||||| |||| |||||    
T  45197908 aaattcacatgtgacataatata--aatggtcataaatcgaaataaaagagattcgtcattttttcaacaaaag 45197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 38575214 - 38575258
Alignment:
Q  86 atatataaataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    ||||||||||| |||||||||||||||||||||| || |||||||    
T  38575214 atatataaatagtcataaatcgaaataaaagaggttcatcatttt 38575258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 14775593 - 14775636
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  14775593 cgtaaattcacatatgacataatatataaatagtcataaatcga 14775636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 15226046 - 15226089
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  15226046 cgtaaattcacatatgacataatatataaatagtcataaatcga 15226089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 6113291 - 6113233
Alignment:
Q  210 atttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||| | |||||| |||||||||||| ||| |||||  ||||||||||||||||    
T  6113291 atttagctacggaaatttaccctatagtgacggattttggctatcactacaagtcaaat 6113233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 23179780 - 23179865
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||  ||||||||| || |||||  ||||||||||| | |||||| ||| ||| |||| ||||||||||| || |||||||    
T  23179780 aaaattttgattgtaaattcacatatgaca--atatataaatagttataaattgaagtaagagagactcgtcattttttcgataaaag 23179865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 31036019 - 31036087
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgac 240  Q
    ||||| ||||| |||| ||||||||||| |||| ||| ||||| ||| | |||||| ||||||||||||    
T  31036019 aaaacttgtagtgacagtcatttgacaatgacagacatatttaactacggaaattttccctatagtgac 31036087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 40145870 - 40145991
Alignment:
Q  22 agtggcggagccaaaaaatttatag--tttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagagg 119  Q
    ||||||||||||| ||| |||||||  |||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||| |    
T  40145870 agtggcggagccataaattttatagattttgggcaaaattttgaccgcaaatttatatgtgacataatatataaataatcataaatcgaaatagaagaag 40145969  T
Q  120 ctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||||||||||    
T  40145970 ctcgtcattttgtcaataaaag 40145991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 28846895 - 28846799
Alignment:
Q  45 agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||||| ||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||    
T  28846895 agtttgtgcaaaattttaaccataaattcacatgtgatataatatataaatagtcataaatcgaaataaaagagattcgtcattttatcaataaaag 28846799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 42447206 - 42447121
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataa 138  Q
    ||||||||||| || ||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  42447206 caaaattttgatcgcaaattcacatgtgacataatatataaacagtcataaatcgaaataaaagagactcgtcattttgtcaataa 42447121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 24592229 - 24592314
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaata 137  Q
    |||||||||| |||||||||||| ||||||||||| |||||| || ||||||||||| ||||||||| ||||||||||||||||||    
T  24592229 gcaaaattttaaccgtaaattcacatgtgacataacatataattagtcataaatcgagataaaagagactcgtcattttgtcaata 24592314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 13152286 - 13152374
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    |||||||||||| || ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  13152286 gcaaaattttgatcgcaaattcacatgcgacataatatataaataatcataaattgaaataaaataggcttgtcattttgtcgataaaa 13152374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 9255747 - 9255651
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| ||||  |||||| |||||||| ||||||||||||| | ||||||||||||||||||| ||| ||||| ||||||| |||||||||    
T  9255747 aaaacatgtagtgacagccatttggcaacgacatacaaatttagctacggaaatttgccctatagtgacggattttggctgtcactataagtcaaat 9255651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 10468032 - 10467956
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    |||||||| |||  ||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  10468032 aaaattttaaccacaaattcacatgcgaaataatatataaatagtcataaatcgaaataaaagaggctcgtcatttt 10467956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 40469893 - 40469982
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| || | |||||||||| ||| || |||||||||||| | |||||||||||||||||||||| || |||||||||||| |||||    
T  40469893 gcaaaatatttatcgtaaattcacatgcgatataatatataaacagtcataaatcgaaataaaagaggttcctcattttgtcaacaaaag 40469982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 9256670 - 9256583
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||| || |||||||  || ||||||||||||||||| ||||||||  ||||| |||||||||||||||||||  |||||||    
T  9256670 aaaattttgatcgcaaattcacgtgcgacataatatataaatagtcataaattaaaatacaagaggctcgtcattttgttgataaaag 9256583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 24333984 - 24333911
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||| |||| | ||| |||||||| |||||    
T  24333984 aaattcacatgtgatataatatataaatagtcataaatcgaaataaaataggcacatcaatttgtcaacaaaag 24333911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 21958781 - 21958706
Alignment:
Q  68 aaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| |||||||||||||||||  |||| |||||||||||||||||||||| || ||||||| |||| |||||    
T  21958781 aaattcatatgtgacataatatatataaatagtcataaatcgaaataaaagaggttcttcattttttcaacaaaag 21958706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 3436360 - 3436286
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcg-aaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||||| ||| || |||||||||||| |||||    
T  3436360 aaattcacatgtgacataatatataaacagtcataaatcgaaaataaaataggttcctcattttgtcaacaaaag 3436286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 14447110 - 14447021
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||  || ||||||||  | ||| |||||||||||||| ||||||||  |||||||||| | ||||| |||||||||||||||    
T  14447110 gcaaaattttatccataaattcatgtatgatataatatataaatagtcataaattaaaataaaagatgttcgtcgttttgtcaataaaag 14447021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 2826227 - 2826287
Alignment:
Q  81 acataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||||| ||||||||| |||||||| ||| | |||||||| ||||||||||    
T  2826227 acataatatataaatagtcataaatcaaaataaaataggtttgtcattttatcaataaaag 2826287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 13153204 - 13153299
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||  ||||| |||||| ||| ||||||||||||||||||   |||||||||| |||||||| ||| ||||| ||||||| |||| ||||    
T  13153204 aaaacatgtaatgacaaccatttggcaatgacaaacaaatttagctacataaatttgccc-atagtgacggattttggctgtcactataagttaaat 13153299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 41504760 - 41504693
Alignment:
Q  201 gacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||| ||||||||| | ||||||||||||||||||  ||| ||||||||||||| |||||||||    
T  41504760 gacagacagatttagctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaat 41504693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 15839443 - 15839397
Alignment:
Q  66 gtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    ||||||||||||||||||||||||||||| | |||| ||||||||||    
T  15839443 gtaaattcaaatgtgacataatatataaacagtcatgaatcgaaata 15839397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 22729269 - 22729220
Alignment:
Q  298 atgggttaagtccgggcatgtgcccaggctcgtcgggtggtaaaaccgcc 347  Q
    ||||||||| ||| ||||| || |||||||||||||||||||||||||||    
T  22729269 atgggttaaatccaggcatatgtccaggctcgtcgggtggtaaaaccgcc 22729220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 8882613 - 8882697
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| || | ||| ||||||||| | ||||||  ||||||||||| ||| ||||||||||||| |||||||||    
T  8882613 gacagtcatttgtcaatgatagacagatttagctaaggaaatttttcctatagtgacggattttggccgtcactaaaagtcaaat 8882697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 27191038 - 27190974
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgt 132  Q
    ||||||| || |||||||||||||||||| ||||||||  |||||||| | |||||| |||||||    
T  27191038 aaattcacatatgacataatatataaatagtcataaattaaaataaaaaatgctcgttattttgt 27190974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 24019401 - 24019444
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| |||||| |||||||||||||| |||||||||||    
T  24019401 cgtaaattcacatgtgatataatatataaatagtcataaatcga 24019444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 28524355 - 28524312
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  28524355 cgtaaattcacatgtgacataatatataaacagtcataaatcga 28524312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 29727391 - 29727434
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  29727391 cgtaaattcacatgtgacataatatataaacagtcataaatcga 29727434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 39915671 - 39915628
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| |||||| |||||||||||||| |||||||||||    
T  39915671 cgtaaattcacatgtgatataatatataaatagtcataaatcga 39915628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 28841186 - 28841137
Alignment:
Q  298 atgggttaagtccgggcatgtgcccaggctcgtcgggtggtaaaaccgcc 347  Q
    ||||||||| || |||||| || ||||||||||||||| |||||||||||    
T  28841186 atgggttaaatctgggcatatgtccaggctcgtcgggttgtaaaaccgcc 28841137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 34228174 - 34228214
Alignment:
Q  83 ataatatataaataatcataaatcgaaataaaagaggctcg 123  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  34228174 ataatatataaatagttataagtcgaaataaaagaggctcg 34228214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 30558890 - 30558986
Alignment:
Q  45 agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||| |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  30558890 agtttgcgcaagattttgactgtaaattcacatgtgacataatatataaatagtcataaatcaaaataaaagaggctcatcattttgtcaataaaag 30558986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 9637439 - 9637319
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagagg 119  Q
    ||||||| ||||||||| || ||  ||| || |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||     
T  9637439 agtggcgtagccaaaaatttcatcgagtctgcgcaaaattttgaccctaaattcatatgtgacataatatataaataataataaatcgaaataaaagaga 9637340  T
Q  120 ctcgtcattttgtcaataaaa 140  Q
    ||||| |||||||| ||||||    
T  9637339 ctcgttattttgtcgataaaa 9637319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 25017668 - 25017581
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    |||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  25017668 caaaattttgaccgcaaatttacatgtgacataatatataaatagtcataaatcgaaataaaagaggcttgtcattttgtcgataaaa 25017581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 32379751 - 32379836
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaa 139  Q
    |||| ||||| || ||||||| |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32379751 aaaaatttgaacgcaaattcacatgtgacatgttatataaataatcataaatcgaaataaaagagactcgtcattttgtcaataaa 32379836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 30055103 - 30055015
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||| ||||||| || |||||||||||||||||| ||||||||| ||||||||||| ||||  ||||||||||||||||    
T  30055103 caaaattttgaccgcaaattcacatatgacataatatataaatagtcataaatcaaaataaaagagactcgcaattttgtcaataaaag 30055015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 40864611 - 40864700
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcat-aaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||| ||||| | ||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||| |||||||    
T  40864611 caaaattttgaccgcaaatttacatgtgacataatatataaatagtcataaaatcgaaataaaagtgactcgtcattttgtcgataaaag 40864700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 48606504 - 48606593
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||| |||||||| |||||||||||  ||||||||||| || |||||||    
T  48606504 gcaaaattttgaccgcaaattcacatgtaacataatatataaatagtcataaattgaaataaaagaaactcgtcattttttcgataaaag 48606593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 44196297 - 44196201
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| || |||||||||||||||| |||| ||| ||||||||| | ||||||||||||||||||| ||| ||||| ||||||| |||||||||    
T  44196297 aaaacatgcagtgacaatcatttgacaatgacagacagatttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaat 44196201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 52753708 - 52753801
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaata-----aaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||     ||||||||||||||||||||  |||||||    
T  52753708 caaaattttgatcgtaaattcacatgcgacataatatataaatagtcataaatcgaaataaaattaaagaggctcgtcattttgttgataaaag 52753801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 6078681 - 6078765
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||||||| |||| ||| ||||||||| | ||||||||||||||||||||||| ||||||||||||| || ||||||    
T  6078681 gacagtcatttgacaatgacagacagatttagctacggaaatttgccctatagtgacagattttggccgtcactaaaaatcaaat 6078765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 26272821 - 26272910
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||| |||| |||| ||||| | ||||||||| ||||||||||| |||||||||||||||||| ||| ||||| ||||||||| |||||    
T  26272821 gcaaatttttaaccgcaaatttacatgtgacatgatatataaatagtcataaatcgaaataaaaaaggttcgtctttttgtcaacaaaag 26272910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 15209284 - 15209403
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagagg 119  Q
    |||||||||||||| ||||||||  ||   | |||||| ||| | || ||||||| |||||||||||||||||||   ||||||||||||||||||||||    
T  15209284 agtggcggagccaagaaatttatggagcccgagcaaaaattttaacgcaaattcacatgtgacataatatataaag--tcataaatcgaaataaaagagg 15209381  T
Q  120 ctcgtcattttgtcaataaaag 141  Q
     || |||||||||||| |||||    
T  15209382 ttcatcattttgtcaacaaaag 15209403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 22892105 - 22892016
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||  ||||||| ||||| || ||||||||||||  |||||||| ||||| || |||||||| |||||||| |||||||    
T  22892105 gcaaaattttgacctcaaattcacatgtgccacaatatataaatagacataaatcaaaatataataggctcgttattttgtcgataaaag 22892016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 14201558 - 14201654
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| ||||  |||||||||| |||| ||  ||||| ||| | ||||||||||||||||||  ||| ||||||||||||| |||||||||    
T  14201558 aaaacatgtagtgacagccatttgacaatgacatacggatttatctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaat 14201654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 32981050 - 32981098
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaataa 113  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  32981050 cgtaaattcacatgtgacataatatataaatagtcataaatcgaaataa 32981098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 35948882 - 35948949
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataa--ataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    |||||||||| ||||||||||||||||||  ||| ||||||||| |||||||||||| ||||||||||    
T  35948882 cgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagaggatcgtcatttt 35948949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 29639931 - 29640010
Alignment:
Q  189 tcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||| ||| |||| ||| ||||||||| |||||||||  |||||||||| ||| ||||||||||||| |||| ||||    
T  29639931 tcatttggcaatgacagacagatttagctacgaaaatttgttctatagtgacggattttggccgtcactaaaagttaaat 29640010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 33490504 - 33490457
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaa 115  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  33490504 aaattcacatgcgacataatatataaatagtcataaatcgaaataaaa 33490457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 41753221 - 41753157
Alignment:
Q  68 aaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    ||||||| |||||||||||||||||  |||| ||| |||||||||||||||||| || |||||||    
T  41753221 aaattcatatgtgacataatatatataaatagtcagaaatcgaaataaaagaggttcatcatttt 41753157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 41971297 - 41971370
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||||||||||||||||||| | |||||| || |||||||||||| || || ||||| ||| |||||    
T  41971297 aaattcacatgtgacataatatataaacagtcataactcaaaataaaagaggttcctcgttttgacaacaaaag 41971370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 42309898 - 42309994
Alignment:
Q  21 tagtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaa 115  Q
    ||||||||||||||  ||||||||  || ||| ||||||  || | |||||||||| ||||||||||||||||||| | |||||||| |||| ||||    
T  42309898 tagtggcggagccaggaaatttatggagcttgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaattgaaagaaaa 42309994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 7434575 - 7434531
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaa 109  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||    
T  7434575 cgtaaattcacatgtgatataatatataaacaatcataaatcgaa 7434531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 14499179 - 14499091
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatat-aaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||| ||||| || ||||||| ||| |||||||||||| ||||| || ||||| | |||||||||||||| ||||||| || |||||||    
T  14499179 aaaaatttgatcgcaaattcacatgcgacataatatattaaatagtcttaaattgtaataaaagaggctcatcattttatcgataaaag 14499091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 32885875 - 32885938
Alignment:
Q  68 aaattcaaatgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcattt 129  Q
    ||||||| ||||||||||||||  ||||||||||||||||| || ||||||||| | |||||||    
T  32885875 aaattcacatgtgacataatatatataaataatcataaatcaaattaaaagaggattgtcattt 32885938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 49465949 - 49466045
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| ||||  |||||||||| |||||||||| ||||| | |||||||| || ||||||||   || ||||  ||||||| |||||||||    
T  49465949 aaaacatgtagtgacagccatttgacaatgacaaacaaaattagcgacgaaaattttccttatagtgatgaattttggttgtcactataagtcaaat 49466045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 52754600 - 52754696
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| |||| ||| ||| ||| |||| ||| |||||||||   ||||||||||||||||||| |||  ||||  |||||| |||||||||    
T  52754600 aaaacatgtagtgacagtcaattggcaatgacagacagatttagctacagaaatttgccctatagtgacggattctggctatcactataagtcaaat 52754696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 31637553 - 31637458
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaa 267  Q
    ||||||||| | ||||| ||||| |||| || | ||| ||||| |||  ||| ||||  ||||| |||||||| ||||||||||||||||||||||    
T  31637553 aaaacatgttgtgacaaccatttaacaatgatagacagatttaactacaaaattttgttctataatgacagattttggccgtcactacaagtcaaa 31637458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 170368 - 170413
Alignment:
Q  76 atgtgacataatat--ataaataatcataaatcgaaataaaagagg 119  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  170368 atgtgacataatatatataaatagtcataaatcgaaataaaagagg 170413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 30559940 - 30559978
Alignment:
Q  310 cgggcatgtgcccaggctcgtcgggtggtaaaaccgccc 348  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  30559940 cgggcatgtgcccaggctcgccaggtggtaaaaccgccc 30559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 320717 - 320762
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataa 113  Q
    ||||||| ||||||||||||||||||  | ||||||||||||||||    
T  320717 aaattcacatgtgacataatatataatcagtcataaatcgaaataa 320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 11843823 - 11843867
Alignment:
Q  86 atatataaataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    ||||||||||| |||||||| ||||||||| ||| ||||||||||    
T  11843823 atatataaatagtcataaattgaaataaaaaaggttcgtcatttt 11843867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 49465402 - 49465454
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaa 104  Q
    ||||| |||| |||| ||||||| ||| ||||||||||||||||| |||||||    
T  49465402 gcaaagttttaaccgcaaattcacatgcgacataatatataaatagtcataaa 49465454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 17359418 - 17359335
Alignment:
Q  49 tgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgt 132  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17359418 tgtgcaaaattttgactgcaaattcacatgtgacataatatataaataatcataaatcgaaataaaagaggcacgtcattttgt 17359335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 21753523 - 21753610
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21753523 aaaattttgactgtaaattcacatatgacataatatataaataattataaatcgaaataaaataggctcgtcattttgtcaataaaag 21753610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 4325694 - 4325605
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||| ||||| | |||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||| |||||||    
T  4325694 gcaaaattttgaccgcaaatttacatgtgatataatatataaatagtcataaatttaaataaaagaggctcgtcattttgtcgataaaag 4325605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 31002619 - 31002708
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| |||||  || ||||||||||||||||||    
T  31002619 gcaaaattttgaccgcaaattcacatgtgacataatatataaatagtcataaatcaaaatacaagagattcatcattttgtcaataaaag 31002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 53692942 - 53693015
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  53692942 aaattcacatgcgacataatatataaatagtcataaatcgaaataaaagaggctcgtcattttgtcgataaaag 53693015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 3074650 - 3074563
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||| ||||||||| ||  ||||||||||||||||| ||||||||||||||||| ||| || ||||||||||| |||||||    
T  3074650 aaaattttgactgtaaattcacatacgacataatatataaatagtcataaatcgaaataaatgagacttgtcattttgtcgataaaag 3074563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 24104464 - 24104574
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagagg 119  Q
    ||||||||||||| ||| |||||  || ||| | ||||||||||||| | ||||| ||||||||||||||||||| | ||||| | ||||||||||||||    
T  24104464 agtggcggagccataaattttatcgagcttgggtaaaattttgaccgcatattcacatgtgacataatatataaacagtcatagaacgaaataaaagagg 24104563  T
Q  120 ctcgtcatttt 130  Q
    |||||||||||    
T  24104564 ctcgtcatttt 24104574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 31944891 - 31944810
Alignment:
Q  59 tttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||| || ||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||    
T  31944891 tttgaccgtaaat-cacatgcgacataatatataaataatcaaaaattgaaataaaagagactcgtcattttgtcgataaaag 31944810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 12211134 - 12211207
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||| |||||    
T  12211134 aaattcacatgtgacataatatataaataatcataaatcgaaataaaaaagattcgtcattttatcaacaaaag 12211207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 31943539 - 31943455
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| |||| ||||||||||||| ||||||||| | ||||||||| ||| ||||| |||||||||||||||||    
T  31943539 gacagtcatttggcaatgacatacaaatttagctacgaaaatttgtcttatagtgacggatattggctgtcactacaagtcaaat 31943455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 1147785 - 1147694
Alignment:
Q  49 tgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    ||||| ||||||||| |  ||||||| |||  |||||||||||||||| | ||||||| |||||||||||||||| ||||||||| ||||||    
T  1147785 tgtgctaaattttgatcacaaattcacatgctacataatatataaatagttataaatcaaaataaaagaggctcggcattttgtcgataaaa 1147694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 21402991 - 21402913
Alignment:
Q  190 catttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||||| |||| ||  |||||||||| |||||||| ||||||||||| ||| ||||||||||||| |||||||||    
T  21402991 catttgacaatgacagacggatttagctataaaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaat 21402913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 3074078 - 3073982
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaa-tttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| |||||||||||||||| || | ||||||||||||| ||||| ||||||||||||||| |||| |||||  |||||| || ||||||    
T  3074078 aaaacatgtagtgacaatcatttgacaatga-agacaaatttagctacgaaaattttgccctatagtgatagattttggctatcactataaatcaaat 3073982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 42843959 - 42843904
Alignment:
Q  86 atatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||    
T  42843959 atatataaatagtcataaatcgaaataaaagaggttcgtcattttttcaacaaaag 42843904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 48131128 - 48131063
Alignment:
Q  76 atgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||||||| | |||||||||||||||||| ||| || || ||||||||| |||||    
T  48131128 atgtgacataatatataaacattcataaatcgaaataaaaaaggttcctccttttgtcaacaaaag 48131063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 6236626 - 6236579
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||    
T  6236626 cgtaaattcatatgtgacataatatataaacagtcataaatcgaaata 6236579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 25931911 - 25931865
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaat 111  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||    
T  25931911 cgtaaattcacatgtgacataatatataaacagtcataaatcgaaat 25931865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 36381349 - 36381395
Alignment:
Q  66 gtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||    
T  36381349 gtaaattcacatgtgacataatatataaacagtcataaatcgaaata 36381395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 40530243 - 40530197
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaat 111  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||    
T  40530243 cgtaaattcacatgtgacataatatataaacagtcataaatcgaaat 40530197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 55464568 - 55464641
Alignment:
Q  70 attcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||| |||||||||||||||||  |||  || ||||||||||||||||||| |||||||||| |||| |||||    
T  55464568 attcatatgtgacataatatatataaattgtcgtaaatcgaaataaaagaggttcgtcattttttcaacaaaag 55464641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 47299949 - 47299853
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| |||||| |||| ||||||| |||  ||| ||| ||||||||| ||||||||||||||||||||  ||| |||  ||||| || |||||||||    
T  47299949 aaaatatgtagtgacagtcatttggcaataacagacagatttagctacgaaaatttgccctatagtgatggattttgctcgtcattaaaagtcaaat 47299853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 8897864 - 8897907
Alignment:
Q  98 tcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||    
T  8897864 tcataaatcaaaataaaagaggttcgtcattttgtcaacaaaag 8897907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 10985400 - 10985435
Alignment:
Q  314 catgtgcccaggctcgtcgggtggtaaaaccgccct 349  Q
    |||||||||||||||| |||||||||||||||||||    
T  10985400 catgtgcccaggctcgccgggtggtaaaaccgccct 10985435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 13398566 - 13398613
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||||||| |||||||||||||||| || | |||||||||||||||    
T  13398566 cgtaaattcacatgtgacataatatatcaacagtcataaatcgaaata 13398613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 20130399 - 20130356
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  20130399 cgtaaattcacatgtgacataatatataaacagtcataaatcga 20130356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 26438286 - 26438329
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  26438286 cgtaaattcacatgtgacataatatataaacagtcataaatcga 26438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 34406291 - 34406334
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  34406291 cgtaaattcacatgtgacataatatataaacagtcataaatcga 34406334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 43357065 - 43357022
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  43357065 cgtaaattcacatgtgacataatatataaacagtcataaatcga 43357022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 45586614 - 45586681
Alignment:
Q  201 gacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||| |||||||||   ||||||||||||||||||||||| ||||| ||||||| || ||||||    
T  45586614 gacagacatatttagctacagaaatttgccctatagtgacagattttggctgtcactaaaaatcaaat 45586681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 47501933 - 47501890
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| |||||| |||||||||||| |||||||||||||    
T  47501933 cgtaaattcacatgtgatataatatataaacaatcataaatcga 47501890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 30111071 - 30111013
Alignment:
Q  83 ataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||| ||||||||| |||||||| ||| || | |||||||||| |||||    
T  30111071 ataatatataaatagtcataaatcaaaataaaataggttctttattttgtcaacaaaag 30111013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 17510255 - 17510296
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatc 106  Q
    |||||||||| ||||||||||||||||||| | |||||||||    
T  17510255 cgtaaattcacatgtgacataatatataaacagtcataaatc 17510296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 29319367 - 29319408
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatc 106  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  29319367 cgtaaattcacatgtgatataatatataaacaatcataaatc 29319408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 24105251 - 24105347
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||||| |||||  ||||| ||| || | ||  ||||||||| | |||||||||||||||||||  || | ||| |||||||||| ||||||    
T  24105251 aaaacatgtagtgacaacaatttggcaatgagagacggatttagctacggaaatttgccctatagtgacgtatatcggctgtcactacaaatcaaat 24105347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 15668258 - 15668140
Alignment:
Q  22 agtggcggagccaaaaaatttatagtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggct 121  Q
    ||||||||||||| ||| |||| || ||| || ||||||| |||||||||||| ||||||||||||||||||||| ||||| | | ||||||||||||||    
T  15668258 agtggcggagccagaaattttagagattgggcgaaattttcaccgtaaattcacatgtgacataatatataaatagtcatatagcaaaataaaagaggct 15668159  T
Q  122 cgtcattttgtcaataaaa 140  Q
    ||| |||||||||||||||    
T  15668158 cgttattttgtcaataaaa 15668140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 24988707 - 24988794
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  24988707 aaaattttgaccacaaattcacatgtgacataatttataaataatcataaatcaaaataaaagagactcgtcattttgtcaataaaag 24988794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 42269123 - 42269219
Alignment:
Q  45 agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||| |||||||||||| |||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||  | |||||||||| || |||||    
T  42269123 agttggtgcaaaattttaaccgtaaatttatatgtgacataatatataaataattataaattgaaataaaagagatttgtcattttgtaaacaaaag 42269219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 9743561 - 9743462
Alignment:
Q  42 tatagtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||| || ||||||||||||||| ||||||| |||| ||||  |||||||||| |||||||||||||| ||| |  ||||||||||||||||||||||    
T  9743561 tatagtctgggcaaaattttgaccgcaaattcacatgttacattgtatataaatagtcataaatcgaaatcaaataaactcgtcattttgtcaataaaag 9743462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 43137408 - 43137321
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    ||||||||| |||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||| | |||||||| |||| ||||    
T  43137408 caaaattttaaccgcaaattcacatgtgacataatatatgaatagtcataaatcgaaataaaagaggtttgtcattttttcaacaaaa 43137321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 51262259 - 51262173
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||| || ||||||||||| ||| | |||||||||||||||||||||    
T  51262259 aaaattttaaccgtgaattcacatgtgacataatatataaataattat-aatcgaaataagagatgatcgtcattttgtcaataaaag 51262173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 37381760 - 37381850
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataat-cataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||| |||| ||||||| |||||| |||||||||||||| | ||||||||||||||||||||| |||||| |||||||| |||||    
T  37381760 gcaaaattttaaccgaaaattcacatgtgatataatatataaatagttcataaatcgaaataaaagaggttcgtcactttgtcaacaaaag 37381850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 3856761 - 3856848
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||| |||| ||||||| ||||||||||||||||||||| | ||||||| |||||||  ||| ||||||||||||| |||||||    
T  3856761 aaaattttcaccgcaaattcacatgtgacataatatataaatagttataaatcaaaataaagtaggttcgtcattttgtcgataaaag 3856848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 46986690 - 46986594
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| || |||| ||||||  ||| |||||||| ||||||||| | |||||| |||||||||||| ||| ||||||||||||| |||||||||    
T  46986690 aaaacatgcagtgacagtcatttagcaatgacaaacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaat 46986594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 53682231 - 53682147
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| |||||||| ||||||||| | ||||||||||||||||||| ||| ||||| ||||||| |||||||||    
T  53682231 gacagtcatttggcaatgacaaacagatttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaat 53682147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 17073887 - 17073949
Alignment:
Q  55 aaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaaga 117  Q
    |||||||||| | ||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  17073887 aaattttgactgcaaattcatatgtgacataatatataaatagtcaaaaatcgaaataaaaga 17073949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 50091522 - 50091461
Alignment:
Q  80 gacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||||||||  ||||||||    
T  50091522 gacataatatataaatagtcataaatcaaaataaaagaggttcgtcattttgctaataaaag 50091461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 16415920 - 16415836
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| |||| ||| ||||| ||| |||||||| |||||||||||| ||| ||||||||||||| |||||||||    
T  16415920 gacagtcatttggcaatgacagacagatttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaat 16415836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 18516894 - 18516810
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| |||| ||| ||||| ||| |||||||| |||||||||||| ||| ||||||||||||| |||||||||    
T  18516894 gacagtcatttggcaatgacagacagatttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaat 18516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 31989290 - 31989223
Alignment:
Q  76 atgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||| ||| |||| |||||    
T  31989290 atgtgacataatatatataaataatcataaatcgaaataaaagaggttcgtcactttttcaacaaaag 31989223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 1185502 - 1185624
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaatt-caaatgtgacataatatataaataatcataaatcgaaataaaagag 118  Q
    ||||||||||||| |||||||||  |||  | ||||||  || | |||||||| || ||||||||||||||||||| | ||||||||| |||||||||||    
T  1185502 agtggcggagccagaaaatttatgaagtccgggcaaaaaatttatcgtaaatttcacatgtgacataatatataaacagtcataaatcaaaataaaagag 1185601  T
Q  119 gctcgtcattttgtcaataaaag 141  Q
    | || | |||||||||| |||||    
T  1185602 gttccttattttgtcaacaaaag 1185624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 40080755 - 40080798
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  40080755 cgtaaattcacatgtgacataatatataaataatcataaatcga 40080798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 33776653 - 33776569
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| |||| ||| ||||||||| | |||||| ||||| |||||| ||| ||||||||||||| |||||||||    
T  33776653 gacagtcatttggcaatgacagacagatttagctacggaaattttccctacagtgacggattttggccgtcactaaaagtcaaat 33776569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 15667346 - 15667251
Alignment:
Q  171 caaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaa 266  Q
    |||||||||  | ||||| |||||||||| |||| |   |||||||||||||||||| |||||||||||  ||| |||| |||||||| |||||||    
T  15667346 caaaacatgccgcgacaaccatttgacaatgacagatggatttagctatgaaaattttccctatagtgatggattttggtcgtcactaaaagtcaa 15667251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 39772949 - 39772906
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  39772949 cgtaaattcacatgtgacataatatataaacaatcataaatcga 39772906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 30381935 - 30381839
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||| ||||| |||||||||||  ||| |||| ||| ||||| ||| | |||||| ||||||||||||  || ||||| ||||||| |||||||||    
T  30381935 aaaacttgtagtgacaatcatttagcaatgacagacagatttaactacggaaatttaccctatagtgacgaattttggctgtcactaaaagtcaaat 30381839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 42964793 - 42964833
Alignment:
Q  55 aaattttgaccgtaaattcaaatgtgacataatatataaat 95  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  42964793 aaattttaaccgtaaattcacatgtgacataatatataaat 42964833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 51408515 - 51408590
Alignment:
Q  68 aaattcaaatgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||||||||||||||  ||||||| ||||||||| |||||||| | | |||||||||| |||| |||||    
T  51408515 aaattcatatgtgacataatatatataaatagtcataaatcaaaataaaaaaagttcgtcattttttcaacaaaag 51408590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 53710659 - 53710592
Alignment:
Q  76 atgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||| ||||||||||  |||| |||||||||||||||||||| | |||||||||| |||| |||||    
T  53710659 atgtgatataatatatacaaatagtcataaatcgaaataaaagaagttcgtcattttttcaacaaaag 53710592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 50091381 - 50091286
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaa 267  Q
    ||||||||||| |||| ||||||| ||| |||  ||| ||||| ||| |||||||||||||||| |||| ||| ||||| || | || ||||||||    
T  50091381 aaaacatgtagtgacagtcatttggcaatgacgtacatatttacctacgaaaatttgccctatattgacggattttggctgttattataagtcaaa 50091286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 24130397 - 24130435
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatata 92  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  24130397 aaaaatttgaccgtaaattcacatgtgacataatatata 24130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 34083121 - 34083171
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaa 115  Q
    |||||||||| ||||||||||||||||||| | ||||||||| ||| ||||    
T  34083121 cgtaaattcacatgtgacataatatataaacagtcataaatcaaaaaaaaa 34083171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 5136417 - 5136346
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    ||||||| ||||||| ||||||||||| | ||||||||  |||||||||||| || ||| |||||||| ||||    
T  5136417 aaattcacatgtgacgtaatatataaacagtcataaattaaaataaaagaggttc-tcagtttgtcaacaaaa 5136346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 47041291 - 47041199
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtc 264  Q
    |||||||| || |||| ||||||| | | |||| ||| ||||||| |   || |||||||||||||||| ||| ||||||||||||| |||||    
T  47041291 aaaacatgcagtgacagtcatttggctatgacagacagatttagcgactgaagtttgccctatagtgacggattttggccgtcactaaaagtc 47041199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 25599469 - 25599349
Alignment:
Q  23 gtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggc 120  Q
    |||||||||| |||||||||||  ||  || ||||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  25599469 gtggcggagctaaaaaatttatcgagcctgggcaaaattttgaccgcaaattcacatgcgacatgatatataaatagtcataaatcgaaataaaataggc 25599370  T
Q  121 tcgtcattttgtcaataaaag 141  Q
    ||||||||||||| |||||||    
T  25599369 tcgtcattttgtcgataaaag 25599349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 32441868 - 32441955
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||  | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  32441868 aaaattttgattgcaaattcacatgcgacataatatataaatagtcataaatcgaaataaaagaggctcgtcattttgtcgataaaag 32441955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 30621455 - 30621358
Alignment:
Q  45 agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaat-aaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||| ||||| |||||| || ||||||| ||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||||    
T  30621455 agtttgggcaaagttttgatcgcaaattcacatgcgacataatatataaatagtcataaatcaaaataaaaagaggctcgtcattttgtcgataaaag 30621358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 11971249 - 11971153
Alignment:
Q  45 agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||| |||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||| | |||||||||| | ||||||||| |||| ||||    
T  11971249 agtttgggcaaaattttaaccgcaaattcacatgtgacataatatataaatagtcataaatcaagataaaagaggtttgtcattttgacaattaaag 11971153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 25340726 - 25340632
Alignment:
Q  49 tgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcat--tttgtcaataaaag 141  Q
    ||||||||||||| |||||||||| | || |||||||||||||||||| || |||||||||||| ||||| ||||||||  ||||||||||||||    
T  25340726 tgtgcaaaattttaaccgtaaatttatatatgacataatatataaatagtcctaaatcgaaatagaagagactcgtcattatttgtcaataaaag 25340632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 31028005 - 31028069
Alignment:
Q  77 tgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||||||||| |||||||||||||||||||||| || | |||||||||| |||||    
T  31028005 tgtgacataatatataaatagtcataaatcgaaataaaagaggttccttattttgtcaacaaaag 31028069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 12180430 - 12180500
Alignment:
Q  70 attcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||| || ||||||    
T  12180430 attcacatgcgacataatatataaatagtcataaatcgaaataaaataggctcatcattttatcgataaaa 12180500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 2226450 - 2226366
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| ||| ||| |||| ||| ||||||||| | |||||||| |||||||||| ||| ||||||||||||| |||||||||    
T  2226450 gacaatcacttggcaatgacagacagatttagctacggaaatttgcactatagtgacggattttggccgtcactaaaagtcaaat 2226366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 1296777 - 1296709
Alignment:
Q  68 aaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcattttgtca 134  Q
    |||||||||||||||||||||||||  |||| ||||||||  ||||||||| || ||||||||||||||    
T  1296777 aaattcaaatgtgacataatatatataaatagtcataaattaaaataaaagtggttcgtcattttgtca 1296709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 12648814 - 12648718
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| || ||||| |||||| ||| |||| ||| ||||||||| | ||||||| ||||| || || ||| ||||| |||||||||||||||||    
T  12648814 aaaacatgcagtgacaaacatttggcaatgacagacatatttagctacggaaatttgtcctatggtaacggattttggctgtcactacaagtcaaat 12648718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 24074684 - 24074617
Alignment:
Q  65 cgtaaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    |||||||||| |||||||||||||||||  |||| | ||||||| |||||||||||| ||||||||||    
T  24074684 cgtaaattcacatgtgacataatatataataatagtaataaatcaaaataaaagagggtcgtcatttt 24074617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 7990434 - 7990530
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| || | || ||||||| ||| |||| | | ||||||||| | ||||||| ||| ||||||| ||| ||||||||||||| |||||||||    
T  7990434 aaaacatgcagtggcagtcatttggcaatgacagatagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaat 7990530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 34947839 - 34947883
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaa 109  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||    
T  34947839 cgtaaattcacatgtgatataatatataaacaatcataaatcgaa 34947883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 12648988 - 12648930
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    ||||||||||||  ||||| | ||||| ||||||||||||||| ||||| |||||||||    
T  12648988 aaaattttgaccacaaatttacatgtggcataatatataaatagtcatacatcgaaata 12648930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 30620863 - 30620777
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcacta 258  Q
    ||||||||||| ||||  |||||  |||||||| ||| |||||||||   ||||||||||||||||||| ||| ||||  |||||||    
T  30620863 aaaacatgtagtgacatccatttagcaacgacagacagatttagctacagaaatttgccctatagtgacggattttggttgtcacta 30620777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 1280862 - 1280775
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  1280862 aaaattttaaccgcaaattcacatgtgacataatatataaatagtcataaatcgaaataaaagaggctcgtaattttgtcaacaaaag 1280775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 8911597 - 8911501
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| || |||| ||||||| ||| |||||||||||||||||| | |||||||||||||||||||  || ||||||||||||| |||||||||    
T  8911597 aaaacatgcagtgacagtcatttggcaatgacaaacaaatttagctacggaaatttgccctatagtgacgaattttggccgtcactaaaagtcaaat 8911501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 27168695 - 27168784
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||  | ||||||| || |||||||||||||||||| |||||||||||||||| |||| ||||||||||| || |||||||    
T  27168695 gcaaaattttgattgcaaattcacatttgacataatatataaatagtcataaatcgaaataatagagactcgtcattttatccataaaag 27168784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 3055764 - 3055676
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||| || ||||||| |||  | |||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||    
T  3055764 caaaattttgatcgcaaattcacatgctatataatatataaatagtcataaatcgaaataaaagagacttgtcattttgtcgataaaag 3055676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 22712793 - 22712880
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||| || || | ||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||    
T  22712793 caaaattttgaccgcaagtttacatgtgacatgatatataaatagtcataaattgaaat-aaagaggctcgtcattttgtcgataaaag 22712880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 23244490 - 23244551
Alignment:
Q  80 gacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||||    
T  23244490 gacataatatataaatagccataaattgaaataaaagaggctcgtcattttgccaataaaag 23244551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 28802000 - 28801927
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||| ||||||||||||||| | |||||||| ||||||||||||| || |||||||||||| |||||    
T  28802000 aaattcacatgcgacataatatataaacagtcataaattgaaataaaagaggttcctcattttgtcaacaaaag 28801927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 15730865 - 15730956
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaata--atcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||  | ||||||| |||||||||||||||||||||   | ||| |||||||| ||| ||||||||||||||| |||||||||    
T  15730865 gcaaaattttgaatgcaaattcacatgtgacataatatataaatagtgttatacatcgaaatcaaataggctcgtcattttgacaataaaag 15730956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 19576402 - 19576318
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||| ||||||| ||| |||| ||| ||||||||| | |||||| |||||||||||| ||| ||||||||||||| |||||||||    
T  19576402 gacagtcatttggcaatgacagacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaat 19576318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 8786094 - 8785977
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagagg 119  Q
    |||||||||| ||| || |||||  |||||| |||||||||| |||| ||||||| ||| |||||||||||||   | ||||||||  ||||||||||||    
T  8786094 agtggcggagtcaacaattttattgagtttgggcaaaattttaaccgcaaattcacatgggacataatatata---attcataaattaaaataaaagagg 8785998  T
Q  120 ctcgtcattttgtcaataaaa 140  Q
     | ||||||||||| ||||||    
T  8785997 tttgtcattttgtcgataaaa 8785977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 204122 - 204055
Alignment:
Q  65 cgtaaattcaaatgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    |||||||||| |||||||||||||||||  |||| ||||||||| |||||||||||  ||||||||||    
T  204122 cgtaaattcacatgtgacataatatataataatagtcataaatcaaaataaaagagaatcgtcatttt 204055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 13819133 - 13819086
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||    
T  13819133 cgtaaattcacatgtgacataatatataaacagtcataaatcgaaata 13819086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 16156064 - 16156017
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  16156064 cgtaaattcacatgtgacataatatataaacaatcacaaatcgaaata 16156017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 1775377 - 1775423
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaat 111  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||    
T  1775377 cgtaaattcacatgtgacataatatataaacagtcataaatcgaaat 1775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 192896 - 192847
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaaga 117  Q
    ||||||| |||| |||||||||||||| ||||||||||| ||||||||||    
T  192896 aaattcacatgtaacataatatataaacaatcataaatcaaaataaaaga 192847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 12098052 - 12098091
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatata 92  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  12098052 caaaattttaaccgtaaattcacatgtgacataatatata 12098091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 26282327 - 26282370
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  26282327 cgtaaattcacatgtgacataatatataaacagtcataaatcga 26282370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 36292619 - 36292662
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  36292619 cgtaaattcacatgtgacataatatataaacagtcataaatcga 36292662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 39021672 - 39021737
Alignment:
Q  201 gacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaa 266  Q
    |||| ||| ||||||||| | ||||||||||||||||||  ||| |||||||| |||| |||||||    
T  39021672 gacagacagatttagctacggaaatttgccctatagtgatggattttggccgttactaaaagtcaa 39021737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 39656531 - 39656576
Alignment:
Q  67 taaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||||| |||||| |||||||||||| | |||||||||||||||    
T  39656531 taaattcacatgtgatataatatataaacagtcataaatcgaaata 39656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 12539854 - 12539767
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||    
T  12539854 aaaattttgaccgtaaatttatatgtgacataatatataaatagtcatgaatcgaaataaaagaggctcatcattttgtcgataaaag 12539767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 31393076 - 31393001
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattt 129  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  31393076 aaaattttgaccgtaaatttacatgtgacataatatataaatagtcataaatcgaattaaaagaggttcgtcattt 31393001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 33453080 - 33453169
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||| || ||||||||| |||||| |||||||||||||||||||||||| || ||||| ||| ||||||||||||||| |||||    
T  33453080 gcaaaattttaactgtaaattcacatgtgagataatatataaataatcataaatcaaagtaaaataggttcgtcattttgtcaacaaaag 33453169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 19951725 - 19951813
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||| |||| ||||||| |||| |||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||| |||||    
T  19951725 caaaattttaaccgcaaattcacatgtaacataatatataaatagtcataaatcgaaataaacgagactcatcattttgtcaacaaaag 19951813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 45261737 - 45261825
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    |||||||||| |||| ||||||| |||||| |||||||||||||| ||||||||| ||||||| ||| ||| |||||||||||||||||    
T  45261737 gcaaaattttaaccgcaaattcacatgtgatataatatataaatagtcataaatctaaataaatgagcctcatcattttgtcaataaaa 45261825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 26238740 - 26238667
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||| ||||||||||||||| | |||||||||||||||||||||| || |||||| ||||| |||||    
T  26238740 aaattcacatgcgacataatatataaacagtcataaatcgaaataaaagaggttcctcatttcgtcaagaaaag 26238667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 31410521 - 31410604
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||||||| |||  |||| || ||||||||| | ||||||||||||||||||||||| ||||||||||||| || ||||||    
T  31410521 gacaatcatttggcaataacaa-cagatttagctacggaaatttgccctatagtgacagattttggccgtcactaaaattcaaat 31410604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 4554341 - 4554391
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaa 115  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||    
T  4554341 cgtaaatttagatgtgacataatatataaatagtcataaatcgaaataaaa 4554391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 7071571 - 7071638
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaa 135  Q
    ||||||| ||||||||||||| ||||| | |||||| || |||||||||||| || ||||||||||||    
T  7071571 aaattcacatgtgacataatacataaacagtcataagtcaaaataaaagaggttcctcattttgtcaa 7071638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 18425862 - 18425928
Alignment:
Q  68 aaattcaaatgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcattttgt 132  Q
    ||||||| ||||||||||||||  ||||||| ||| |||||||||||||||||| || |||||||||    
T  18425862 aaattcacatgtgacataatatatataaatagtcagaaatcgaaataaaagaggttcatcattttgt 18425928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 32126229 - 32126303
Alignment:
Q  67 taaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||| |||||| |||| ||||||| | |||||||||||||||||||||  |  |||||||||||| |||||    
T  32126229 taaattcacatgtgatataaaatataaacagtcataaatcgaaataaaagagatttatcattttgtcaacaaaag 32126303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 17443988 - 17444076
Alignment:
Q  22 agtggcggagccaaaaaatttat--agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||||||  ||||||||  ||| || ||||||  || | |||||||||| ||||||||||||||||||| | |||||||||||    
T  17443988 agtggcggagccagcaaatttatggagtctgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 17444076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 27925825 - 27925909
Alignment:
Q  184 gacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||| |||||||||| |||| ||  ||||||||| | ||||||||||||||||||| | | ||||  || ||||||||||||||    
T  27925825 gacaaccatttgacaatgacagacggatttagctacggaaatttgccctatagtgacggtttttggttgttactacaagtcaaat 27925909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 30547032 - 30546937
Alignment:
Q  172 aaaacatgtagagacaatcatttgacaacgacaaacaaatttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    |||||||| || ||||| |||||  ||| |||| |||||||||||||   ||||||||||| ||||||| ||| ||||| |||| ||||||||||||    
T  30547032 aaaacatgcagtgacaaccatttcgcaatgacagacaaatttagctacataaatttgccct-tagtgacggattttggctgtcattacaagtcaaat 30546937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 1955078 - 1955023
Alignment:
Q  86 atatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||| ||||| | |||||||||| |||||||||| |||| |||||    
T  1955078 atatataaataatcacaaatcaagataaaagaggttcgtcattttttcaacaaaag 1955023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 6402814 - 6402857
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  6402814 cgtaaattcacatgtgacataatatataaacagtcataaatcga 6402857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 26656271 - 26656322
Alignment:
Q  90 ataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||||||||||||||||||||||   ||||||||||||| |||||    
T  26656271 ataaatagtcataaatcgaaataaaagaggtatgtcattttgtcaacaaaag 26656322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 27925638 - 27925681
Alignment:
Q  53 caaaattttgaccgtaaattcaaatgtgacataatatataaata 96  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||    
T  27925638 caaaattttgaccgcaaattcacatgtgacatgatatataaata 27925681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 30547215 - 30547148
Alignment:
Q  45 agtttgtgcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||| | ||||||||||||| ||||||| |||||| |||||| ||||||| ||||| ||| |||||    
T  30547215 agtttgggtaaaattttgaccgcaaattcacatgtgatataatacataaatagtcatagatcaaaata 30547148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 42443142 - 42443095
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaaata 112  Q
    |||||||||| |||||| |||||||||||| | |||||||||||||||    
T  42443142 cgtaaattcacatgtgatataatatataaacagtcataaatcgaaata 42443095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 31580735 - 31580777
Alignment:
Q  67 taaattcaaatgtgacataatatataaataatcataaatcgaa 109  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  31580735 taaactcatatgtgacataatatataaacaatcataaatcgaa 31580777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 31708972 - 31709030
Alignment:
Q  210 atttagctatgaaaatttgccctatagtgacagatcttggccgtcactacaagtcaaat 268  Q
    ||||||||| | ||||||||||||||||||| ||| ||||  |||||||||| ||||||    
T  31708972 atttagctacggaaatttgccctatagtgacggattttggttgtcactacaaatcaaat 31709030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 40607999 - 40608056
Alignment:
Q  84 taatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||||||||||  |||||||| ||  |||| ||||| ||||||||||    
T  40607999 taatatataaataatcataaattaaaataaaaaagattcgttattttatcaataaaag 40608056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 17035758 - 17035802
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaa 109  Q
    |||||||||| || ||||||||||||| |||| ||||||||||||    
T  17035758 cgtaaattcacatatgacataatatatcaatagtcataaatcgaa 17035802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 17090269 - 17090313
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcgaa 109  Q
    |||||||||| || ||||||||||||| |||| ||||||||||||    
T  17090269 cgtaaattcacatatgacataatatatcaatagtcataaatcgaa 17090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 41250634 - 41250674
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaat 105  Q
    |||||||||| ||||||||||||||||||| | ||||||||    
T  41250634 cgtaaattcacatgtgacataatatataaacagtcataaat 41250674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 1164 - 1077
Alignment:
Q  54 aaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  1164 aaaattttgaccacaaattcacatgtgacataatttataaataatcacaaatcaaaataaaagagactcgtcattttgtcaataaaag 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 1679 - 1590
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||||||||||| ||||||  ||   |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  1679 gcaaaattttgaccgcaaattcgcatacaacataatatataaatagtcataaatcgaaataaaatacgctcgtcattttgtcaataaaag 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 435257 - 435324
Alignment:
Q  68 aaattcaaatgtgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaa 135  Q
    ||||||| ||||||||||||||||||||| | |||||||||||| ||| |||||||| ||||||||||    
T  435257 aaattcacatgtgacataatatataaatagttataaatcgaaattaaataggctcgttattttgtcaa 435324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 214067 - 214142
Alignment:
Q  68 aaattcaaatgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    ||||||| ||||||||||||||  ||||||| |||||||||||||||||||||| || ||||||| |||| |||||    
T  214067 aaattcatatgtgacataatatatataaatagtcataaatcgaaataaaagaggttcttcattttttcaacaaaag 214142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 32329 - 32268
Alignment:
Q  79 tgacataatatataaataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaa 140  Q
    |||||||||||||||| |||||||||||||||||||| ||| |  |||||||||||| ||||    
T  32329 tgacataatatataaacaatcataaatcgaaataaaaaaggtttatcattttgtcaacaaaa 32268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 18023 - 17932
Alignment:
Q  52 gcaaaattttgaccgtaaattcaaatgtgacataatatataaataatcataaatcgaaataaa--agaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||| || ||||||| |||||   ||||||||||||| ||||||||| |||||||  | ||||| ||||||||||| |||||||    
T  18023 gcaaaattttgatcgcaaattcacatgtggtgtaatatataaatagtcataaatcaaaataaaatataggcttgtcattttgtcgataaaag 17932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 134760 - 134824
Alignment:
Q  68 aaattcaaatgtgacataatat--ataaataatcataaatcgaaataaaagaggctcgtcatttt 130  Q
    ||||||| ||||||||||||||  ||||||| ||||| ||| |||||||||||| ||||||||||    
T  134760 aaattcacatgtgacataatatatataaatagtcatatatcaaaataaaagaggatcgtcatttt 134824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 9337 - 9270
Alignment:
Q  76 atgtgacataatatata--aataatcataaatcgaaataaaagaggctcgtcattttgtcaataaaag 141  Q
    |||||||||||||||||  |||| ||||||||  |||||||||||| |||||||||| |||| |||||    
T  9337 atgtgacataatatatataaatagtcataaattaaaataaaagaggttcgtcattttttcaacaaaag 9270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 18727 - 18684
Alignment:
Q  65 cgtaaattcaaatgtgacataatatataaataatcataaatcga 108  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  18727 cgtaaattcacatgtgacataatatataaacagtcataaatcga 18684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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